2,666 research outputs found
Rectified voltage induced by a microwave field in a confined two-dimensional electron gas with a mesoscopic static vortex
We investigate the effect of a microwave field on a confined two dimensional
electron gas which contains an insulating region comparable to the Fermi
wavelength. The insulating region causes the electron wave function to vanish
in that region. We describe the insulating region as a static vortex. The
vortex carries a flux which is determined by vanishing of the charge density of
the electronic fluid due to the insulating region. The sign of the vorticity
for a hole is opposite to the vorticity for adding additional electrons. The
vorticity gives rise to non-commuting kinetic momenta. The two dimensional
electron gas is described as fluid with a density which obeys the Fermi-Dirac
statistics. The presence of the confinement potential gives rise to vanishing
kinetic momenta in the vicinity of the classical turning points. As a result,
the Cartesian coordinate do not commute and gives rise to a Hall current which
in the presence of a modified Fermi-Surface caused by the microwave field
results in a rectified voltage. Using a Bosonized formulation of the two
dimensional gas in the presence of insulating regions allows us to compute the
rectified current. The proposed theory may explain the experimental results
recently reported by J. Zhang et al.Comment: 14 pages, 2 figure
Stability of Spatial Optical Solitons
We present a brief overview of the basic concepts of the soliton stability
theory and discuss some characteristic examples of the instability-induced
soliton dynamics, in application to spatial optical solitons described by the
NLS-type nonlinear models and their generalizations. In particular, we
demonstrate that the soliton internal modes are responsible for the appearance
of the soliton instability, and outline an analytical approach based on a
multi-scale asymptotic technique that allows to analyze the soliton dynamics
near the marginal stability point. We also discuss some results of the rigorous
linear stability analysis of fundamental solitary waves and nonlinear impurity
modes. Finally, we demonstrate that multi-hump vector solitary waves may become
stable in some nonlinear models, and discuss the examples of stable
(1+1)-dimensional composite solitons and (2+1)-dimensional dipole-mode solitons
in a model of two incoherently interacting optical beams.Comment: 34 pages, 9 figures; to be published in: "Spatial Optical Solitons",
Eds. W. Torruellas and S. Trillo (Springer, New York
Trading-off Data Fit and Complexity in Training Gaussian Processes with Multiple Kernels
This is the author accepted manuscript. The final version is available from Springer Verlag via the DOI in this recordLOD 2019: Fifth International Conference on Machine Learning, Optimization, and Data Science, 10-13 September 2019, Siena, ItalyGaussian processes (GPs) belong to a class of probabilistic techniques that have been successfully used in different domains of machine learning and optimization. They are popular because they provide uncertainties in predictions, which sets them apart from other modelling methods providing only point predictions. The uncertainty is particularly useful for decision making as we can gauge how reliable a prediction is. One of the fundamental challenges in using GPs is that the efficacy of a model is conferred by selecting an appropriate kernel and the associated hyperparameter values for a given problem. Furthermore, the training of GPs, that is optimizing the hyperparameters using a data set is traditionally performed using a cost function that is a weighted sum of data fit and model complexity, and the underlying trade-off is completely ignored. Addressing these challenges and shortcomings, in this article, we propose the following automated training scheme. Firstly, we use a weighted product of multiple kernels with a view to relieve the users from choosing an appropriate kernel for the problem at hand without any domain specific knowledge. Secondly, for the first time, we modify GP training by using a multi-objective optimizer to tune the hyperparameters and weights of multiple kernels and extract an approximation of the complete trade-off front between data-fit and model complexity. We then propose to use a novel solution selection strategy based on mean standardized log loss (MSLL) to select a solution from the estimated trade-off front and finalise training of a GP model. The results on three data sets and comparison with the standard approach clearly show the potential benefit of the proposed approach of using multi-objective optimization with multiple kernels.Natural Environment Research Council (NERC
Bright ligand-activatable fluorescent protein for high-quality multicolor live-cell super-resolution microscopy
We introduce UnaG as a green-to-dark photoswitching fluorescent protein capable of high-quality super-resolution imaging with photon numbers equivalent to the brightest photoswitchable red protein. UnaG only fluoresces upon binding of a fluorogenic metabolite, bilirubin, enabling UV-free reversible photoswitching with easily controllable kinetics and low background under Epi illumination. The on- and off-switching rates are controlled by the concentration of the ligand and the excitation light intensity, respectively, where the dissolved oxygen also promotes the off-switching. The photo-oxidation reaction mechanism of bilirubin in UnaG suggests that the lack of ligand-protein covalent bond allows the oxidized ligand to detach from the protein, emptying the binding cavity for rebinding to a fresh ligand molecule. We demonstrate super-resolution single-molecule localization imaging of various subcellular structures genetically encoded with UnaG, which enables facile labeling and simultaneous multicolor imaging of live cells. UnaG has the promise of becoming a default protein for high-performance super-resolution imaging. Photoconvertible proteins occupy two color channels thereby limiting multicolour localisation microscopy applications. Here the authors present UnaG, a new green-to-dark photoswitching fluorescent protein for super-resolution imaging, whose activation is based on a noncovalent binding with bilirubin
Composite structural motifs of binding sites for delineating biological functions of proteins
Most biological processes are described as a series of interactions between
proteins and other molecules, and interactions are in turn described in terms
of atomic structures. To annotate protein functions as sets of interaction
states at atomic resolution, and thereby to better understand the relation
between protein interactions and biological functions, we conducted exhaustive
all-against-all atomic structure comparisons of all known binding sites for
ligands including small molecules, proteins and nucleic acids, and identified
recurring elementary motifs. By integrating the elementary motifs associated
with each subunit, we defined composite motifs which represent
context-dependent combinations of elementary motifs. It is demonstrated that
function similarity can be better inferred from composite motif similarity
compared to the similarity of protein sequences or of individual binding sites.
By integrating the composite motifs associated with each protein function, we
define meta-composite motifs each of which is regarded as a time-independent
diagrammatic representation of a biological process. It is shown that
meta-composite motifs provide richer annotations of biological processes than
sequence clusters. The present results serve as a basis for bridging atomic
structures to higher-order biological phenomena by classification and
integration of binding site structures.Comment: 34 pages, 7 figure
Effects of Gyejibongnyeong-hwan on dysmenorrhea caused by blood stagnation: study protocol for a randomized controlled trial
<p>Abstract</p> <p>Background</p> <p>Gyejibongnyeong-hwan (GJBNH) is one of the most popular Korean medicine formulas for menstrual pain of dysmenorrhea. The concept of blood stagnation in Korean medicine is considered the main factor of causing abdominal pain, or cramps, during menstrual periods. To treat the symptoms, GJBNH is used to fluidify the stagnated blood and induce the blood flow to be smooth, reducing pain as the result. The purpose of this trial is to identify the efficacy of GJBNH in dysmenorrhea caused by blood stagnation.</p> <p>Methods</p> <p>This study is a multi-centre, randomised, double-blind, controlled trial with two parallel arms: the group taking GJBNH and the group taking placebo. 100 patients (women from age 18 to 35) will be enrolled to the trial. Through randomization 50 patients will be in experiment arm, and the other 50 patients will be in control arm. At the second visit (baseline), all participants who were already screened that they fulfil both the inclusion and the exclusion criteria will be randomised into two groups. Each group will take the intervention three times per day during two menstrual cycles. After the treatment for two cycles, each patient will be followed up during their 3<sup>rd</sup>, 4<sup>th </sup>and 5<sup>th </sup>menstrual cycles. From the screening (Visit 1) through the second follow-up (Visit 6) the entire process will take 25 weeks.</p> <p>Discussion</p> <p>This trial will provide evidence for the effectiveness of GJBNH in treating periodical pain due to dysmenorrhea that is caused by blood stagnation. The primary outcome between the two groups will be measured by changes in the Visual Analogue Score (VAS) of pain. The secondary outcome will be measured by the Blood Stagnation Scale, the Short-form McGill questionnaire and the COX menstrual symptom scale. Analysis of covariance (ANCOVA) and repeated measured ANOVA will be used to analyze the data analysis.</p> <p>Trial registration</p> <p>Current Controlled Trials: <a href="http://www.controlled-trials.com/ISRCTN30426947">ISRCTN30426947</a></p
Quantum Criticality in Heavy Fermion Metals
Quantum criticality describes the collective fluctuations of matter
undergoing a second-order phase transition at zero temperature. Heavy fermion
metals have in recent years emerged as prototypical systems to study quantum
critical points. There have been considerable efforts, both experimental and
theoretical, which use these magnetic systems to address problems that are
central to the broad understanding of strongly correlated quantum matter. Here,
we summarize some of the basic issues, including i) the extent to which the
quantum criticality in heavy fermion metals goes beyond the standard theory of
order-parameter fluctuations, ii) the nature of the Kondo effect in the quantum
critical regime, iii) the non-Fermi liquid phenomena that accompany quantum
criticality, and iv) the interplay between quantum criticality and
unconventional superconductivity.Comment: (v2) 39 pages, 8 figures; shortened per the editorial mandate; to
appear in Nature Physics. (v1) 43 pages, 8 figures; Non-technical review
article, intended for general readers; the discussion part contains more
specialized topic
Endoscopic treatment of prepatellar bursitis
Operative treatment of prepatellar bursitis is indicated in intractable bursitis. The most common complication of surgical treatment for prepatellar bursitis is skin problems. For traumatic prepatellar bursitis, we propose a protocol of outpatient endoscopic surgery under local anaesthesia. From September 1996 to February 2001, 60 cases of failed nonoperative treatment for prepatellar bursitis were included. The average age was 33.5 ± 11.1 years (range 21–55). The average operation duration was 18 minutes. Two to three mini-arthroscopic portals were used in our series. No sutures or a simple suture was needed for the portals after operation. After follow-up for an average of 36.3 months, all patients are were symptom-free and had regained knee function. None of the population had local tenderness or hypo-aesthesia around their wound. Their radiographic and sonographic examinations showed no recurrence of bursitis. Outpatient arthroscopic bursectomy under local anaesthesia is an effective procedure for the treatment of post-traumatic prepatellar bursitis after failed conservative treatments. Both the cosmetic results and functional results were satisfactory
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