Phylogenetic relationships of African Caecilians (Amphibia: Gymnophiona): insights from mitochondrial rRNA gene sequences

Africa (excluding the Seychelles) has a diverse caecilian fauna, including the endemic family Scolecomorphidae and six endemic genera of the more cosmopolitan Caeciliidae. Previous molecular phylogenetic studies have not included any caecilians from the African mainland. Partial 12S and 16S mitochondrial gene sequences were obtained for two species of the endemic African Scolecomorphidae and five species and four genera of African Caeciliids, aligned against previously reported sequences for 16 caecilian species, and analysed using parsimony, maximum likelihood, Bayesian and distance methods. Results are in agreement with traditional taxonomy in providing support for the monophyly of the African Caeciliid genera Boulengerula and Schistometopum and for the Scolecomorphidae. They disagree in indicating that the Caeciliidae is paraphyletic with respect to the Scolecomorphidae. Although more data from morphology and/or molecules will be required to resolve details of the interrelationships of the African caecilian genera, the data provide strong support for at least two origins of caecilians in which the eye is reduced and covered with bone, and do not support the hypotheses that the caecilian assemblages of Africa, and of East and of West Africa are monophyletic

Synthesis of oligodeoxyribonucleotides containing a tricyclic thio analogue of O6-methylguanine and their recognition by MGMT and Atl1

Promutagenic O6-alkylguanine adducts in DNA are repaired in humans by O6-methylguanine-DNA-methyltransferase (MGMT) in an irreversible reaction. Here we describe the synthesis of a phosphoramidite that allows the preparation of oligodeoxyribonucleotides (ODNs) containing a novel tricyclic thio analogue of O6-methylguanine in which the third ring bridges the 6-thio group and C7 of a 7-deazapurine. These ODNs are very poor substrates for MGMT and poorly recognised by the alkyltransferase-like protein, Atl1. Examination of the active sites of both MGMT and Atl1 suggest large steric clashes hindering binding of the analogue. Such analogues, if mutagenic, are likely to be highly toxic

Quantum correction to the Kubo formula in closed mesoscopic systems

We study the energy dissipation rate in a mesoscopic system described by the parametrically-driven random-matrix Hamiltonian H[\phi(t)] for the case of linear bias \phi=vt. Evolution of the field \phi(t) causes interlevel transitions leading to energy pumping, and also smears the discrete spectrum of the Hamiltonian. For sufficiently fast perturbation this smearing exceeds the mean level spacing and the dissipation rate is given by the Kubo formula. We calculate the quantum correction to the Kubo result that reveals the original discreteness of the energy spectrum. The first correction to the system viscosity scales proportional to v^{-2/3} in the orthogonal case and vanishes in the unitary case.Comment: 4 pages, 3 eps figures, REVTeX

Alanine-scanning mutagenesis of protein mannosyl-transferase from Streptomyces coelicolor reveals strong activity-stability correlation

In Actinobacteria, protein O-mannosyl transferase (Pmt)-mediated protein O-glycosylation has an important role in cell envelope physiology. In S. coelicolor, defective Pmt leads to increased susceptibility to cell wall-targeting antibiotics, including vancomycin and β-lactams, and resistance to phage ϕC31. The aim of this study was to gain a deeper understanding of the structure and function of S. coelicolor Pmt. Sequence alignments and structural bioinformatics were used to identify target sites for an alanine-scanning mutagenesis study. Mutant alleles were introduced into pmt-deficient S. coelicolor strains using an integrative plasmid and scored for their ability to complement phage resistance and antibiotic hypersusceptibility phenotypes. Twenty-three highly conserved Pmt residues were each substituted for alanine. Six mutant alleles failed to complement the pmt▬ strains in either assay. Mapping the six corresponding residues onto a homology model of the three-dimensional structure of Pmt, indicated that five are positioned close to the predicted catalytic DE motif. Further mutagenesis to produce more conservative substitutions at these six residues produced Pmts that invariably failed to complement the DT1025 pmt▬ strain, indicating that strict residue conservation was necessary to preserve function. Cell fractionation and Western blotting of strains with the non-complementing pmt alleles revealed undetectable levels of the enzyme in either the membrane fractions or whole cell lysates. Meanwhile for all of the strains that complemented the antibiotic hypersusceptibility and phage resistance phenotypes, Pmt was readily detected in the membrane fraction. These data indicate a tight correlation between the activity of Pmt and its stability or ability to localize to the membrane

Insulated skin temperature as a measure of core body temperature for individuals wearing CBRN protective clothing

This study assessed the validity of insulated skin temperature (Tis) to predict rectal temperature (Tre) for use as a non-invasive measurement of thermal strain to reduce the risk of heat illness for emergency service personnel. Volunteers from the Police, Fire and Rescue, and Ambulance Services performed rolerelated tasks in hot (30 ◦C) and neutral (18 ◦C) conditions, wearing service specific personal protective equipment. Insulated skin temperature and micro climate temperature (Tmc) predicted Tre with an adjusted r2 = 0.87 and standard error of the estimate (SEE) of 0.19 ◦C. A bootstrap validation of the equation resulted in an adjusted r2 = 0.85 and SEE = 0.20 ◦C. Taking into account the 0.20 ◦C error, the prediction of Tre resulted in a sensitivity and specificity of 100% and 91%, respectively. Insulated skin temperature and Tmc can be used in a model to predict Tre in emergency service personnel wearing CBRN protective clothing with an SEE of 0.2 ◦C. However, the model is only valid for Tis over 36.5 ◦C, above which thermal stability is reached between the core and the skin

Water availability is a principal driver of large-scale land cover spatial heterogeneity in sub-Saharan savannahs

© 2018, The Author(s). Context: The heterogeneous mosaic nature of African savannah vegetation is a key aspect of its ecology. This study evaluates mosaic distributions and characteristics across sub-Saharan Africa, investigating the environmental drivers of mosaic formation. Objectives: This study was designed to determine: (1) on a continental scale, how frequent are mosaics in savannahs? and (2) what are the key environmental drivers in the formation of mosaics? Methods: Landsat ETM+ satellite imagery was used to generate land-cover maps for 39 sample areas across sub-Saharan Africa. The spatial complexity of land-cover mosaics at 4628 savannah sub-sites was quantified, and modelled using random forests to identify the relative importance of environmental variables driving mosaic presence. Results: Only six sub-sites constituted a single land-cover class, illustrating that mosaic habitats are abundant at the scale analysed (19.6 km2), although mosaic characteristics varied considerably. Results indicate precipitation is most important in influencing mosaic complexity, followed by evapotranspiration, temperature, lithology and distance to rivers. Fire and ecosystem engineer presence are of lesser importance at this study scale. Conclusions: Mosaics are ubiquitous in the African savannahs studied, their presence influenced by multiple environmental drivers, with water being key. The lower importance of fire and large mammal disturbance is likely resulting from these highly individualistic site-based process varying between sites, resulting in no single, coherent, across-Africa disturbance signal, and/or lack of detail in available data at this scale. Therefore, large-scale determinants of savannah mosaics appear climate-driven. Under future global warming scenarios, African savannahs are likely to become more homogenous

Conductance Peak Height Correlations for a Coulomb-Blockaded Quantum Dot in a Weak Magnetic Field

We consider statistical correlations between the heights of conductance peaks corresponding to two different levels in a Coulomb-blockaded quantum dot. Correlations exist for two peaks at the same magnetic field if the field does not fully break time-reversal symmetry as well as for peaks at different values of a magnetic field that fully breaks time-reversal symmetry. Our results are also relevant to Coulomb-blockade conductance peak height statistics in the presence of weak spin-orbit coupling in a chaotic quantum dot.Comment: 5 pages, 3 figures, REVTeX 4, accepted for publication in Phys. Rev.

Probing the energy bands of a Bose-Einstein condensate in an optical lattice

We simulate three experimental methods which could be realized in the laboratory to probe the band excitation energies and the momentum distribution of a Bose-Einstein condensate inside an optical lattice. The values of the excitation energies obtained in these different methods agree within the accuracy of the simulation. The meaning of the results in terms of density and phase deformations is tested by studying the relaxation of a phase-modulated condensate towards the ground state.Comment: 5 pages, 5 figure

New determination of the D0→K−π+π0 and D0→K−π+π+π− coherence factors and average strong-phase differences

AbstractMeasurements of the coherence factors (RKππ0 and RK3π) and the average strong-phase differences (δDKππ0 and δDK3π) for the decays D0→K−π+π0 and D0→K−π+π+π− are presented. These parameters are important inputs to the determination of the unitarity triangle angle γ in B∓→DK∓ decays, where D designates a D0 or D¯0 meson decaying to a common final state. The measurements are made using quantum correlated DD¯ decays collected by the CLEO-c experiment at the ψ(3770) resonance, and augment a previously published analysis by the inclusion of new events in which the signal decay is tagged by the mode D→KS0π+π−. The measurements also benefit from improved knowledge of external inputs, namely the D0D¯0 mixing parameters, rDKπ and several D-meson branching fractions. The measured values are RKππ0=0.82±0.07, δDKππ0=(164−14+20)°, RK3π=0.32−0.28+0.20 and δDK3π=(225−78+21)°. Consideration is given to how these measurements can be improved further by using the larger quantum-correlated data set collected by BESIII