Diversity of grapevine yellows in Germany

Research Not

Survey for grapevine yellows phytoplasmas in diverse European countries and Israel

Research NotePhytoplasmas of a large number of GY-affected grapevines from several European countries and Israel were characterized using PCR-RFLP of a 16S rDNA region. Only phytoplasmas in the EY group and the stolbur group were found. The latter was the most wideley spread

Framework for quantification of the dynamics of root colonization by pseudomonas fluorescens isolate SBW25

Colonization of the root surface, or rhizoplane, is one of the first steps for soil-borne bacteria to become established in the plant microbiome. However, the relative contributions of processes, such as bacterial attachment and proliferation is not well characterized, and this limits our ability to comprehend the complex dynamics of microbial communities in the rhizosphere. The work presented here addresses this knowledge gap. A model system was developed to acquire quantitative data on the colonization process of lettuce (Lactuca sativa L. cultivar. All Year Round) roots by Pseudomonas fluorescens isolate SBW25. A theoretical framework is proposed to calculate attachment rate and quantify the relative contribution of bacterial attachment to colonization. This allows the assessment of attachment rates on the root surface beyond the short time period during which it can be quantified experimentally. All techniques proposed are generic and similar analyses could be applied to study various combinations of plants and bacteria, or to assess competition between species. In the future this could allow for selection of microbial traits that improve early colonization and maintenance of targeted isolates in cropping systems, with potential applications for the development of biological fertilizers

Diversity among mycoplasma-like organisms inducing grapevine yellows in France

As antibodies and molecular probes which were previously obtained for diagnosis of grapevine flavescence doree (FD; a yellows disease induced by a MLO), showed to be highly specific, a survey of grapevine samples collected in different viticultural areas in France was undertaken, using a PCR method with primers allowing amplification of a part of the 16S rRNA gene of most MLOs, and restriction analyses of the amplified products (AHRENS and SEEMÜLLER 1992). The presence of MLO was established in all the different grapevine samples, and their diversity was demonstrated. The typcial pattern yielded by FD sensu stricto-MLO was found in samples from southern vineyards, including a symptomless rootstock. Two different patterns were found in samples affected by bois noir disease of northern French vineyards, one of these patterns being previously undescribed. The present survey was non exhaustive and should be followed in the frame of a large collaboration between viticultural countries. It showed the diversity in causal agents of diseases which converge in symptomatology, and emphasizes on the need of specific diagnosis tools, for identification of each of the vector species, for epidemiological studies, and availability of planting material

A comparison of the phytoplasma associated with Australian grapevine yellows to other phytoplasmas in grapevine

The phytoplasma associated with Australian grapevine yellows (AGY) was compared to other phytoplasma diseases of grapevine using the polymerase chain reaction (PCR) and restriction fragment length polymorphism (RFLP) analysis. Comparison of eight different Australian isolates suggests that only one type of phytoplasma is associated with this disease. Based on RFLP analysis of the 16S rRNA gene, it was shown that AGY is different from the tomato big bud and sweet potato little leaf phytoplasma strains which are widespread in Australia and that it represents the only other phytoplasma strain recorded in Australia to date. Restriction profiles of grapevine phytoplasmas using Mse I suggest that AGY is unique but most closely resembles those phytoplasmas associated with grapevine diseases in the stolbur group. Sequence analysis of the 16S rRNA gene and adjacent spacer region supports this association. The uniqueness of AGY was confirmed by PCR assays using non-ribosomal primers; the primer pair STOL11f/r2 specific for stolbur phytoplasmas did not result in amplification products in grapevines affected with AGY; the primer pair fMLOl/rMLOl which amplifies a region of the tuf gene from phytoplasmas in the aster yellows cluster, amplified AGY DNA confirming its association within this phylogenetic group. RFLP analysis of the tufPCR product again highlighted a distinction between AGY and other stolbur phytoplasmas occurring in grapevine. The only other phytoplasma in Australia which is in the stolbur group is associated with dieback in papaya, and it has the same RFLP profile of the tuf PCR product as AGY

Shells and humans: molluscs and other coastal resources from the earliest human occupations at the Mesolithic shell midden of El Mazo (Asturias, Northern Spain)

Human populations exploited coastal areas with intensity during the Mesolithic in Atlantic Europe, resulting in the accumulation of large shell middens. Northern Spain is one of the most prolific regions, and especially the so-called Asturian area. Large accumulations of shellfish led some scholars to propose the existence of intensification in the exploitation of coastal resources in the region during the Mesolithic. In this paper, shell remains (molluscs, crustaceans and echinoderms) from stratigraphic units 114 and 115 (dated to the early Mesolithic c. 9 kys cal BP) at El Mazo cave (Asturias, northern Spain) were studied in order to establish resource exploitation patterns and environmental conditions. Species representation showed that limpets, top shells and sea urchins were preferentially exploited. One-millimetre mesh screens were crucial in establishing an accurate minimum number of individuals for sea urchins and to determine their importance in exploitation patterns. Environmental conditions deduced from shell assemblages indicated that temperate conditions prevailed at the time of the occupation and the morphology of the coastline was similar to today (rocky exposed shores). Information recovered relating to species representation, collection areas and shell biometry reflected some evidence of intensification (reduced shell size, collection in lower areas of exposed shores, no size selection in some units and species) in the exploitation of coastal resources through time. However, the results suggested the existence of changes in collection strategies and resource management, and periods of intense shell collection may have alternated with times of shell stock recovery throughout the Mesolithic.This research was performed as part of the project “The human response to the global climatic change in a littoral zone: the case of the transition to the Holocene in the Cantabrian coast (10,000–5000 cal BC) (HAR2010-22115-C02-01)” funded by the Spanish Ministry of Economy and Competitiveness. AGE was funded by the University of Cantabria through a predoctoral grant and IGZ was funded by the Spanish Ministry of Economy and Competitiveness through a Juan de la Cierva grant. We also would like to thank the University of Cantabria and the IIIPC for providing support, David Cuenca-Solana, Alejandro García Moreno and Lucia Agudo Pérez for their help. We also thank Jennifer Jones for correcting the English. Comments from two anonymous reviewers helped to improve the paper