Application of aspen MADS-box genes to alter reproduction and development in trees

The present invention provides compositions and methods for producing a transgenic plant that exhibits altered characteristics resulting from over expression or under expression of a novel polypeptide PtM3 or its homolog PtM4. The altered characteristics resulting from over-expression include at least one of the ability to convert axillary mer- istem to floral meristem; to accelerate flowering i.e., early flowering; to increase fruit production; to increase nut production; to increase seed output; to increase branching; to increase flower production; to increase fruit yield; to increase flower yield and a combination thereof. The altered characteristics resulting from suppressed expression include at least one of complete sterility; partial sterility (sterility of only one sex of a bisexual plant); reduced pollen production; decreased flowering; increased biomass and combinations thereof. Furthermore, once the transgenic plant is sterile, additional exogenous sequences may be incorporated into the sterile plant genome, resulting in other desired plant characteristics. Related promoter, gene constructs, methods, antibodies and kits are also provided.https://digitalcommons.mtu.edu/patents/1041/thumbnail.jp

Global agricultural intensification during climate change: a role for genomics

Agriculture is now facing the ‘perfect storm’ of climate change, increasing costs of fertilizer and rising food demands from a larger and wealthier human population. These factors point to a global food deficit unless the efficiency and resilience of crop production is increased. The intensification of agriculture has focused on improving production under optimized conditions, with significant agronomic inputs. Furthermore, the intensive cultivation of a limited number of crops has drastically narrowed the number of plant species humans rely on. A new agricultural paradigm is required, reducing dependence on high inputs and increasing crop diversity, yield stability and environmental resilience. Genomics offers unprecedented opportunities to increase crop yield, quality and stability of production through advanced breeding strategies, enhancing the resilience of major crops to climate variability, and increasing the productivity and range of minor crops to diversify the food supply. Here we review the state of the art of genomic-assisted breeding for the most important staples that feed the world, and how to use and adapt such genomic tools to accelerate development of both major and minor crops with desired traits that enhance adaptation to, or mitigate the effects of climate change

Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects

Climate change affects agricultural productivity worldwide. Increased prices of food commodities are the initial indication of drastic edible yield loss, which is expected to increase further due to global warming. This situation has compelled plant scientists to develop climate change-resilient crops, which can withstand broad-spectrum stresses such as drought, heat, cold, salinity, flood, submergence and pests, thus helping to deliver increased productivity. Genomics appears to be a promising tool for deciphering the stress responsiveness of crop species with adaptation traits or in wild relatives toward identifying underlying genes, alleles or quantitative trait loci. Molecular breeding approaches have proven helpful in enhancing the stress adaptation of crop plants, and recent advances in high-throughput sequencing and phenotyping platforms have transformed molecular breeding to genomics-assisted breeding (GAB). In view of this, the present review elaborates the progress and prospects of GAB for improving climate change resilience in crops, which is likely to play an ever increasing role in the effort to ensure global food security

Molecular biology of floral scent evolution: Characterization of linalool synthase (LIS) in diverse species.

Flowers of Clarkia breweri as well as many other species emit linalool, an acyclic monoterpene, as part of the scent volatile mixture that attracts pollinators. Surprisingly, it is not uncommon for scented species to evolve from nonscented species. C. breweri, for example, has evolved relatively recently from an extant nonscented species, Clarkia concinna. Despite the importance of floral scent to the survival of many angiosperms, none of the enzymes or genes involved in the production of any floral scent compound had been characterized at the start of this project. Hence, this project focuses on one such enzyme, linalool synthase (LIS), and examines the general question of how nonscented species can give rise to scented species thereby changing the plant's specific pollinator. A cDNA of LIS1, the gene encoding LIS in C. breweri, was isolated, and subsequent Northern blots, in situ hybridizations, and Western blots showed that the strong floral scent of C. breweri is the result of (1) upregulation of a preexisting C. concinna LIS gene at the level of nucleic acid and (2) expansion of the types of tissues that express this gene. Organelle preparations treated with proteinase K, subcellular fractionations, and immunogold localizations together show that leucoplasts are the subcellular location of LIS1. However, although the N-terminus of LIS has the characteristics of a plastid targeting sequence, only a maximum of 8 amino acids are cleaved from the mature protein. Thus, LIS1 appears to have a non-cleavable plastid targeting sequence. LIS and LIS-like (LSL) genes isolated from C. breweri, C. concinna, Oenothera arizonica, and Arabidopsis thaliana encode proteins that are 40-96% identical to each other and have 11 introns in identical positions. Comparisons of these sequences with the sequences of other terpene synthases show that LIS and LSL are composite genes which evolved from a cross-over event between two different types of terpene synthases. Although known to occur, this is the first time such domain swapping has been demonstrated in terpene synthases. This study shows how scent can evolve in a relatively simple way through up-regulation of pre-existing genes and suggests that the combined evolutionary mechanisms of duplication, followed by divergence and/or domain swapping, may explain the extraordinarily large diversity of proteins found in the plant terpene synthase family.Ph.D.BiochemistryBiological SciencesBotanyGeneticsMolecular biologyPure SciencesUniversity of Michigan, Horace H. Rackham School of Graduate Studieshttp://deepblue.lib.umich.edu/bitstream/2027.42/131184/2/9840518.pd

Imaging Nutrient Distribution in the Rhizosphere Using FTIR Imaging

Symbiotic associations in the rhizosphere between plants and microorganisms lead to efficient changes in the distribution of nutrients that promote growth and development for each organism involved. Understanding these nutrient fluxes provides insight into the molecular dynamics involved in nutrient transport from one organism to the other. To study such a nutrient flow, a new application of Fourier transform infrared imaging (FTIRI) was developed that entailed growing <i>Populus tremulodes</i> seedlings on a thin, nutrient-enriched Phytagel matrix that allows pixel to pixel measurement of the distribution of nutrients, in particular, nitrate, in the rhizosphere. The FTIR spectra collected from ammonium nitrate in the matrix indicated the greatest changes in the spectra at 1340 cm^–1 due to the asymmetric stretching vibrations of nitrate. For quantification of the nitrate concentration in the rhizosphere of experimental plants, a calibration curve was generated that gave the nitrate concentration at each pixel in the chemical image. These images of the poplar rhizosphere showed evidence for symbiotic sharing of nutrients between the plant and the fungi, <i>Laccaria bicolor</i>, where the nitrate concentration was five times higher near mycorrhizal roots than further out into the rhizosphere. This suggested that nitrates are acquired and transported from the media toward the plant root by the fungi. Similarly, the sucrose used in the growth media as a carbon source was depleted around the fungi, suggesting its uptake and consumption by the system. This study is the first of its kind to visualize and quantify the nutrient availability associated with mycorrhizal interactions, indicating that FTIRI has the ability to monitor nutrient changes with other microorganisms in the rhizosphere as a key step for understanding nutrient flow processes in more diverse biological systems

Natural products from plants

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Global agricultural intensification during climate change: a role for genomics.

Agriculture is now facing the 'perfect storm' of climate change, increasing costs of fertilizer and rising food demands from a larger and wealthier human population. These factors point to a global food deficit unless the efficiency and resilience of crop production is increased. The intensification of agriculture has focused on improving production under optimized conditions, with significant agronomic inputs. Furthermore, the intensive cultivation of a limited number of crops has drastically narrowed the number of plant species humans rely on. A new agricultural paradigm is required, reducing dependence on high inputs and increasing crop diversity, yield stability and environmental resilience. Genomics offers unprecedented opportunities to increase crop yield, quality and stability of production through advanced breeding strategies, enhancing the resilience of major crops to climate variability, and increasing the productivity and range of minor crops to diversify the food supply. Here we review the state of the art of genomic-assisted breeding for the most important staples that feed the world, and how to use and adapt such genomic tools to accelerate development of both major and minor crops with desired traits that enhance adaptation to, or mitigate the effects of climate change

Application of genomics-assisted breeding for generation of climate resilient crops: progress and prospects.

Climate change affects agricultural productivity worldwide. Increased prices of food commodities are the initial indication of drastic edible yield loss, which is expected to increase further due to global warming. This situation has compelled plant scientists to develop climate change-resilient crops, which can withstand broad-spectrum stresses such as drought, heat, cold, salinity, flood, submergence and pests, thus helping to deliver increased productivity. Genomics appears to be a promising tool for deciphering the stress responsiveness of crop species with adaptation traits or in wild relatives toward identifying underlying genes, alleles or quantitative trait loci. Molecular breeding approaches have proven helpful in enhancing the stress adaptation of crop plants, and recent advances in high-throughput sequencing and phenotyping platforms have transformed molecular breeding to genomics-assisted breeding (GAB). In view of this, the present review elaborates the progress and prospects of GAB for improving climate change resilience in crops, which is likely to play an ever increasing role in the effort to ensure global food security