410 research outputs found
A note on the algebraic growth rate of Poincar\'e series for Kleinian groups
In this note we employ infinite ergodic theory to derive estimates for the
algebraic growth rate of the Poincar\'e series for a Kleinian group at its
critical exponent of convergence.Comment: 8 page
Radon--Nikodym representations of Cuntz--Krieger algebras and Lyapunov spectra for KMS states
We study relations between --KMS states on Cuntz--Krieger algebras
and the dual of the Perron--Frobenius operator .
Generalising the well--studied purely hyperbolic situation, we obtain under
mild conditions that for an expansive dynamical system there is a one--one
correspondence between --KMS states and eigenmeasures of
for the eigenvalue 1. We then consider
representations of Cuntz--Krieger algebras which are induced by Markov fibred
systems, and show that if the associated incidence matrix is irreducible then
these are --isomorphic to the given Cuntz--Krieger algebra. Finally, we
apply these general results to study multifractal decompositions of limit sets
of essentially free Kleinian groups which may have parabolic elements. We
show that for the Cuntz--Krieger algebra arising from there exists an
analytic family of KMS states induced by the Lyapunov spectrum of the analogue
of the Bowen--Series map associated with . Furthermore, we obtain a formula
for the Hausdorff dimensions of the restrictions of these KMS states to the set
of continuous functions on the limit set of . If has no parabolic
elements, then this formula can be interpreted as the singularity spectrum of
the measure of maximal entropy associated with .Comment: 30 pages, minor changes in the proofs of Theorem 3.9 and Fact
XMM-Newton EPIC Observation of SMC SNR 0102-72.3
Results from observations of the young oxygen-rich supernova remnant SNR 0102-72.3 in the Small Magellanic Cloud during the calibration phase of the XMM-Newton Observatory are presented. Both EPIC-PN and MOS observations show a ringlike structure with a radius of ~15'' already known from Einstein, ROSAT and Chandra observations. Spectra of the entire SNR as well as parts in the eastern half were analyzed confirming shocked hot plasma in non-uniform ionization stages as the origin of the X-ray emission. The spectra differ in the northeastern and the southeastern part of the X-ray ring, showing emission line features of different strength. The temperature in the northeastern part is significantly higher than in the southeast, reflected by the lines of higher ionization stages and the harder continuum. Comparison to radio data shows the forward shock of the blast wave dominating in the northern part of the SNR, while the southern emission is most likely produced by the recently formed reverse shock in the ejecta. In the case of the overall spectrum of SNR 0102-72.3, the two-temperature non-equilibrium ionization model is more consistent with the data in comparison to the single plane-parallel shock model. The structure of SNR 0102-72.3 is complex due to variations in shock propagation leading to spatially differing X-ray spectra
On conformal measures and harmonic functions for group extensions
We prove a Perron-Frobenius-Ruelle theorem for group extensions of
topological Markov chains based on a construction of -finite conformal
measures and give applications to the construction of harmonic functions.Comment: To appear in Proceedings of "New Trends in Onedimensional Dynamics,
celebrating the 70th birthday of Welington de Melo
Signal-to-Noise Ratio Enhancement Using Graphene-Based Passive Microelectrode Arrays
This work is aimed toward the goal of investigating the influence of different materials on the signal-to-noise ratio (SNR) of passive neural microelectrode arrays (MEAs). Noise reduction is one factor that can substantially improve neural interface performance. The MEAs are fabricated using gold, indium tin oxide (ITO), and chemical vapor deposited (CVD) graphene. 3D-printed Nylon reservoirs are then adhered to the glass substrates with identical MEA patterns. Reservoirs are filled equally with a fluid that is commonly used for neuronal cell culture. Signal is applied to glass micropipettes immersed in the solution, and response is measured on an oscilloscope from a microprobe placed on the contact pad external to the reservoir. The time domain response signal is transformed into a frequency spectrum, and SNR is calculated from the ratio of power spectral density of the signal to the power spectral density of baseline noise at the frequency of the applied signal. We observed as the magnitude or the frequency of the input voltage signal gets larger, graphene-based MEAs increase the signal-to-noise ratio significantly compared to MEAs made of ITO and gold. This result indicates that graphene provides a better interface with the electrolyte solution and could lead to better performance in neural hybrid systems for in vitro investigations of neural processes
The Reproducibility of Blood Acid Base Responses in Male Collegiate Athletes Following Individualised Doses of Sodium Bicarbonate: A Randomised Controlled Crossover Study
Background: Current evidence suggests sodium bicarbonate (NaHCO3) should be ingested based upon the individualised alkalotic peak of either blood pH or bicarbonate (HCO3−) because of large inter-individual variations (10–180 min). If such a strategy is to be practical, the blood analyte response needs to be reproducible. Objective: This study aimed to evaluate the degree of reproducibility of both time to peak (TTP) and absolute change in blood pH, HCO3− and sodium (Na+) following acute NaHCO3 ingestion. Methods: Male participants (n = 15) with backgrounds in rugby, football or sprinting completed six randomised treatments entailing ingestion of two doses of 0.2 g·kg−1 body mass (BM) NaHCO3 (SBC2a and b), two doses of 0.3 g·kg−1 BM NaHCO3 (SBC3a and b) or two control treatments (CON1a and b) on separate days. Blood analysis included pH, HCO3− and Na+ prior to and at regular time points following NaHCO3 ingestion over a 3-h period. Results: HCO3− displayed greater reproducibility than pH in intraclass correlation coefficient (ICC) analysis for both TTP (HCO3− SBC2 r = 0.77, P = 0.003; SBC3 r = 0.94, P < 0.001; pH SBC2 r = 0.62, P = 0.044; SBC3 r = 0.71, P = 0.016) and absolute change (HCO3− SBC2 r = 0.89, P < 0.001; SBC3 r = 0.76, P = 0.008; pH SBC2 r = 0.84, P = 0.001; SBC3 r = 0.62, P = 0.041). Conclusion: Our results indicate that both TTP and absolute change in HCO3− is more reliable than pH. As such, these data provide support for an individualised NaHCO3 ingestion strategy to consistently elicit peak alkalosis before exercise. Future work should utilise an individualised NaHCO3 ingestion strategy based on HCO3− responses and evaluate effects on exercise performance
Differential effects of purified low molecular weight Poly(I:C) in the maternal immune activation model depend on the laboratory environment.
The Poly (I:C) (polyriboinosinic-polyribocytidilic acid) paradigm of maternal immune activation (MIA) is most widely used as experimental model for the evaluation of the effects of gestational infection on the brain and behavior of the progeny. We have previously reported significant batch-to-batch variability in the effects of Poly (I:C), purchased from the same supplier (Sigma-Aldrich), on maternal and fetal immune responses and found these differences to be dependent on the relative amount of synthetic double-stranded RNA fragments in the high versus low molecular weight (LMW) range contained in the compound. We here resorted to Poly (I:C) purified for LMW dsRNA fragments to establish a MIA paradigm with increased reproducibility and enhanced standardization in an effort to refine the MIA paradigm and characterize its effect on offspring behavior. We found that the parallel application of LMW Poly (I:C) in two different MIA-experienced laboratories (Vienna and Zurich) yielded differential outcomes in terms of maternal immune responses and behavioral phenotypes in the offspring generation. In both experimental sites, administration of LMW Poly (I:C) induced a significant sickness response and cytokine induction in the pregnant dam and fetal brains, while the expected deficit in sociability as one main behavioral outcome parameter in the MIA progeny, was only present in the Zurich, but not the Vienna cohort. We conclude that although using Poly (I:C) purified for a defined molecular weight range reduces batch-to-batch variability, it does not make the MIA model more reliable and robust. The differential response in behavioral phenotypes of the MIA offspring between the two laboratories illustrates the highly complex interaction between prenatal and postnatal milieus - including the laboratory environment - that determine offspring phenotypic outcomes after MIA. Consequently, establishing a new MIA protocol or implementing the MIA model firstly under new or changed environmental conditions must include the assessment of offspring behavior to ensure solid and reproducible experimental outcomes
Mesoscopic model for DNA G-quadruplex unfolding
[EN] Genomes contain rare guanine-rich sequences capable of assembling into four-stranded helical structures, termed G-quadruplexes, with potential roles in gene regulation and chromosome stability. Their mechanical unfolding has only been reported to date by all-atom simulations, which cannot dissect the major physical interactions responsible for their cohesion. Here, we propose a mesoscopic model to describe both the mechanical and thermal stability of DNA G-quadruplexes, where each nucleotide of the structure, as well as each central cation located at the inner channel, is mapped onto a single bead. In this framework we are able to simulate loading rates similar to the experimental ones, which are not reachable in simulations with atomistic resolution. In this regard, we present single-molecule force-induced unfolding experiments by a high-resolution optical tweezers on a DNA telomeric sequence capable of adopting a G-quadruplex conformation. Fitting the parameters of the model to the experiments we find a correct prediction of the rupture-force kinetics and a good agreement with previous near equilibrium measurements. Since G-quadruplex unfolding dynamics is halfway in complexity between secondary nucleic acids and tertiary protein structures, our model entails a nanoscale paradigm for non-equilibrium processes in the cell.Work supported by the Spanish Ministry of Economy and Competitiveness (MINECO), grant No. FIS2014-55867, co-financed by FEDER funds. We also thank the support of the Aragon Government and Fondo Social Europeo to FENOL group. Work in J.R.A.-G. laboratory was supported by a grant from MINECO, No. MAT2015-71806-R).Bergues-Pupo, A.; Gutiérrez, I.; Arias-Gonzalez, JR.; Falo, F.; Fiasconaro, A. (2017). Mesoscopic model for DNA G-quadruplex unfolding. Scientific Reports. 7:1-13. https://doi.org/10.1038/s41598-017-10849-2S1137Arias-Gonzalez, J. R. Single-molecule portrait of DNA and RNA double helices. Integr. 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The intracellular detection of MIP-1beta enhances the capacity to detect IFN-gamma mediated HIV-1-specific CD8 T-cell responses in a flow cytometric setting providing a sensitive alternative to the ELISPOT
<p>Abstract</p> <p>Background</p> <p>T-cell mediated immunity likely plays an important role in controlling HIV-1 infection and progression to AIDS. Several candidate vaccines against HIV-1 aim at stimulating cellular immune responses, either alone or together with the induction of neutralizing antibodies, and assays able to measure CD8 and CD4 T-cell responses need to be implemented. At present, the IFN-γ-based ELISPOT assay is considered the gold standard and it is broadly preferred as primary assay for detection of antigen-specific T-cell responses in vaccine trials. However, in spite of its high sensitivity, the measurement of the sole IFN-γ production provides limited information on the quality of the immune response. On the other hand, the introduction of polychromatic flow-cytometry-based assays such as the intracellular cytokine staining (ICS) strongly improved the capacity to detect several markers on a single cell level.</p> <p>Results</p> <p>The cumulative analysis of 275 samples from 31 different HIV-1 infected individuals using an ICS staining procedure optimized by our laboratories revealed that, following antigenic stimulation, IFN-γ producing T-cells were also producing MIP-1β whereas T-cells characterized by the sole production of IFN-γ were rare. Since the analysis of the combination of two functions decreases the background and the measurement of the IFN-γ+ MIP-1β+ T-cells was equivalent to the measurement of the total IFN-γ+ T-cells, we adopted the IFN-γ+ MIP-1β+ data analysis system to evaluate IFN-γ-based, antigen-specific T-cell responses. Comparison of our ICS assay with ELISPOT assays performed in two different experienced laboratories demonstrated that the IFN-γ+ MIP-1β+ data analysis system increased the sensitivity of the ICS up to levels comparable to the sensitivity of the ELISPOT assay.</p> <p>Conclusion</p> <p>The IFN-γ+ MIP-1β+ data evaluation system provides a clear advantage for the detection of low magnitude HIV-1-specific responses. These results are important to guide the choice for suitable highly sensitive immune assays and to build reagent panels able to accurately characterize the phenotype and function of responding T-cells. More importantly, the ICS assay can be used as primary assay to evaluate HIV-1-specific responses without losing sensitivity in comparison to the ELISPOT assay.</p
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