Incipient chemical weathering at bedrock fracture interfaces in a tropical critical zone system, Puerto Rico

The processes that control chemical weathering of bedrock in the deep critical zone at a mm-scale are still poorly understood, but may produce 100 s of meters of regolith and substantial fluxes of silicate weathering products and thus may be important for modeling long-term, global CO₂. Weathering controls are also difficult to ascertain, as laboratory determined dissolution rates tend to be 2–5 orders of magnitude faster than field determined dissolution rates. This study aims to establish (i) the incipient processes that control the chemical weathering of the Bisley bedrock and (ii) why weathering rates calculated for the watershed may differ from laboratory rates (iii) why rates may differ across different scales of measurement. We analyzed mineralogy, elemental chemistry, and porosity in thin sections of rock obtained from drilled boreholes using Scanning Electron Microscopy (SEM) with energy dispersive spectrometry, electron probe microanalysis, and synchrotron-based Micro X-ray Fluorescence (µXRF) and X-ray Absorption Near Edge Structure (XANES). Weathering ages were determined from U-series isotope analysis. Mineral specific dissolution rates were calculated from solid-state mineralogical gradients and weathering ages. Mineralogical and elemental transects across thin sections and SEM images indicate that trace pyrite is the first mineral to dissolve. Micro-XRF mapping at 2 µm resolution revealed sulfate in pore space adjacent to dissolving pyrite, indicating that the incipient reaction is oxidative. The oxidative dissolution of pyrite produces a low pH microenvironment that aids the dissolution of pyroxene and chlorite. The rate-limiting step of weathering advance, and therefore the creation of the critical zone in the Bisley watershed, is pyrite oxidation, despite the low abundance (∼0.5 vol%) of pyrite in the parent rock. The naturally determined dissolution rates presented here either approach, converge with, or in some cases exceed, rates from the literature that have been experimentally determined. The U-series weathering age data on the mm-scale integrates the weathering advance rate over the ∼4.2 ± 0.3 kyrs that the weathering rind took to form. The weathering advance rate calculated at a watershed scale (from stream chemistry data) represents a contemporary weathering advance rate, which compares well with that calculated for the weathering rind, suggesting that the Bisley watershed has been weathering at steady-state for the last ∼4 kyrs

Assessment of a sequential phase extraction procedure for uranium-series isotope analysis of soils and sediments

The study of uranium-series (U-series) isotopes in soil and sediment materials has been proposed to quantify rates and timescales of soil production and sediment transport. Previous works have studied bulk soil or sediment material, which is a complex assemblage of primary and secondary minerals and organic compounds. However, the approach relies on the fractionation between U-series isotopes in primary minerals since they were liberated from the parent rock via weathering. In addition, secondary minerals and organic compounds have their own isotopic compositions such that the composition of the bulk material may not reflect that of primary minerals. Hence, there is a need for a sample preparation procedure that allows the isolation of primary minerals in soil or fluvial sediment samples. In this study, a sequential extraction procedure to separate primary minerals from soils and sediments was assessed. The procedure was applied to standard rock sample powders (TML-3 and BCR-2) to test whether it introduced any artefactual radioactive disequilibrium. A new step was introduced to remove the clay-sized fraction (\u3c2 \u3eµm). Significant amounts (5–14%) of U and Th were removed from the rock standards during the procedure. No significant alteration in (234U/238U) and (230Th/238U) activity ratios of the rock standards occurred during the procedure. Aliquots of soil sample were subjected to the sequential extraction process to test how each step modifies the uranium-series activity ratios and mineralogy. Although no secondary minerals were detected in the unleached soil aliquots, the sequential leaching process removed up to 17% of U and Th and modified their activity ratios by up to 3%. The modification of the activity ratios poses a demand for careful means to avoid redistribution of isotopes back to the residual phase during phase extraction

Technical note: Lithium isotopes in dolostone as a palaeo-environmental proxy - an experimental approach

Lithium (Li) isotopes in marine carbonates have considerable potential as a proxy to constrain past changes in silicate weathering fluxes and improve our understanding of Earth\u27s climate. To date the majority of Li isotope studies on marine carbonates have focussed on calcium carbonates. The determination of the Li isotope fractionation between dolomite and a dolomitizing fluid would allow us to extend investigations to deep times (i.e. Precambrian) when dolostones were the most abundant marine carbonate archives. Dolostones often contain a significant proportion of detrital silicate material, which dominates the Li budget; thus, pretreatment needs to be designed so that only the isotope composition of the carbonate-associated Li is measured. This study aims to serve two main goals: (1) to determine the Li isotope fractionation between Ca-Mg carbonates and solution, and (2) to develop a method for leaching the carbonate-associated Li out of dolostone while not affecting the Li contained within the detrital portion of the rock. We synthesized Ca-Mg carbonates at high temperatures (150 to 220 ∘C) and measured the Li isotope composition (δ7Li) of the precipitated solids and their respective reactive solutions. The relationship of the Li isotope fractionation factor with temperature was obtained ..

Technical note: Optimizing the utility of combined GPR, OSL, and Lidar (GOaL) to extract paleoenvironmental records and decipher shoreline evolution

Records of past sea levels, storms, and their impacts on coastlines are crucial for forecasting and managing future changes resulting from anthropogenic global warming. Coastal barriers that have prograded over the Holocene preserve within their accreting sands a history of storm erosion and changes in sea level. High-resolution geophysics, geochronology, and remote sensing techniques offer an optimal way to extract these records and decipher shoreline evolution. These methods include light detection and ranging (lidar) to image the lateral extent of relict shoreline dune morphology in 3-D, ground-penetrating radar (GPR) to record paleo-dune, beach, and nearshore stratigraphy, and optically stimulated luminescence (OSL) to date the deposition of sand grains along these shorelines. Utilization of these technological advances has recently become more prevalent in coastal research. The resolution and sensitivity of these methods offer unique insights on coastal environments and their relationship to past climate change. However, discrepancies in the analysis and presentation of the data can result in erroneous interpretations. When utilized correctly on prograded barriers these methods (independently or in various combinations) have produced storm records, constructed sea-level curves, quantified sediment budgets, and deciphered coastal evolution. Therefore, combining the application of GPR, OSL, and Lidar (GOaL) on one prograded barrier has the potential to generate three detailed records of (1) storms, (2) sea level, and (3) sediment supply for that coastline. Obtaining all three for one barrier (a GOaL hat-trick) can provide valuable insights into how these factors influenced past and future barrier evolution. Here we argue that systematically achieving GOaL hat-tricks on some of the 300+ prograded barriers worldwide would allow us to disentangle local patterns of sediment supply from the regional effects of storms or global changes in sea level, providing for a direct comparison to climate proxy records. Fully realizing this aim requires standardization of methods to optimize results. The impetus for this initiative is to establish a framework for consistent data collection and analysis that maximizes the potential of GOaL to contribute to climate change research that can assist coastal communities in mitigating future impacts of global warming

Last interglacial (MIS 5e) sea-level determined from a tectonically stable, far-field location, Eyre Peninsula, southern Australia

The last interglacial maximum (Marine Isotope Substage 5e [MIS 5e], 128¿116 ka) is a distinctive event in recent Earth history. Shoreline successions of this age are important for calibrating climate models and defining the overall behaviour of the crust¿mantle system to fluctuating ice and ocean-water volumes. In a global context, the recently intensified interest in last interglacial shoreline successions has revealed considerable variability in the magnitude of sea-level rise during this time interval and highlighted the need to examine paleosea-level evidence from tectonically stable, far-field settings. Situated in the far-field of continental ice sheets and on the tectonically stable Gawler Craton, the 300 km coastal sector of western Eyre Peninsula between Fowlers Bay and Lake Newland in southern Australia represents an important region for defining the glacio-eustatic (ice-equivalent) sea-level attained during the last interglacial maximum based on the relative sea-level observations from this region. Low-energy, shoaling upward, peritidal bioclastic carbonate successions of the last interglacial (locally termed Glanville Formation) formed within back-barrier, estuarine¿lagoonal environments in the lee of eolianite barrier complexes (locally termed Bridgewater Formation) along this coastline. The well-preserved shelly successions (coquinas) contain diverse molluscan fossil assemblages including species no longer living in the coastal waters of South Australia (e.g. the Sydney cockle Anadara trapezia and the benthic foraminifer Marginopora vertebralis). The extent of amino acid racemisation (a measure of fossil age based on increasing d/l value) in a range of species, and in particular A. trapezia and Katelysia sp., confirms the time equivalence of the isolated embayment-fill successions, correlated with the informal type section of the Glanville Formation at Dry Creek, north of Adelaide. Preliminary U-series analyses on A. trapezia also suggest a correlation with the last interglacial maximum, but further highlight the complexity in dating fossil molluscs by the U-series method in view of their open-system behaviour. The shelly successions of the Glanville Formation occur at elevations higher than attained by sea-level in the current, Holocene interglacial. A higher sea-level of between 2.1 ± 0.5 and 4 ± 0.5 m above present sea-level is inferred for the last interglacial maximum (MIS 5e) along this coastline based on the elevation of sedimentary successions host to the shallow subtidal¿intertidal fossil molluscs Katelysia sp., and Anadara trapezia. The paleosea-level observations place a lower limit on the sea-level attained during the last interglacial maximum and suggest that caution be exercised in the definition of the upper limit of sea-level during this interglacial

A strontium isoscape of southwestern Australia and progress toward a national strontium isoscape

Strontium isotopes (87Sr/86Sr) are widely used tracers in the geosciences. Here we exploit an opportunity to determine 87Sr/86Sr ratios on archived fluvial sediment samples from the low-density National Geochemical Survey of Australia (NGSA). The present study targeted the Yilgarn Craton in southwestern Australia. In total, 107 samples were taken from a depth of ∼ 60–80 cm in floodplain deposits at or near the outlet of large catchments (drainage basins). A coarse (&lt; 2 mm) grain-size fraction was air-dried, sieved, milled, and then digested (hydrofluoric acid and nitric acid, followed by aqua regia) to release total Sr. The Sr was then separated by chromatography and its 87Sr/86Sr ratio determined by multicollector inductively coupled plasma mass spectrometry (MC-ICP-MS). Results demonstrate a wide range of quite elevated Sr isotopic values (0.7152 to 1.0909, with a median of 0.7560) over the survey area, reflecting a large diversity of source rock lithologies, geological processes, and bedrock ages. The spatial distribution of 87Sr/86Sr shows coherent (multi-point anomalies and smooth gradients) large-scale (&gt; 100 km) patterns that appear to be broadly consistent with surface geology, regolith/soil type, and/or nearby outcropping bedrock. The most radiogenic sediment values in the Yilgarn region (87Sr/86Sr &gt; 0.8) all come from sites underlain by Archaean bedrock (2500–4000 Ma) and almost exclusively felsic intrusive lithologies. Conversely, almost all sites underlain by younger and non-granitic bedrock have outlet sediments of a less radiogenic character (87Sr/86Sr &lt; 0.8). Sampling sites underlain by mafic and ultramafic bedrock yield unradiogenic Sr sediment signatures despite their Archaean age. Several sediment 87Sr/86Sr results were validated by comparison to previously published whole-rock data from their catchment for both unradiogenic and radiogenic cases. The new Sr isotopic data are also interrogated in terms of the mineral occurrences (i.e. mineral deposits and/or operating mines) found in their catchment. Several catchments containing mineral resources across a range of commodities stand out as high-87Sr/86Sr outliers (87Sr/86Sr &gt; 0.8), whilst over half of the registered mineral resources come from an intermediate, yet still elevated, catchment sediment 87Sr/86Sr range (87Sr/86Sr = 0.728–0.767). Avenues for future work are proposed, including a national-scale Sr isoscape for Australia. Such an isoscape could be useful in future geological, forensic, archaeological, palaeontological, and ecological studies. The new spatial Sr isotope dataset for the southwestern Australia region is publicly available (de Caritat et al., 2024; https://doi.org/10.26186/149755).</p

Technical note: Optimizing the utility of combined GPR, OSL, and Lidar (GOaL) to extract paleoenvironmental records and decipher shoreline evolution

Records of past sea levels, storms, and their impacts on coastlines are crucial for forecasting and managing future changes resulting from anthropogenic global warming. Coastal barriers that have prograded over the Holocene preserve within their accreting sands a history of storm erosion and changes in sea level. High-resolution geophysics, geochronology, and remote sensing techniques offer an optimal way to extract these records and decipher shoreline evolution. These methods include light detection and ranging (lidar) to image the lateral extent of relict shoreline dune morphology in 3-D, ground-penetrating radar (GPR) to record paleo-dune, beach, and nearshore stratigraphy, and optically stimulated luminescence (OSL) to date the deposition of sand grains along these shorelines. Utilization of these technological advances has recently become more prevalent in coastal research. The resolution and sensitivity of these methods offer unique insights on coastal environments and their relationship to past climate change. However, discrepancies in the analysis and presentation of the data can result in erroneous interpretations. When utilized correctly on prograded barriers these methods (independently or in various combinations) have produced storm records, constructed sea-level curves, quantified sediment budgets, and deciphered coastal evolution. Therefore, combining the application of GPR, OSL, and Lidar (GOaL) on one prograded barrier has the potential to generate three detailed records of (1) storms, (2) sea level, and (3) sediment supply for that coastline. Obtaining all three for one barrier (a GOaL hat-trick) can provide valuable insights into how these factors influenced past and future barrier evolution. Here we argue that systematically achieving GOaL hat-tricks on some of the 300+ prograded barriers worldwide would allow us to disentangle local patterns of sediment supply from the regional effects of storms or global changes in sea level, providing for a direct comparison to climate proxy records. Fully realizing this aim requires standardization of methods to optimize results. The impetus for this initiative is to establish a framework for consistent data collection and analysis that maximizes the potential of GOaL to contribute to climate change research that can assist coastal communities in mitigating future impacts of global warming.</p

MYC functions are specific in biological subtypes of breast cancer and confers resistance to endocrine therapy in luminal tumours.

BACKGROUND: MYC is amplified in approximately 15% of breast cancers (BCs) and is associated with poor outcome. c-MYC protein is multi-faceted and participates in many aspects of cellular function and is linked with therapeutic response in BCs. We hypothesised that the functional role of c-MYC differs between molecular subtypes of BCs. METHODS: We therefore investigated the correlation between c-MYC protein expression and other proteins involved in different cellular functions together with clinicopathological parameters, patients' outcome and treatments in a large early-stage molecularly characterised series of primary invasive BCs (n=1106) using immunohistochemistry. The METABRIC BC cohort (n=1980) was evaluated for MYC mRNA expression and a systems biology approach utilised to identify genes associated with MYC in the different BC molecular subtypes. RESULTS: High MYC and c-MYC expression was significantly associated with poor prognostic factors, including grade and basal-like BCs. In luminal A tumours, c-MYC was associated with ATM (P=0.005), Cyclin B1 (P=0.002), PIK3CA (P=0.009) and Ki67 (P<0.001). In contrast, in basal-like tumours, c-MYC showed positive association with Cyclin E (P=0.003) and p16 (P=0.042) expression only. c-MYC was an independent predictor of a shorter distant metastases-free survival in luminal A LN+ tumours treated with endocrine therapy (ET; P=0.013). In luminal tumours treated with ET, MYC mRNA expression was associated with BC-specific survival (P=0.001). In ER-positive tumours, MYC was associated with expression of translational genes while in ER-negative tumours it was associated with upregulation of glucose metabolism genes. CONCLUSIONS: c-MYC function is associated with specific molecular subtypes of BCs and its overexpression confers resistance to ET. The diverse mechanisms of c-MYC function in the different molecular classes of BCs warrants further investigation particularly as potential therapeutic targets

Elemental signatures of Australopithecus africanus teeth reveal seasonal dietary stress

Reconstructing the detailed dietary behaviour of extinct hominins is challenging1\u2014particularly for a species such as Australopithecus africanus, which has a highly variable dental morphology that suggests a broad diet2,3. The dietary responses of extinct hominins to seasonal fluctuations in food availability are poorly understood, and nursing behaviours even less so; most of the direct information currently available has been obtained from high-resolution trace-element geochemical analysis of Homo sapiens (both modern and fossil), Homo neanderthalensis4 and living apes5. Here we apply high-resolution trace-element analysis to two A.&nbsp;africanus specimens from Sterkfontein Member 4 (South Africa), dated to 2.6\u20132.1&nbsp;million years ago. Elemental signals indicate that A.&nbsp;africanus infants predominantly consumed breast milk for the first year after birth. A cyclical elemental pattern observed following the nursing sequence\u2014comparable to the seasonal dietary signal that is seen in contemporary wild primates and other mammals\u2014indicates irregular food availability. These results are supported by isotopic evidence for a geographical range that was dominated by nutritionally depauperate areas. Cyclical accumulation of lithium in A.&nbsp;africanus teeth also corroborates the idea that their range was characterized by fluctuating resources, and that they possessed physiological adaptations to this instability. This study provides insights into the dietary cycles and ecological behaviours of A.&nbsp;africanus in response to food availability, including the potential cyclical resurgence of milk intake during times of nutritional challenge (as observed in modern wild orangutans5). The geochemical findings for these teeth reinforce the unique place of A.&nbsp;africanus in the fossil record, and indicate dietary stress in specimens that date to shortly before the extinction of Australopithecus in South Africa about two million years ago

Quaternary vertebrate faunas from Sumba, Indonesia: implications for Wallacean biogeography and evolution

Historical patterns of diversity, biogeography and faunal turnover remain poorly understood for Wallacea, the biologically and geologically complex island region between the Asian and Australian continental shelves. A distinctive Quaternary vertebrate fauna containing the small-bodied hominin Homo floresiensis, pygmy Stegodon proboscideans, varanids and giant murids has been described from Flores, but Quaternary faunas are poorly known from most other Lesser Sunda Islands. We report the discovery of extensive new fossil vertebrate collections from Pleistocene and Holocene deposits on Sumba, a large Wallacean island situated less than 50 km south of Flores. A fossil assemblage recovered from a Pleistocene deposit at Lewapaku in the interior highlands of Sumba, which may be close to 1 million years old, contains a series of skeletal elements of a very small Stegodon referable to S. sumbaensis, a tooth attributable to Varanus komodoensis, and fragmentary remains of unidentified giant murids. Holocene cave deposits at Mahaniwa dated to approximately 2000–3500 BP yielded extensive material of two new genera of endemic large-bodied murids, as well as fossils of an extinct frugivorous varanid. This new baseline for reconstructing Wallacean faunal histories reveals that Sumba's Quaternary vertebrate fauna, although phylogenetically distinctive, was comparable in diversity and composition to the Quaternary fauna of Flores, suggesting that similar assemblages may have characterized Quaternary terrestrial ecosystems on many or all of the larger Lesser Sunda Islands