Seafloor Segmentation Based on Bathymetric Measurements from Multibeam Echosounders Data

Bathymetric data depicts the geomorphology of the seabottom and allows characterization of spatial distributions of apparent benthic habitats. The variability of seafloor topography can be defined as a texture. This prompts for the application of well developed image processing techniques for automatic delineation of regions with clucially different physiographic characteristics. In the present paper histograms of biologically motivated invariant image attributes are used for characterization of local geomorphological feahires. This technique can be naturally applied in a range of spatial scales. Local feature vectors are then submitted to a procedure which divides the set into a number of clusters each representing a distinct type of the seafloor. Prior knowledge about benthic habitat locations allows the use of supervised classification, by training a Suppolt Vector Machine on a chosen data set, and then applying the developed model to a full set. The classification method is shown to perform well on the multibeam echosounder (MBES) data from Piscataqua River, New Hampshire, USA

Intercalibraton in Chemical Oceanography-- Getting The Right Number

Intercalibration has a strict metrological definition, but in brief, it\u27s an open sharing of methods and results between laboratories to achieve the most accurate data with the fewest random and systematic errors. In the field of chemical oceanography where concentrations of many constituents can be in the nano- to picomolar range, the salt water matrix can be difficult to analyze, and knowing the exact concentrations, or even chemical forms, of biologically required elements is essential, intercalibration is a very relevant and needed tool. Implementing it is not simple because errors can occur at any step in the process of taking a water or particle sample, handling and processing it, and finally analyzing it and treating the resulting data. The international GEOTRACES program provides a good example of implementing intercalibration for studies of dissolved and particulate trace elements and isotopes, and is described here

Metalloids in Wet Deposition on Bermuda: Concentrations, Sources, and Fluxes

The concentrations of antimony, arsenic, and selenium were determined in wet deposition samples collected on a daily (event) basis from 1988 to 1990 on Bermuda as a part of the Atmosphere/Ocean Chemistry Experiment (AEROCE). Isentropic back trajectories were used to identify air masses that passed over North America (59% of the events), Europe or North Africa (8%), or were largely marine in origin (33% of the events). The North American trajectories had the highest volume-weighted average (VWA) concentrations and crustal enrichment factors for the three metalloids; the As/Se ratio and good correlations with acidity suggest inputs from fossil fuel combustion. The Euro-African trajectories had the lowest VWA concentrations and enrichment factors that approached crustal values, indicating mineral aerosol inputs; values for marine events fell between these two extremes. The atmospheric flux of metalloids to the western Atlantic Ocean represents a major source of these elements in surface waters (up to 100% for Sb and Se; up to 61% for As) and a corresponding sink in their global atmospheric budgets

Trace Elements in Estuarine and Coastal Waters: U.S. Studies from 1986-1990

The use of specialized analytical techniques, field studies, controlled laboratory experiments, and geochemical modeling have allowed U.S. investigators to expand our understanding of trace element cycling in coastal waters and estuaries. Considerable emphasis has been placed on quantifying the flux of trace elements within and through the coastal zone. In addition, substantial progress has been made in identifying the chemical speciation of many trace elements, providing a linkage between the geochemical and biochemical behavior of these elements. Another significant advance has been the use of trace elements as tracers of geochemical processes and water masses in the coastal environment

Sources And Cycling of Carbonyl Sulfide in the Sargasso Sea

The cycling of the radiatively important gas carbonyl sulfide (OCS) was studied in surface waters of the Sargasso Sea. In August 1999, surface OCS concentrations averaged 8.6 pmol L-1, showed minor diel variations, and varied little with depth. An OCS precursor, total dissolved organic sulfur (DOS), was lowest at the surface (40 nmol L-1) and increased with depth. The photoproduction rate of OCS from in situ incubations averaged 9.6 pmol L-1 h-1, whereas dark production was 7.0 pmol L-1 h-1. Apparent quantum yields were 10-5-10-7 from 313-436 nm and varied with the water depth irradiated. In March 2000, there were strong diel variations in surface OCS (highest in late afternoon; overall average, 16.9 pmol L-1). Depth profiles in the afternoon showed surface water maxima and decreases with depth, whereas DOS had a surface maximum of 419 nmol L-1 and decreased with depth. Dark production was 4.0 pmol L-1 h-1. Modeling of the diel cycle suggested a photoproduction rate of 16.4 pmol L-1 h-1. Overall, the photochemical production of OCS strongly depended on DOS and chromophoric dissolved organic matter, whereas dark production was influenced by the presence of particles and perhaps microbial respiration, showing a direct biotic influence on OCS cycling

Sensor-assisted Video Mapping of the Seafloor

In recent years video surveys have become an increasingly important ground-truthing of acousticseafloor characterization and benthic habitat mapping studies. However, the ground-truthing and detailed characterization provided by video are still typically done using sparse sample imagery supplemented by physical samples. Combining single video frames in a seamless mosaic can provide a tool by which imagery has significant areal coverage, while at the same time showing small fauna and biological features at mm resolution. The generation of such a mosaic is a challenging task due to height variations of the imaged terrain and decimeter scale knowledge of camera position. This paper discusses the current role of underwater video survey, and the potential for generating consistent, quantitative image maps using video data, accompanied by data that can be measured by auxiliary sensors with sufficient accuracy, such as camera tilt and heading, and their use in automated mosaicking techniques. The camera attitude data also provide the necessary information to support the development of a video collage. The collage provides a quick look at the large spatial scale features in a scene and can be used to pinpoint regions that are likely to yield useful information when rendered into high-resolution mosaics. It is proposed that high quality mosaics can be produced using consumer-grade cameras and low-cost sensors, thereby allowing for the economical scientific video surveys. A case study is presented with the results from benthic habitat mapping and the ground-truthing ofseafloor acoustic data using both real underwater imagery and simulations. A computer modeling of the process of video data acquisition (in particular on a non-flat terrain) allows for a better understanding of the main sources of error in mosaic generation and for the choice of near-optimal processing strategies. Various spatial patterns of video survey coverage are compared and it is shown that some patterns have certain advantages in the sense of accumulated error and overall mosaic accuracy

Biogeochemistry of Arsenic and Antimony in the North Pacific Ocean

The biogeochemical cycles of the metalloid elements arsenic and antimony were examined along a 15,000 km surface water transect and at 9 vertical profile stations in the western North Pacific Ocean as part of the 2002 IOC Contaminant Baseline Survey. Results show that the speciation of dissolved arsenic (As III, As V, and methylated As) was subtly controlled by the arsenate (AsV)/phosphate ratio. An additional fraction of presumed organic arsenic previously reported in coastal waters was also present (~15% of the total As) in oceanic surface waters. Dissolved inorganic antimony displayed mildly scavenged behavior that was confirmed by correlations with aluminum, but atmospheric inputs that may be anthropogenic in origin also affected its concentrations. Monomethyl antimony, the predominant organic form of the element, behaved almost conservatively throughout the water column, radically changing the known biogeochemical cycle of antimony

High Resolution Determination of Nanomolar Concentrations of Dissolved Reactive Phosphate in Ocean Surface Waters Using Long Path Liquid Waveguide Capillary Cells (LWCC) and Spectrometric Detection

In the last decade, long path length, low volume, liquid waveguide capillary cells (LWCC) in conjunction with conventional nutrient auto-analyzers have been applied to determinations of nanomolar levels of phosphate, nitrate, and nitrite in oligotrophic waters. This article reports a high resolution, real-time, continuous method for nanomolar dissolved reactive phosphate measurements in ocean surface waters with data logging every 30 seconds for up to 16 consecutive hours. Surface seawater is pumped continuously from a shipboard underway tow-fish unit to a helium gas-segmented, continuous-flow, nutrient auto-analyzer modified with a 250 cm LWCC. To circumvent baseline instability due to reagents, a parallel channel with deionized water (DI) and reagents is run and later subtracted from the sample absorbances. The detection limit is 0.8 nmol/L. The precision (as relative standard deviation) at 5 nmol/L phosphate is 6.1% (n = 5) and 0.8% (n = 5) at 50 nmol/L. We also report an optimized method for discrete samples using a 200 cm LWCC. To minimize any background phosphate concentration in low nutrient seawater used as wash water solution, we use DI water, but increase sample and wash times to achieve plateau-shaped peaks after the transient wash/sample mixing period. The detection limit is 0.5 nmol/L. The precision at 10 nmol/L phosphate is 1.8% (n = 8) and 0.9% (n = 9) at 60 nmol/L. The two systems have successfully been deployed on the U.S. GEOTRACES 2010 cruise, transecting the upwelling area northwest of Africa and the highly stratified, oligotrophic, subtropical North Atlantic gyre

Organic sulfur: a spatially variable and understudied component of marine organic matter

© The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Longnecker, K., Oswald, L., Soule, M. C. K., Cutter, G. A., & Kujawinski, E. B. Organic sulfur: a spatially variable and understudied component of marine organic matter. Limnology and Oceanography Letters, (2020), doi:10.1002/lol2.10149.Sulfur (S) is a major heteroatom in organic matter. This project evaluated spatial variability in the concentration and molecular‐level composition of organic sulfur along gradients of depth and latitude. We measured the concentration of total organic sulfur (TOS) directly from whole seawater. Our data reveal high variability in organic sulfur, relative to established variability in total organic carbon or nitrogen. The deep ocean contained significant amounts of organic sulfur, and the concentration of TOS in North Atlantic Deep Water (NADW) decreased with increasing age while total organic carbon remained stable. Analysis of dissolved organic matter extracts by ultrahigh resolution mass spectrometry revealed that 6% of elemental formulas contained sulfur. The sulfur‐containing compounds were structurally diverse, and showed higher numbers of sulfur‐containing elemental formulas as NADW moved southward. These measurements of organic sulfur in seawater provide the foundation needed to define the factors controlling organic sulfur in the global ocean.We thank Catherine Carmichael, Winifred Johnson, and Gretchen Swarr for assistance with sample collection and processing, and Joe Jennings for the analysis of inorganic nutrients. The help of the captain and crew of the R/V Knorr and the other cruise participants during the “DeepDOM” cruise is appreciated. Two anonymous reviewers and Patricia Soranno provided thorough comments that greatly improved the manuscript. The ultrahigh resolution mass spectrometry samples were analyzed at the WHOI FT‐MS Users' Facility that is funded by the National Science Foundation (grant OCE‐0619608) and the Gordon and Betty Moore Foundation (GMBF1214). This project was funded by NSF grants OCE‐1154320 (to EBK and KL), the W.M. Marquet Award (to KL), and OCE‐1435708 (to GAC). The authors declare no conflicts of interest