Substrate-specific clades of active marine methylotrophs associated with a phytoplankton bloom in a temperate coastal environment

Marine microorganisms that consume one-carbon (C1) compounds are poorly described, despite their impact on global climate via an influence on aquatic and atmospheric chemistry. This study investigated marine bacterial communities involved in the metabolism of C1 compounds. These communities were of relevance to surface seawater and atmospheric chemistry in the context of a bloom that was dominated by phytoplankton known to produce dimethylsulfoniopropionate. In addition to using 16S rRNA gene fingerprinting and clone libraries to characterize samples taken from a bloom transect in July 2006, seawater samples from the phytoplankton bloom were incubated with 13C-labeled methanol, monomethylamine, dimethylamine, methyl bromide, and dimethyl sulfide to identify microbial populations involved in the turnover of C1 compounds, using DNA stable isotope probing. The [13C]DNA samples from a single time point were characterized and compared using denaturing gradient gel electrophoresis (DGGE), fingerprint cluster analysis, and 16S rRNA gene clone library analysis. Bacterial community DGGE fingerprints from 13C-labeled DNA were distinct from those obtained with the DNA of the nonlabeled community DNA and suggested some overlap in substrate utilization between active methylotroph populations growing on different C1 substrates. Active methylotrophs were affiliated with Methylophaga spp. and several clades of undescribed Gammaproteobacteria that utilized methanol, methylamines (both monomethylamine and dimethylamine), and dimethyl sulfide. rRNA gene sequences corresponding to populations assimilating 13C-labeled methyl bromide and other substrates were associated with members of the Alphaproteobacteria (e.g., the family Rhodobacteraceae), the Cytophaga-Flexibacter-Bacteroides group, and unknown taxa. This study expands the known diversity of marine methylotrophs in surface seawater and provides a comprehensive data set for focused cultivation and metagenomic analyses in the future

Horizontal miscible displacements through porous media: the interplay between viscous fingering and gravity segregation

We consider miscible displacements in two-dimensional homogeneous porous media where the displacing fluid is less viscous and has a different density than the displaced fluid. We find that the dynamics evolve through nine possible regimes depending on the viscosity ratio, strength of density variations and the strength of the background flow, as characterized by the Péclet number. At early times the interface is dominated by longitudinal diffusion before undergoing a transition to a slumping regime where vertical flow is important. At intermediate times, vertical flow and diffusion can be neglected and there are three different limiting solutions: a fingering limit; an injection-driven gravity-current limit; and a density-driven gravity-current limit. Finally at late times, transverse diffusion becomes important and there is a transition from an apparent shutdown regime to a viscously enhanced Taylor-slumping regime. In each of the regimes, the dominant scalings are identified and reduced-order models for the evolution of the concentration field are developed. Lastly, three case studies are considered to illustrate the dominant physical balances in the geophysically relevant setting of geological CO2 storage

Homogenization induced by chaotic mixing and diffusion in an oscillatory chemical reaction

A model for an imperfectly mixed batch reactor with the chlorine dioxide-iodine-malonic acid (CDIMA) reaction, with the mixing being modelled by chaotic advection, is considered. The reactor is assumed to be operating in oscillatory mode and the way in which an initial spatial perturbation becomes homogenized is examined. When the kinetics are such that the only stable homogeneous state is oscillatory then the perturbation is always entrained into these oscillations. The rate at which this occurs is relatively insensitive to the chemical effects, measured by the Damkohler number, and is comparable to the rate of homogenization of a passive contaminant. When both steady and oscillatory states are stable, spatially homogeneous states, two possibilities can occur. For the smaller Damkohler numbers, a localized perturbation at the steady state is homogenized within the background oscillations. For larger Damkohler numbers, regions of both oscillatory and steady behavior can co-exist for relatively long times before the system collapses to having the steady state everywhere. An interpretation of this behavior is provided by the one-dimensional Lagrangian filament model, which is analyzed in detail

Electromagnetic corrections in the anomaly sector

Chiral perturbation theory in the anomaly sector for $N_f=2$ is extended to include dynamical photons, thereby allowing a complete treatment of isospin breaking. A minimal set of independent chiral lagrangian terms is determined and the divergence structure is worked out. There are contributions from irreducible and also from reducible one-loop graphs, a feature of ChPT at order larger than four. The generating functional is non-anomalous at order $e^2p^4$, but not necessarily at higher order in $e^2$. Practical applications to $\gamma\pi\to\pi\pi$ and to the $\pi^0\to2\gamma$ amplitudes are considered. In the latter case, a complete discussion of the corrections beyond current algebra is presented including quark mass as well as electromagnetic effects.Comment: 26 pages, 3 figure