Preliminary Results from the Caltech Core-Collapse Project (CCCP)

We present preliminary results from the Caltech Core-Collapse Project (CCCP), a large observational program focused on the study of core-collapse SNe. Uniform, high-quality NIR and optical photometry and multi-epoch optical spectroscopy have been obtained using the 200'' Hale and robotic 60'' telescopes at Palomar, for a sample of 50 nearby core-collapse SNe. The combination of both well-sampled optical light curves and multi-epoch spectroscopy will enable spectroscopically and photometrically based subtype definitions to be disentangled from each other. Multi-epoch spectroscopy is crucial to identify transition events that evolve among subtypes with time. The CCCP SN sample includes every core-collapse SN discovered between July 2004 and September 2005 that was visible from Palomar, found shortly (< 30 days) after explosion (based on available pre-explosion photometry), and closer than ~120 Mpc. This complete sample allows, for the first time, a study of core-collapse SNe as a population, rather than as individual events. Here, we present the full CCCP SN sample and show exemplary data collected. We analyze available data for the first ~1/3 of the sample and determine the subtypes of 13 SNe II based on both light curve shapes and spectroscopy. We discuss the relative SN II subtype fractions in the context of associating SN subtypes with specific progenitor stars.Comment: To appear in the proceedings of the meeting "The Multicoloured Landscape of Compact Objects and their Explosive Origins", Cefalu, Italy, June 2006, to be published by AIP, Eds. L. Burderi et a

Direct observation of size scaling and elastic interaction between nano-scale defects in collision cascades

Using in-situ transmission electron microscopy, we have directly observed nano-scale defects formed in ultra-high purity tungsten by low-dose high energy self-ion irradiation at 30K. At cryogenic temperature lattice defects have reduced mobility, so these microscope observations offer a window on the initial, primary damage caused by individual collision cascade events. Electron microscope images provide direct evidence for a power-law size distribution of nano-scale defects formed in high-energy cascades, with an upper size limit independent of the incident ion energy, as predicted by Sand et al. [Eur. Phys. Lett., 103:46003, (2013)]. Furthermore, the analysis of pair distribution functions of defects observed in the micrographs shows significant intra-cascade spatial correlations consistent with strong elastic interaction between the defects

RSAT 2011: regulatory sequence analysis tools

RSAT (Regulatory Sequence Analysis Tools) comprises a wide collection of modular tools for the detection of cis-regulatory elements in genome sequences. Thirteen new programs have been added to the 30 described in the 2008 NAR Web Software Issue, including an automated sequence retrieval from EnsEMBL (retrieve-ensembl-seq), two novel motif discovery algorithms (oligo-diff and info-gibbs), a 100-times faster version of matrix-scan enabling the scanning of genome-scale sequence sets, and a series of facilities for random model generation and statistical evaluation (random-genome-fragments, random-motifs, random-sites, implant-sites, sequence-probability, permute-matrix). Our most recent work also focused on motif comparison (compare-matrices) and evaluation of motif quality (matrix-quality) by combining theoretical and empirical measures to assess the predictive capability of position-specific scoring matrices. To process large collections of peak sequences obtained from ChIP-seq or related technologies, RSAT provides a new program (peak-motifs) that combines several efficient motif discovery algorithms to predict transcription factor binding motifs, match them against motif databases and predict their binding sites. Availability (web site, stand-alone programs and SOAP/WSDL (Simple Object Access Protocol/Web Services Description Language) web services): http://rsat.ulb.ac.be/rsat/