Nitrate reductase activity in the diatom Biddulphia longicruris: characterization and daily oscillation

Nitrate reductase (NR) activity was studied in the marine diatom Biddulphia longicruris. During 24 hours of sampling, NR activity was found during day time and in the transition day-night. Nitrite anions, the product of nitrate reduction, was released by the cells at the times NR was active, and accumulated in the culture medium. Whenever the cultures of B. longicmris were submitted to nitrogen deprivation, NR activity could not be detected. In vitro determination of KM values for NR using nitrate or NADH were respectively 50//M and 80 /*M. Temperature and pH dependence of NR activity were also determined for this organism.A atividade de nitrato redutase (NR) foi estudada na diatomácea marinha Biddulphia longicruris. A NR é a enzima responsável pelo processo de assimilação de nitrato. O nitrato é reduzido no interior da célula a nitrito pela ação da NR. Esta enzima é normalmente oligomérica e utiliza o NADH como substrato doador de elétrons. Em alguns organismos também são encontradas NRs capazes de utilizarem o NADPH como doador eletrônico para a redução do nitrato a nitrito. Para a diatomácea B. longicmris foram apresentadas evidências de que a sua NR é específica para NADH e que a redução de nitrato em presença de NADPH não acontece. Determinações in vitro dos valores das constantes de Michaelis-Menten (KM) usando nitrato e NADH como substratos, são respectivamente 50µ e 80µM. A temperatura ótima de reação enzimática e a sua dependência ao pH também foram estudadas. Cultivos de B. longicmris foram acompanhados por períodos de 24 horas e foi mostrado que a atividade de NR é encontrada em maiores níveis durante os períodos de transição de luz/escuro. Os anions nitrito, produtos da redução de nitrato, são eliminados pelas células nos períodos de maior atividade de NR e se acumulam no meio de cultura. Células submetidas à ausência de nitrato apresentam uma repressão da expressão de NR, sendo ativadas quando pulsos de nitrato são fornecidos a estas culturas

HTself2: Combining p-values to Improve Classification of Differential Gene Expression in HTself

HTself is a web-based bioinformatics tool designed to deal with the classification of differential gene expression for low replication microarray studies. It is based on a statistical test that uses self-self experiments to derive intensity-dependent cutoffs. The method was previously described in Vêncio et al, (DNA Res. 12: 211- e 214, 2005). In this work we consider an extension of HTself by calculating p-values instead of using a fixed credibility level α. As before, the statistic used to compute single spots p-values is obtained from the gaussian Kernel Density Estimator method applied to self-self data. Different spots corresponding to the same biological gene (replicas) give rise to a set of independent p-values which can be combined by well known statistical methods. The combined p-value can be used to decide whether a gene can be considered differentially expressed or not. HTself2 is a new version of HTself that uses the idea of p-values combination. It was implemented as a user-friendly desktop application to help laboratories without a bioinformatics infrastructure

Comparison of diode array and electrochemical detection in the C30 reverse phase HPLC analysis of algae carotenoids

Qualitative and quantitative determination of carotenoids pigments can provide valuable information about the organisms in which this important class of compounds is found. In the HPLC analysis of pigments, diode array (DAD), electrochemical (ED) and other kinds of detector may be used. The aim of this work is to develop an HPLC method using a C30 column to identify and quantify sixteen different pigments from algae. A further aim is to compare precision and accuracy obtained by DAD and ED. ED is normally more sensible than DAD. On the other hand, the highest precision and accuracy was obtained with DAD. In conclusion, the method was efficient for quantitative and qualitative analyses of pigments from cyanobacteria and different microalgae classes. Their pigment patterns for several organisms are also discussed.A determinação qualitativa e quantitativa de carotenóides pode fornecer diferentes e importantes informações sobre os organismos que os contêm. Na análise de pigmentos por HPLC diversos detectores podem ser utilizados, como diode array (DAD) e eletroquímico (ED). O presente trabalho tem como objetivo desenvolver um método por HPLC utilizando uma coluna C30 para a identificação e quantificação de dezesseis pigmentos em diferentes classes de algas, além de comparar as respostas obtidas nos detectores DAD e ED por meio da análise dos resultados de precisão e exatidão. Apesar do ED ser geralmente um detector mais sensível que o DAD, os resultados de precisão e exatidão foram mais satisfatórios para o DAD. O método desenvolvido foi eficiente para a análise quantitativa dos pigmentos de cianobactérias e diferentes classes de algas, sendo que o padrão cromatográfico encontrado em cada classe foi discutido.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Milênio-Redoxom

Characteristic product ions of acetylene carotenoids by electrospray and nanospray ionization tandem mass spectrometry

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Sesquiterpenes from the essential oil of Laurencia dendroidea (Ceramiales, Rhodophyta): isolation, biological activities and distribution among seaweeds

Two known sesquiterpenes (1R*,2S*,3R*,5S*,8S*,9R*)-2,3,5,9-tetramethyltricyclo[6.3.0.0(1,5)]undecan-2-ol and (1S*,2S*,3S*,5S*,8S*,9S*)-2,3,5,9-tetramethyltricyclo-[6.3.0.0(1,5)]undecan-2-ol were isolated for the first time from the essential oil of the red seaweed Laurencia dendroidea collected in the Brazilian coast. These compounds were not active against eight bacteria strains and the yeast Candida albicans, but showed some antioxidant activity. Both compounds were also found in other seaweed species showing that they are not exclusive taxonomic markers to the genus Laurencia.Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Ministério da SaúdeMinistério de Ciência e TecnologiaCNPq - INCT-Redoxom

Comparison of extraction and transesterification methods on the determination of the fatty acid contents of three Brazilian seaweed species

Seaweeds are photosynthetic organisms important to their ecosystem and constitute a source of compounds with several different applications in the pharmaceutical, cosmetic and biotechnology industries, such as triacylglycerols, which can be converted to fatty acid methyl esters that make up biodiesel, an alternative source of fuel applied in economic important areas. This study evaluates the fatty acid profiles and concentrations of three Brazilian seaweed species, Hypnea musciformis (Wulfen) J.V. Lamouroux (Rhodophya), Sargassum cymosum C. Agardh (Heterokontophyta), and Ulva lactuca L. (Chlorophyta), comparing three extraction methods (Bligh & Dyer - B&D; AOAC Official Methods - AOM; and extraction with methanol and ultrasound - EMU) and two transesterification methods (7% BF3 in methanol - BF3; and 5% HCl in methanol - HCl). The fatty acid contents of the three species of seaweeds were significantly different when extracted and transesterified by the different methods. Moreover, the best method for one species was not the same for the other species. The best extraction and transesterification methods for H. musciformis, S. cymosum and U. lactuca were, respectively, AOM-HCl, B&D-BF3 and B&D-BF3/B&D-HCl. These results point to a matrix effect and the method used for the analysis of the fatty acid content of different organisms should be selected carefully

Characterization of volatile composition of Laurencia dendroidea by gas chromatography-mass spectrometry

In this study we report the characterization of the volatile compounds of Laurencia dendroidea. Solvent extracts (dichloromethane and methanol), hydrodistillation extracts and headspace solid-phase microextraction samples were obtained and analyzed by GC-MS. Forty-six volatile components were identified in L. dendroidea, among them hydrocarbons, alcohols, phenols, aldehydes, ketones, acids, esters and terpenes