Designing Strategies to Support a Transformation of Agriculture in Ethiopia

The paper consists of three parts. The first part of the paper is a review of agricultural performance in Ethiopia over the past forty years. The second part diagnoses agricultural system performance and food security problems in Ethiopia and discusses some tentative practical strategies for promoting an agricultural transformation, and with it, increased productivity, income growth, and food security over the long run. The third part describes the general approach to promoting an agricultural transformation and food security for Ethiopia. It is conceptual and procedural. It draws from the lessons of economic history and theory applied to the current situation in Ethiopia.food security, food policy, Ethiopia, Farm Management, Food Security and Poverty, Q18,

Human myiasis in an endemic area of Southwestern Ethiopia: Prevalence, knowledge, perceptions and practices

Background: Human subcutaneous myiasis is an endemic, understudied disease in Ethiopia. Objective: The aim of this study was to assess knowledge, perceptions and practices in different urban and rural communities of Jimma Zone, southwestern Ethiopia, related to human myiasis. Method: A cross-sectional, descriptive, comparative study was carried out during March -June 2005 in 5 urban and 3 rural kebeles in Jimma Zone. Kebeles were chosen by random sampling and a total of 1,272 households were selected by systematic random sampling technique for interview. Results: Most subjects (60.0%) mentioned lying on damp soil as the cause of myiasis. More urban than rural communities who wore un-ironed clothes had myiais infestation (p< 0.05). Myiasis was reported to be common in the lower extremities (65.6%), upper extremities (56.7%), abdomen (48.9%) and back (34.9%). A total of 86% dwellers responded that myiasis was more common during the wet season. More than half of the interviewees were knowledgeable about the clinical presentation of the disease. The most common signs and symptoms were itching (94.0%), pus discharge (82.9 %) and papules (79.5%). The majority (87.9%) of the study subjects treated infestations with hot matches. Wearing dry clothes (38.6%) was reported to be effective preventive measure. Nearly 64.8% of the rural and 68.7% of the urban communities knew that human subcutaneous myiasis is preventable. Conclusion: Due to the low levels of knowledge about myiasis, we recommend that community health education programs be developed through the health services to raise the awareness levels about this infestation to the general population.The Ethiopian Journal of Health Development Vol. 21 (2) 2007: pp. 166-17

Benchmark calculations for elastic fermion-dimer scattering

We present continuum and lattice calculations for elastic scattering between a fermion and a bound dimer in the shallow binding limit. For the continuum calculation we use the Skorniakov-Ter-Martirosian (STM) integral equation to determine the scattering length and effective range parameter to high precision. For the lattice calculation we use the finite-volume method of L\"uscher. We take into account topological finite-volume corrections to the dimer binding energy which depend on the momentum of the dimer. After subtracting these effects, we find from the lattice calculation kappa a_fd = 1.174(9) and kappa r_fd = -0.029(13). These results agree well with the continuum values kappa a_fd = 1.17907(1) and kappa r_fd = -0.0383(3) obtained from the STM equation. We discuss applications to cold atomic Fermi gases, deuteron-neutron scattering in the spin-quartet channel, and lattice calculations of scattering for nuclei and hadronic molecules at finite volume.Comment: 16 pages, 5 figure

Enhanced cell-permeant Cre protein for site-specific recombination in cultured cells

BACKGROUND: Cell-permeant Cre DNA site-specific recombinases provide an easily controlled means to regulate gene structure and function in living cells. Since recombination provides a stable and unambiguous record of protein uptake, the enzyme may also be used for quantitative studies of cis- and trans-acting factors that influence the delivery of proteins into cells. RESULTS: In the present study, 11 recombinant fusion proteins were analyzed to characterize sequences and conditions that affect protein uptake and/or activity and to develop more active cell-permeant enzymes. We report that the native enzyme has a low, but intrinsic ability to enter cells. The most active Cre proteins tested contained either an N-terminal 6xHis tag and a nuclear localization sequence from SV40 large T antigen (HNC) or the HIV Tat transduction sequence and a C-terminal 6xHis tag (TCH(6)). The NLS and 6xHis elements separately enhanced the delivery of the HNC protein into cells; moreover, transduction sequences from fibroblast growth factor 4, HIV Tat or consisting of the (KFF)(3)K sequence were not required for efficient protein transduction and adversely affected enzyme solubility. Transduction of the HNC protein required 10 to 15 min for half-maximum uptake, was greatly decreased at 4°C and was inhibited by serum. Efficient recombination was observed in all cell types tested (a T-cell line, NIH3T3, Cos7, murine ES cells, and primary splenocytes), and did not require localization of the enzyme to the nucleus. CONCLUSIONS: The effects of different sequences on the delivery and/or activity of Cre in cultured cells could not be predicted in advance. Consequently, the process of developing more active cell-permeant recombinases was largely empirical. The HNC protein, with an excellent combination of activity, solubility and yield, will enhance the use of cell-permeant Cre proteins to regulate gene structure and function in living cells

Targeting the Role of Tyrosine in Amot Protein-Lipid Binding Events

poster abstractAngiomotins (Amots) are a family of adaptor proteins that have been shown to control cell proliferation and differentiation. Amots can selectively bind with high affinity to phosphoinositol containing membranes through the Amot coiled-coil homology (ACCH) domain. This binding event is linked to endocytosis, changes in cellular polarity, and apical membrane sequestration of nuclear transcription factors associated with development of cancerous phenotypes. Although the lipid selectivity of the protein has been well characterized, the residues involved in the ACCH domain binding these membranes have not been fully described. Understanding the structure-function relationship may provide pathways to modulate protein sorting and downstream signaling events inducing cellular differentiation, cancer cell proliferation, and migration. The fluorescent properties of the ACCH domain were previously used to characterize the binding event. However, the relative proximity of the five native tyrosines to the membrane may have led to differences in perceived lipid binding affinities based on fluorescence resonance energy transfer with fluorescently tagged lipids. A variety of short peptides correlating to the amino acid sequence of Amot surrounding these tyrosines were assayed and observed in different membrane mimicking environments. This was done to determine if each tyrosine had the ability to bury into the hydrophobic region of the membrane mimicked by the carbon chain lengths (alcohol study), or simply interacted with the hydrophilic head groups of the lipid (liposome study). In addition, the full length Amot80 ACCH domains (wild-type and tyrosine-to-phenylalanine mutants) were screened for trends in the varying environments. Interactions were characterized by shifts in maximum wavelengths for absorbance, excitation and emission peaks. A characterization of these shifts with respect to what is seen with the various tyrosine and phenalanine mutants may further our understanding of whether each tyrosine is buried within the protein or interacts with the head groups of the membrane

Evaluation of Community-Based Trichiasis Surgery in Northwest Ethiopia

Background: Surgery to correct trachomatous trichiasis (TT) is recommended to prevent blindness caused by trachoma. This study evaluated the outcomes of community-based trichiasis surgery with absorbable sutures, conductd in Amhara Regional State, Ethiopia.Methods: A simple random sample of 431 patients was selected from surgical campaign records of which 363 (84.2%) were traced and enrolled into the study. Participants were interviewed and examined for trichiasis recurrence, complications of TT surgery and corneal opacity. Multilevel logistic regression models were used to explore the associations between trichiasis recurrence, corneal opacity and explanatory variables at the eye level.Results: The prevalence of trichiasis recurrence was 9.4% (95% Confidence Interval [CI] 6.6-12.8) and corneal opacity was found in 14.3% (95% CI 10.9-18.3) of the study participants. The proportion of participants with complications of TT surgery was: granuloma 0.6% (95% CI 0.1-2.0); lid closure defects 5.5% (95% CI 3.4-8.4) and lid notching 16.8% (95% CI 13.1-21.1). No factors were identified for trichiasis recurrence. Corneal opacity was associated with increased age (Ptrend=0.001), more than 12 months post surgery (OR=2.7; 95%CI 1.3-5.6), trichiasis surgery complications (OR=2.9; 95%CI 1.4-5.9) and trichiasis recurrence (OR=2.5; 95%CI 1.0-6.3).Conclusion: Prevalence of recurrent trichiasis and granuloma were lower than expected but higher for lid closure defects and lid notching. The majority of the participants reported satisfaction with the trichiasis surgery they had undergone. The findings suggest that recurrence of trichiasis impacts on the patients’ risk of developing corneal opacity but longitudinal studies are required to confirm this.Keywords: Corneal opacity, Trichiasis, Trichiasis recurrence, Ethiopi

Minutes of UNO Fellowship & Scholarship Review Committee Meeting

Applications were distributed and the scoring process was described. Each application received three completed reviews. The total score was then computed and applications were ranked in based on the total score. Brent Bowen abstained from voting on the entire undergraduate process. The committee agreed that in the event of a tie, the decision will be made by a higher level authority. Lincoln engineering student applications were deferred to the UNL competition. Michaela Schaaf presented the underrepresented scholarship procedures for approval by the committee. The scholarship was advertised to all high school liaisons as a new scholarship which all students are eligible for, but preference will be given to underrepresented minorities. A summer research internship will be provided to a student who has typically completed their junior year. Upon successful completion of the internship and satisfactory academic performance, a four-year tuition and fees scholarship will be awarded to UNO for the aviation or space related field. The committee approved the process. (UNO\u27s Aviation Institute will contribute an out-of-state tuition waiver each year when applicable. Approved Dec. 16, 1996) The committee approved a new policy under which research scholars will not accumulate more than two weeks of time owed to a project. This will ensure that students do not have too large a load at the end of the semester. If no research work is available, the award will be reallocated. The committee approved the following travel grants as awarded. Fred Hansen, Graduate Student, awarded to attend the FAA Explosives Detection Technology and Aviation Security Technology Convention from Year 5 funds. Becky Lutte, Aviation Institute, awarded to attend the Global Aviation Safety and Security Conference from year 5 funds. Peter Suzuki, Urban Studies, awarded to attend the Transportation Research Board Meeting from year 5 funds. Willa Bruce, Public Administration, awarded to attend the Society for Practical and Professional Ethics Annual Conference and to present her Space Grant research paper from year 6 funds. The following students were awarded as a result of the review committee=s ranking. Further details of the committee=s ranking are available from the Nebraska Space Grant and EPSCoR Office if necessary. (These are not in any specific order.) Under represented Research: Darnetta Sanders (H.S. Senior) and Jacquelyn Jones (H.S. Junior) Undergraduate Research: John Carrico, Shadric Thomas, Joe Bell and Lyle Jones Undergraduate Course Work: Ben McPeck, Mary Schaffart Undergraduate Flight: Antonia Krajicek Graduate Research: Becky Lutte, Fred Hansen, Amanda Talmadge, Duane Boyle, Scott Vlasek, Alicia Martin and Aimee Freeman, Tim Gleason, Jr. Graduate Course Work: John Papazafiropoulos, June Evans, Mike Turner, Ron Bojanski, Steve Morrissett

Binding of the Bacillus subtilis LexA protein to the SOS operator

The Bacillus subtilis LexA protein represses the SOS response to DNA damage by binding as a dimer to the consensus operator sequence 5′-CGAACN(4)GTTCG-3′. To characterize the requirements for LexA binding to SOS operators, we determined the operator bases needed for site-specific binding as well as the LexA amino acids required for operator recognition. Using mobility shift assays to determine equilibrium constants for B.subtilis LexA binding to recA operator mutants, we found that several single base substitutions within the 14 bp recA operator sequence destabilized binding enough to abolish site-specific binding. Our results show that the AT base pairs at the third and fourth positions from the 5′ end of a 7 bp half-site are essential and that the preferred binding site for a LexA dimer is 5′-CGAACATATGTTCG-3′. Binding studies with LexA mutants, in which the solvent accessible amino acid residues in the putative DNA binding domain were mutated, indicate that Arg-49 and His-46 are essential for binding and that Lys-53 and Ala-48 are also involved in operator recognition. Guided by our mutational analyses as well as hydroxyl radical footprinting studies of the dinC and recA operators we docked a computer model of B.subtilis LexA on the preferred operator sequence in silico. Our model suggests that binding by a LexA dimer involves bending of the DNA helix within the internal 4 bp of the operator