Local chromosome context is a major determinant of crossover pathway biochemistry during budding yeast meiosis

The budding yeast genome contains regions where meiotic recombination initiates more frequently than in others. This pattern parallels enrichment for the meiotic chromosome axis proteins Hop1 and Red1. These proteins are important for Spo11-catalyzed double strand break formation; their contribution to crossover recombination remains undefined. Using the sequencespecific VMA1-derived endonuclease (VDE) to initiate recombination in meiosis, we show that chromosome structure influences the choice of proteins that resolve recombination intermediates to form crossovers. At a Hop1-enriched locus, most VDE-initiated crossovers, like most Spo11- initiated crossovers, required the meiosis-specific MutLg resolvase. In contrast, at a locus with lower Hop1 occupancy, most VDE-initiated crossovers were MutLg-independent. In pch2 mutants, the two loci displayed similar Hop1 occupancy levels, and VDE-induced crossovers were similarly MutLg-dependent. We suggest that meiotic and mitotic recombination pathways coexist within meiotic cells, and that features of meiotic chromosome structure determine whether one or the other predominates in different regions

Coexistence of magnetism and superconductivity in a t-J bilayer

We investigate coexistence of antiferromagnetic and superconducting correlations in bilayered materials using a two-dimensional t-J model with couplings across the layers using variational Monte Carlo calculations. It is found that the underdoped regime supports a coexisting phase, beyond which the (d-wave) superconducting state becomes stable. Further, the effects of interplanar coupling parameters on the magnetic and superconducting correlations as a function of hole doping are studied in details. The magnetic correlations are found to diminish with increasing interplanar hopping away from half filling, while the exchange across the layers strengthens interplanar antiferromagnetic correlations both at and away from half filling. The superconducting correlations show more interesting features where larger interplanar hopping considerably reduces planar correlations at optimal doping, while an opposite behaviour, i.e. stabilisation of the superconducting state is realised in the overdoped regime, with the interplanar exchange all the while playing a dormant role.Comment: 8 pages, 9 figures, RevTex4, Submitted to Phys. Rev.

The Barrier Method: A Technique for Calculating Very Long Transition Times

In many dynamical systems there is a large separation of time scales between typical events and "rare" events which can be the cases of interest. Rare-event rates are quite difficult to compute numerically, but they are of considerable practical importance in many fields: for example transition times in chemical physics and extinction times in epidemiology can be very long, but are quite important. We present a very fast numerical technique that can be used to find long transition times (very small rates) in low-dimensional systems, even if they lack detailed balance. We illustrate the method for a bistable non-equilibrium system introduced by Maier and Stein and a two-dimensional (in parameter space) epidemiology model.Comment: 20 pages, 8 figure

Physical Electronics and Surface Physics

Contains research objectives, summary of research and reports on two research projects.Joint Services Electronics Programs (U. S. Army, U. S. Navy, and U. S. Air Force) under Contract DAAB07-71-C-0300National Aeronautics and Space Administration (Grant NGR 22-009-091

Multi-wavelength polarimetric study towards the open cluster NGC 1893

We present multi-wavelength linear polarimetric observations for 44 stars of the NGC 1893 young open cluster region along with V-band polarimetric observations of stars of other four open clusters located between l ~160 to ~175 degree. We found evidence for the presence of two dust layers located at a distance of ~170 pc and ~360 pc. The dust layers produce a polarization Pv ~2.2%. It is evident from the clusters studied in the present work that, in the Galactic longitude range l ~160 to 175 degree and within the Galactic plane (|b| < 2 degree), the polarization angles remain almost constant, with a mean ~163 degree and a dispersion of 6 degree. The small dispersion in polarization angle could be due to the presence of uniform dust layer beyond 1 kpc. Present observations reveal that in case of NGC 1893, the foreground two dust layers, in addition to the intracluster medium, seems to be responsible for the polarization effects. It is also found that towards the direction of NGC 1893, the dust layer that exists between 2-3 kpc has a negligible contribution towards the total observed polarization. The weighted mean for percentage of polarization (Pmax) and the wavelength at maximum polarization ({\lambda}max) are found to be 2.59 \pm 0.02% and 0.55 \pm 0.01 \mum respectively. The estimated mean value of {\lambda}max indicates that the average size of the dust grains within the cluster is similar to that in the general interstellar medium. The spatial variation of the polarization is found to decrease towards the outer region of the cluster. In the present work, we support the notion, as already has been shown in previous studies, that polarimetry, in combination with (U-B)/(B-V) colour-colour diagram, is a useful tool for identifying non-members in a cluster.Comment: 36 pages, 12 figures, 10 tables, accepted for the publication in MNRA

The Harmonic Measure for critical Potts clusters

We present a technique, which we call "etching," which we use to study the harmonic measure of Fortuin-Kasteleyn clusters in the Q-state Potts model for Q=1-4. The harmonic measure is the probability distribution of random walkers diffusing onto the perimeter of a cluster. We use etching to study regions of clusters which are extremely unlikely to be hit by random walkers, having hitting probabilities down to 10^(-4600). We find good agreement between the theoretical predictions of Duplantier and our numerical results for the generalized dimension D(q), including regions of small and negative q.Comment: 20 pages, 10 figure

Comparative evaluation of traditional and improved cultivation practices and cultivars of Colocasia esculenta (L.) H. W. Schott in the Borail Hills Range of India

Present work was focused on the comparative evaluation of the Taro tuber productivity by using improved cultivation practices versus traditional cultivation practices. Initially, passport data of all the collected 27 cultivars and wild edible aroids were prepared and their Indigenous Collection Numbers (IC) were procured from the Indian Council of Agricultural Research-National Bureau of Plant Genetic Resources, New Delhi. All the collections were phytochemically evaluated and five variants of Colocasia esculenta (L.) H. W. Schott were found to be superior and their IC Numbers are 0631527, 0631529, 0631536, 0631544 and 0631546. Following the randomised block design method for crop productivity evaluation, data of five nutritionally superior cultivar and one check variety were taken in three replications (R1, R2, R3) from eighteen plots of measuring 5×5 m2 (25 m2). Taro tuber productivity in kg/plant from the first and second year’s data from the ICAR-NBPGR, Umiam and also the farmer’s data from Borail Hills Range were analysed by using SPSS software, and that shows significant difference among all the six treatments/variants under Critical Difference at 5% (CD 5%). Total of the data replications (R1+R2+R3) from first, second year data from ICAR-NBPGR, Umiam and also farmer’s data from Borail Hills Range are 18.24 kg, 19.45 kg and 12.69 kg respectively; clearly showing the tuber productivity enhancement of improved cultivation practices over the traditional agro- practices

Methods for the analysis of ordinal response data in medical image quality assessment.

The assessment of image quality in medical imaging often requires observers to rate images for some metric or detectability task. These subjective results are used in optimisation, radiation dose reduction or system comparison studies and may be compared to objective measures from a computer vision algorithm performing the same task. One popular scoring approach is to use a Likert scale, then assign consecutive numbers to the categories. The mean of these response values is then taken and used for comparison with the objective or second subjective response. Agreement is often assessed using correlation coefficients. We highlight a number of weaknesses in this common approach, including inappropriate analyses of ordinal data, and the inability to properly account for correlations caused by repeated images or observers. We suggest alternative data collection and analysis techniques such as amendments to the scale and multilevel proportional odds models. We detail the suitability of each approach depending upon the data structure and demonstrate each method using a medical imaging example. Whilst others have raised some of these issues, we evaluated the entire study from data collection to analysis, suggested sources for software and further reading, and provided a checklist plus flowchart, for use with any ordinal data. We hope that raised awareness of the limitations of the current approaches will encourage greater method consideration and the utilisation of a more appropriate analysis. More accurate comparisons between measures in medical imaging will lead to a more robust contribution to the imaging literature and ultimately improved patient care

Yak Rearing on High Altitude Pastures of Northeastern Himalaya of India: Their Utilization Strategies and Rejuvenation

Yak rearing on alpine pastures is the main occupation of the highland pastoral nomads (Brokpa and Dokpas) of north-east (NE) India. These pastoral nomads living in the remote mountains solely rely on high altitude pastures for their nutritional and livelihood security because of virtual existence of agricultural activities in this area. They rear yaks under transhumance and utilize various pastures while migrating from low land winter pastures to high altitude alpine pastures during summer. Therefore, the temperate and alpine pastures are the major feed resources for the yaks. The indiscriminate use of pastures and impending climate change results in their degradation that may affect the productivity of the animals reared on them. In this study, an attempt was made to evaluate the status of pastures used for yak rearing in NE India and an initiative has been taken to test the adaptability of palatable high yielding temperate grasses for pasture development and rejuvenation

Counter-current chromatography for the separation of terpenoids: A comprehensive review with respect to the solvent systems employed

Copyright @ 2014 The Authors.This article is distributed under the terms of the Creative Commons Attribution License which permits any use, distribution, and reproduction in any medium, provided the original author(s) and the source are credited.Natural products extracts are commonly highly complex mixtures of active compounds and consequently their purification becomes a particularly challenging task. The development of a purification protocol to extract a single active component from the many hundreds that are often present in the mixture is something that can take months or even years to achieve, thus it is important for the natural product chemist to have, at their disposal, a broad range of diverse purification techniques. Counter-current chromatography (CCC) is one such separation technique utilising two immiscible phases, one as the stationary phase (retained in a spinning coil by centrifugal forces) and the second as the mobile phase. The method benefits from a number of advantages when compared with the more traditional liquid-solid separation methods, such as no irreversible adsorption, total recovery of the injected sample, minimal tailing of peaks, low risk of sample denaturation, the ability to accept particulates, and a low solvent consumption. The selection of an appropriate two-phase solvent system is critical to the running of CCC since this is both the mobile and the stationary phase of the system. However, this is also by far the most time consuming aspect of the technique and the one that most inhibits its general take-up. In recent years, numerous natural product purifications have been published using CCC from almost every country across the globe. Many of these papers are devoted to terpenoids-one of the most diverse groups. Naturally occurring terpenoids provide opportunities to discover new drugs but many of them are available at very low levels in nature and a huge number of them still remain unexplored. The collective knowledge on performing successful CCC separations of terpenoids has been gathered and reviewed by the authors, in order to create a comprehensive document that will be of great assistance in performing future purifications. © 2014 The Author(s)