Pink‐ and orange‐pigmented Planctomycetes produce saproxanthin‐type carotenoids including a rare C45 carotenoid

Planctomycetes, are ubiquitous and environmentally important Gram-negative aquatic bacteria with key roles in global carbon and nitrogen cycles. Many planctomycetal species have a pink or orange colour and have been suggested to produce carotenoids. Potential applications as food colorants or anti-oxidants have been proposed. Hitherto, the planctomycetal metabolism is largely unexplored and the strain pigmentation has not been identified. For a holistic view on the complex planctomycetal physiology we analyzed carotenoid profiles of the pink-pigmented strain Rhodopirellula rubra LF2T and of the orange strain Rubinisphaera brasiliensis Gr7. During LC-MS/MS analysis of culture extracts we were able to identify three saproxanthin-type carotenoids including a rare C45 carotenoid. These compounds, saproxanthin, dehydroflexixanthin and 2’-isopentenyldehydrosaproxanthin, derive from the common carotenoid precursor lycopene and are characterized by related end groups, namely a 3-hydroxylated β-carotene-like cyclohexene ring as one end group and simple hydration on the other end of the molecule. Based on the observed molecule structure we present putative pathways for their biosynthesis. Results support Planctomycetes as a promising, yet mostly untapped source of carotenoids

Recoil Polarization for Delta Excitation in Pion Electroproduction

We measured angular distributions of recoil-polarization response functions for neutral pion electroproduction for W=1.23 GeV at Q^2=1.0 (GeV/c)^2, obtaining 14 separated response functions plus 2 Rosenbluth combinations; of these, 12 have been observed for the first time. Dynamical models do not describe quantities governed by imaginary parts of interference products well, indicating the need for adjusting magnitudes and phases for nonresonant amplitudes. We performed a nearly model-independent multipole analysis and obtained values for Re(S1+/M1+)=-(6.84+/-0.15)% and Re(E1+/M1+)=-(2.91+/-0.19)% that are distinctly different from those from the traditional Legendre analysis based upon M1+ dominance and sp truncation.Comment: 5 pages, 2 figures, for PR

Variants of EVER1 and EVER2 (TMC6 and TMC8) and human papillomavirus status in patients with mucosal squamous cell carcinoma of the head and neck

Published online: 20 April 2016Purpose: There is a growing association of human papillomavirus (HPV) with some cases of mucosal squamous cell carcinoma of the head and neck (HNSCC), particularly of the oropharynx. Persistent oral HPV infection is believed to increase the likelihood of malignancy, and it is possible that host genetic factors can determine susceptibility to persistent HPV infection. Polymorphisms in the two EV genes (EVER1 and EVER2, also known as transmembrane channel protein (TMC) 6 and 8) have been identified as strong candidate genes, since a small number of critical mutations in these genes have been shown to cause profound and florid skin HPV infections, and some of them have been linked to susceptibility to cervical cancer. Methods: We sought to determine whether there was a difference in the frequency of single nucleotide polymorphisms (SNPs) in EVER1 (rs2613516, rs12449858) and EVER2 (rs7205422, rs12452890) between HNSCC patients with HPV-positive and HPV-negative tumors, and healthy controls. We used logistic regression to analyze SNPs in 219 patients with histologically confirmed primary SCC of the oropharynx, oral cavity, hypopharynx, or larynx, and 321 healthy controls. Results: We did not find any associations with the EVER1/ EVER2 SNPs and HPV status or being a HNSCC case or a control. Conclusions: The present data do not provide evidence for a role of genetic variations in EVER1 or EVER2 for HPV status of mucosal HNSCC or between HNSCC patients and controls.Annika Antonsson, Matthew H. Law, Rachel E. Neale, William B. Coman, David I. Pryor, Study of Digestive Health (SDH), Sandro V. Porceddu, David C. Whiteman (The SDH Study Group: Chief investigators Paul Drew, Glyn Jamieson (University of Adelaide) ; Clinical collaborator William Tam (Royal Adelaide Hospital)

Recoil polarization measurements for neutral pion electroproduction at Q2=1(GeV/c)2 near the Δ resonance

We measured angular distributions of differential cross section, beam analyzing power, and recoil polarization for neutral pion electroproduction at Q2=1.0(GeV/c)2 in 10 bins of 1.17≤W≤1.35 GeV across the Δ resonance. A total of 16 independent response functions were extracted, of which 12 were observed for the first time. Comparisons with recent model calculations show that response functions governed by real parts of interference products are determined relatively well near the physical mass, W=MΔ1.232 GeV, but the variation among models is large for response functions governed by imaginary parts, and for both types of response functions, the variation increases rapidly with W>MΔ. We performed a multipole analysis that adjusts suitable subsets of π≤2 amplitudes with higher partial waves constrained by baseline models. This analysis provides both real and imaginary parts. The fitted multipole amplitudes are nearly model independent-there is very little sensitivity to the choice of baseline model or truncation scheme. By contrast, truncation errors in the traditional Legendre analysis of N→Δ quadrupole ratios are not negligible. Parabolic fits to the W dependence around MΔ for the multiple analysis gives values for Re(S1+/M1+)=(-6.61±0. 18)% and Re(E1+/M1+)=(-2.87±0.19)% for the pπ0 channel at W=1.232 GeV and Q2=1.0(GeV/c)2 that are distinctly larger than those from the Legendre analysis of the same data. Similarly, the multipole analysis gives Re(S0+/M1+)=(+7.1±0.8)% at W=1.232 GeV, consistent with recent models, while the traditional Legendre analysis gives the opposite sign because its truncation errors are quite severe. © 2007 The American Physical Society

High-resolution hypernuclear spectroscopy at Jefferson Lab, Hall A

International audienceThe experiment E94-107 in Hall A at Jefferson Lab started a systematic study of high-resolution hypernuclear spectroscopy in the 0p-shell region of nuclei such as the hypernuclei produced in electroproduction on Be9,C12, and O16 targets. In order to increase counting rates and provide unambiguous kaon identification, two superconducting septum magnets and a ring-imaging Cherenkov detector were added to the Hall A standard equipment. The high-quality beam, the good spectrometers, and the new experimental devices allowed us to obtain very good results. For the first time, measurable strength with sub-MeV energy resolution was observed for the core-excited states of BΛ12. A high-quality NΛ16 hypernuclear spectrum was likewise obtained. A first measurement of the Λ binding energy for NΛ16, calibrated against the elementary reaction on hydrogen, was obtained with high precision, 13.76±0.16 MeV. Similarly, the first LiΛ9 hypernuclear spectrum shows general agreement with theory (distorted-wave impulse approximation with the SLA and BS3 electroproduction models and shell-model wave functions). Some disagreement exists with respect to the relative strength of the states making up the first multiplet. A Λ separation energy of 8.36 MeV was obtained, in agreement with previous results. It has been shown that the electroproduction of hypernuclei can provide information complementary to that obtained with hadronic probes and the γ-ray spectroscopy technique