The Villanova University School of Law (A History)

A History of the founding and major events and milestones of the Villanova University School of Law, published in 1991.https://digitalcommons.law.villanova.edu/books/1000/thumbnail.jp

A strategy for the characterization of minute chromosome rearrangements using multiple color fluorescence in situ hybridization with chromosome-specific DNA libraries and YAC clones

The identification of marker chromosomes in clinical and tumor cytogenetics by chromosome banding analysis can create problems. In this study, we present a strategy to define minute chromosomal rearrangements by multicolor fluorescence in situ hybridization (FISH) with whole chromosome painting probes derived from chromosome-specific DNA libraries and Alu-polymerase chain reaction (PCR) products of various region-specific yeast artificial chromosome (YAC) clones. To demonstrate the usefulness of this strategy for the characterization of chromosome rearrangements unidentifiable by banding techniques, an 8p+ marker chromosome with two extra bands present in the karyotype of a child with multiple anomalies, malformations, and severe mental retardation was investigated. A series of seven-color FISH experiments with sets of fluorochrome-labeled DNA library probes from flow-sorted chromosomes demonstrated that the additional segment on 8p+ was derived from chromosome 6. For a more detailed characterization of the marker chromosome, three-color FISH experiments with library probes specific to chromosomes 6 and 8 were performed in combination with newly established telomeric and subtelomeric YAC clones from 6q25, 6p23, and 8p23. These experiments demonstrated a trisomy 6pter6p22 and a monosomy 8pter8p23 in the patient. The present limitations for a broad application of this strategy and its possible improvements are discusse

Multiple constraints cause positive and negative feedbacks limiting grassland soil CO2efflux under CO2enrichment

Terrestrial ecosystems are increasingly enriched with resources such as atmospheric CO2that limit ecosystem processes. The consequences for ecosystem carbon cycling depend on the feedbacks from other limiting resources and plant community change, which remain poorly understood for soil CO2efflux, JCO2, a primary carbon flux from the biosphere to the atmosphere. We applied a unique CO2enrichment gradient (250 to 500 μL L-1) for eight years to grassland plant communities on soils from different landscape positions. We identified the trajectory of JCO2responses and feedbacks from other resources, plant diversity [effective species richness, exp(H)], and community change (plant species turnover). We found linear increases in JCO2on an alluvial sandy loam and a lowland clay soil, and an asymptotic increase on an upland silty clay soil. Structural equation modeling identified CO2as the dominant limitation on JCO2on the clay soil. In contrast with theory predicting limitation from a single limiting factor, the linear JCO2response on the sandy loam was reinforced by positive feedbacks from aboveground net primary productivity and exp(H), while the asymptotic JCO2response on the silty clay arose from a net negative feedback among exp(H), species turnover, and soil water potential. These findings support a multiple resource limitation view of the effects of global change drivers on grassland ecosystem carbon cycling and highlight a crucial role for positive or negative feedbacks between limiting resources and plant community structure. Incorporating these feedbacks will improve models of terrestrial carbon sequestration and ecosystem services

Multiple constraints cause positive and negative feedbacks limiting grassland soil CO2efflux under CO2enrichment

Terrestrial ecosystems are increasingly enriched with resources such as atmospheric CO2that limit ecosystem processes. The consequences for ecosystem carbon cycling depend on the feedbacks from other limiting resources and plant community change, which remain poorly understood for soil CO2efflux, JCO2, a primary carbon flux from the biosphere to the atmosphere. We applied a unique CO2enrichment gradient (250 to 500 μL L-1) for eight years to grassland plant communities on soils from different landscape positions. We identified the trajectory of JCO2responses and feedbacks from other resources, plant diversity [effective species richness, exp(H)], and community change (plant species turnover). We found linear increases in JCO2on an alluvial sandy loam and a lowland clay soil, and an asymptotic increase on an upland silty clay soil. Structural equation modeling identified CO2as the dominant limitation on JCO2on the clay soil. In contrast with theory predicting limitation from a single limiting factor, the linear JCO2response on the sandy loam was reinforced by positive feedbacks from aboveground net primary productivity and exp(H), while the asymptotic JCO2response on the silty clay arose from a net negative feedback among exp(H), species turnover, and soil water potential. These findings support a multiple resource limitation view of the effects of global change drivers on grassland ecosystem carbon cycling and highlight a crucial role for positive or negative feedbacks between limiting resources and plant community structure. Incorporating these feedbacks will improve models of terrestrial carbon sequestration and ecosystem services

CO2 enrichment and soil type additively regulate grassland productivity

The development of a predictive understanding of how atmospheric CO2 enrichment is affecting the primary productivity of the terrestrial biosphere is among the most pressing of ecological challenges. The terrestrial biosphere absorbs c. 25% of anthropogenic carbon (C) emissions (Le Quere et al., 2018). Uncertainty in CO2 effects on ecosystem C uptake is a major constraint in the prediction of C cycling and the provisioning of productivity- related ecosystem services. Grasslands cover c. 25% of the terrestrial area and are an important contributor to the global C balance (Sala et al., 1996). CO2 enrichment stimulates the aboveground net primary productivity (ANPP) of most water-limited grasslands by increasing plant water use efficiency (WUE; productivity per unit of transpiration; Morgan et al., 2004; Nowak et al., 2004; Fatichi et al., 2016), but grassland ANPP, as other ecosystem functions, is determined by drivers in addition to water availability which act simultaneously and often interactively with CO2 (Polley et al., 2011). CO2 enrichment usually shows greater stimulation of plant productivity when nitrogen (N) availability is relatively high (Owensby et al., 1994; Reich & Hobbie, 2013; Mueller et al., 2016), for example. Other drivers include precipitation timing (Hovenden et al., 2014), disturbance regimes (Newton et al., 2014), plant species composition (Langley & Megonigal, 2010; Fay et al., 2012; Polley et al., 2012) and soil properties (Epstein et al., 1997, 1998), including soil texture, which influences water availability to plants (Tor-Ngern et al., 2017)

CO2 enrichment and soil type additively regulate grassland productivity

The development of a predictive understanding of how atmospheric CO2 enrichment is affecting the primary productivity of the terrestrial biosphere is among the most pressing of ecological challenges. The terrestrial biosphere absorbs c. 25% of anthropogenic carbon (C) emissions (Le Quere et al., 2018). Uncertainty in CO2 effects on ecosystem C uptake is a major constraint in the prediction of C cycling and the provisioning of productivity- related ecosystem services. Grasslands cover c. 25% of the terrestrial area and are an important contributor to the global C balance (Sala et al., 1996). CO2 enrichment stimulates the aboveground net primary productivity (ANPP) of most water-limited grasslands by increasing plant water use efficiency (WUE; productivity per unit of transpiration; Morgan et al., 2004; Nowak et al., 2004; Fatichi et al., 2016), but grassland ANPP, as other ecosystem functions, is determined by drivers in addition to water availability which act simultaneously and often interactively with CO2 (Polley et al., 2011). CO2 enrichment usually shows greater stimulation of plant productivity when nitrogen (N) availability is relatively high (Owensby et al., 1994; Reich & Hobbie, 2013; Mueller et al., 2016), for example. Other drivers include precipitation timing (Hovenden et al., 2014), disturbance regimes (Newton et al., 2014), plant species composition (Langley & Megonigal, 2010; Fay et al., 2012; Polley et al., 2012) and soil properties (Epstein et al., 1997, 1998), including soil texture, which influences water availability to plants (Tor-Ngern et al., 2017)

Alpha and lambda interferon together mediate suppression of CD4 T cells induced by respiratory syncytial virus

The mechanism by which respiratory syncytial virus (RSV) suppresses T-cell proliferation to itself and other antigens is poorly understood. We used monocyte-derived dendritic cells (MDDC) and CD4 T cells and measured [(3)H]thymidine incorporation to determine the factors responsible for RSV-induced T-cell suppression. These two cell types were sufficient for RSV-induced suppression of T-cell proliferation in response to cytomegalovirus or Staphylococcus enterotoxin B. Suppressive activity was transferable with supernatants from RSV-infected MDDC and was not due to transfer of live virus or RSV F (fusion) protein. Supernatants from RSV-infected MDDC, but not MDDC exposed to UV-killed RSV or mock conditions, contained alpha interferon (IFN-alpha; median, 43 pg/ml) and IFN-lambda (approximately 1 to 20 ng/ml). Neutralization of IFN-alpha with monoclonal antibody (MAb) against one of its receptor chains, IFNAR2, or of IFN-lambda with MAb against either of its receptor chains, IFN-lambdaR1 (interleukin 28R [IL-28R]) or IL-10R2, had a modest effect. In contrast, blocking the two receptors together markedly reduced or completely blocked the RSV-induced suppression of CD4 T-cell proliferation. Defining the mechanism of RSV-induced suppression may guide vaccine design and provide insight into previously uncharacterized human T-cell responses and activities of interferons

Understanding and Enhancing Soil Biological Health: The Solution for Reversing Soil Degradation

Our objective is to provide an optimistic strategy for reversing soil degradation by increasing public and private research efforts to understand the role of soil biology, particularly microbiology, on the health of our world’s soils. We begin by defining soil quality/soil health (which we consider to be interchangeable terms), characterizing healthy soil resources, and relating the significance of soil health to agroecosystems and their functions. We examine how soil biology influences soil health and how biological properties and processes contribute to sustainability of agriculture and ecosystem services. We continue by examining what can be done to manipulate soil biology to: (i) increase nutrient availability for production of high yielding, high quality crops; (ii) protect crops from pests, pathogens, weeds; and (iii) manage other factors limiting production, provision of ecosystem services, and resilience to stresses like droughts. Next we look to the future by asking what needs to be known about soil biology that is not currently recognized or fully understood and how these needs could be addressed using emerging research tools. We conclude, based on our perceptions of how new knowledge regarding soil biology will help make agriculture more sustainable and productive, by recommending research emphases that should receive first priority through enhanced public and private research in order to reverse the trajectory toward global soil degradation

Long-term management effects on soil productivity and crop yield in semi-arid regions of Eastern Oregon

Long-term experiments were started at Pendleton and Moro, Oregon in the 1930's to evaluate the effects of tillage, fertilizer, and residue management on crop productivity in non-irrigated semi-arid regions. Coupled with multi-year varietal improvement, rotation, and green manure studies, they define those practices which sustain soil productivity and improve crop quality without degrading the environment. Because summer moisture is too low to support warm-season crops, this region of the Pacific Northwest is uniquely adapted to winter annuals and cool-season grasses. Winter cereal grains presently yield from 25 to 45% more than spring cereals. Winter wheat yield has risen steadily from 45 bushels/acre in the 1930's to 83 bushels/acre in 1980's. The increase results from both varietal improvement and the application of adequate nitrogen (N) to meet crop need. The yield advantage of fallowing over annual cropping is significantly less today than it was 50 years ago because drought stress has less impact on semidwarf winter wheats than on older, taller varieties. Soil organic matter continues to decline with time in a wheat/fallow rotation, even though soil erosion is minimal. Soil N availability has correspondingly declined, accentuating the need for greater amounts of N to achieve optimum yield. Residue management practices have a significant impact on organic matter level in soil. Generous manure application is capable of preventing organic matter decline. Burning of wheat stubble accentuates organic matter loss while N fertilization or pea vine addition reduces the decline. Soil organic matter deterioration appears to be substantially less in annual cropping than in a cereal/fallow rotation. Biological activity is about 50% lower with fallow than with annual cropping. Stubble mulching, which leaves residue on the soil surface to deter erosion, favors organic matter retention. Soil under 50 years of stubble-mulch now has about one-third more organic matter in the top 3 inches than soil that was plowed. Legume green manures are an effective source of N, supplying from 40 to 80 lbs N/acre to the following crop. But green manures remove soil moisture, and cereals following green manure have lower yield and net return than cereals following fallow where annual precipitation is less than 17 inches. The requirement for increasing amounts of N fertilizer to attain optimum yield in the 1980's is accompanied by increasing difficulty in determining the correct amount to apply. Variation in growing-season precipitation has a strong impact on yield and utilization of applied N. This leads to the potential for over application of N and possible N loss to surface or ground water. Nitrogen fertilizers, but not tillage, have affected the physical condition of soil, probably because greater root densities are associated with higher N application rates. The development of alternate crops to cereals has not been very productive because of low yield performance. The oilseed crops, winter rape and safflower have marginally lower return than cereals. Legumes, grasses, grass seed, coarse feed grains, and vegetables all produce substantially lower returns than cereals, primarily because they are warm-season crops with a high summertime water requirement.Published June 1994. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalo

Genetic risk factors for cerebrovascular disease in children with sickle cell disease: design of a case-control association study and genomewide screen

BACKGROUND: The phenotypic heterogeneity of sickle cell disease is likely the result of multiple genetic factors and their interaction with the sickle mutation. High transcranial doppler (TCD) velocities define a subgroup of children with sickle cell disease who are at increased risk for developing ischemic stroke. The genetic factors leading to the development of a high TCD velocity (i.e. cerebrovascular disease) and ultimately to stroke are not well characterized. METHODS: We have designed a case-control association study to elucidate the role of genetic polymorphisms as risk factors for cerebrovascular disease as measured by a high TCD velocity in children with sickle cell disease. The study will consist of two parts: a candidate gene study and a genomewide screen and will be performed in 230 cases and 400 controls. Cases will include 130 patients (TCD ≥ 200 cm/s) randomized in the Stroke Prevention Trial in Sickle Cell Anemia (STOP) study as well as 100 other patients found to have high TCD in STOP II screening. Four hundred sickle cell disease patients with a normal TCD velocity (TCD < 170 cm/s) will be controls. The candidate gene study will involve the analysis of 28 genetic polymorphisms in 20 candidate genes. The polymorphisms include mutations in coagulation factor genes (Factor V, Prothrombin, Fibrinogen, Factor VII, Factor XIII, PAI-1), platelet activation/function (GpIIb/IIIa, GpIb IX-V, GpIa/IIa), vascular reactivity (ACE), endothelial cell function (MTHFR, thrombomodulin, VCAM-1, E-Selectin, L-Selectin, P-Selectin, ICAM-1), inflammation (TNFα), lipid metabolism (Apo A1, Apo E), and cell adhesion (VCAM-1, E-Selectin, L-Selectin, P-Selectin, ICAM-1). We will perform a genomewide screen of validated single nucleotide polymorphisms (SNPs) in pooled DNA samples from 230 cases and 400 controls to study the possible association of additional polymorphisms with the high-risk phenotype. High-throughput SNP genotyping will be performed through MALDI-TOF technology using Sequenom's MassARRAY™ system. DISCUSSION: It is expected that this study will yield important information on genetic risk factors for the cerebrovascular disease phenotype in sickle cell disease by clarifying the role of candidate genes in the development of high TCD. The genomewide screen for a large number of SNPs may uncover the association of novel polymorphisms with cerebrovascular disease and stroke in sickle cell disease