86 research outputs found
Ion-selective electrodes in environmental analysis
An overview is given dealing with the application of ion-selective electrodes (ISEs) in environmental analysis. ISEs are placed into the context of the trend of development of sensors for extensive and frequent monitoring. Discussed are the issues such as sensing platforms and their mass-production, improvement of precision, diagnostic of sensor functionality, and development of reference electrodes. Several examples of real-life application of ISEs in environmental analysis are given. The main emphasis of this article is directed towards summarizing recent results of the authors during the past several years
Existential Loneliness and end-of-life care: A Systematic Review
Contains fulltext :
88662.pdf (publisher's version ) (Closed access)Patients with a life-threatening illness can be confronted with various types of loneliness, one of which is existential loneliness (EL). Since the experience of EL is extremely disruptive, the issue of EL is relevant for the practice of end-of-life care. Still, the literature on EL has generated little discussion and empirical substantiation and has never been systematically reviewed. In order to systematically review the literature, we (1) identified the existential loneliness literature; (2) established an organising framework for the review; (3) conducted a conceptual analysis of existential loneliness; and (4) discussed its relevance for end-of-life care. We found that the EL concept is profoundly unclear. Distinguishing between three dimensions of EL-as a condition, as an experience, and as a process of inner growth-leads to some conceptual clarification. Analysis of these dimensions on the basis of their respective key notions-everpresent, feeling, defence; death, awareness, difficult communication; and inner growth, giving meaning, authenticity-further clarifies the concept. Although none of the key notions are unambiguous, they may function as a starting point for the development of care strategies on EL at the end of life.1 april 201
Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas
This integrated, multiplatform PanCancer Atlas study co-mapped and identified distinguishing
molecular features of squamous cell carcinomas (SCCs) from five sites associated with smokin
Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context
Long noncoding RNAs (lncRNAs) are commonly dys-regulated in tumors, but only a handful are known toplay pathophysiological roles in cancer. We inferredlncRNAs that dysregulate cancer pathways, onco-genes, and tumor suppressors (cancer genes) bymodeling their effects on the activity of transcriptionfactors, RNA-binding proteins, and microRNAs in5,185 TCGA tumors and 1,019 ENCODE assays.Our predictions included hundreds of candidateonco- and tumor-suppressor lncRNAs (cancerlncRNAs) whose somatic alterations account for thedysregulation of dozens of cancer genes and path-ways in each of 14 tumor contexts. To demonstrateproof of concept, we showed that perturbations tar-geting OIP5-AS1 (an inferred tumor suppressor) andTUG1 and WT1-AS (inferred onco-lncRNAs) dysre-gulated cancer genes and altered proliferation ofbreast and gynecologic cancer cells. Our analysis in-dicates that, although most lncRNAs are dysregu-lated in a tumor-specific manner, some, includingOIP5-AS1, TUG1, NEAT1, MEG3, and TSIX, synergis-tically dysregulate cancer pathways in multiple tumorcontexts
Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas
Although theMYConcogene has been implicated incancer, a systematic assessment of alterations ofMYC, related transcription factors, and co-regulatoryproteins, forming the proximal MYC network (PMN),across human cancers is lacking. Using computa-tional approaches, we define genomic and proteo-mic features associated with MYC and the PMNacross the 33 cancers of The Cancer Genome Atlas.Pan-cancer, 28% of all samples had at least one ofthe MYC paralogs amplified. In contrast, the MYCantagonists MGA and MNT were the most frequentlymutated or deleted members, proposing a roleas tumor suppressors.MYCalterations were mutu-ally exclusive withPIK3CA,PTEN,APC,orBRAFalterations, suggesting that MYC is a distinct onco-genic driver. Expression analysis revealed MYC-associated pathways in tumor subtypes, such asimmune response and growth factor signaling; chro-matin, translation, and DNA replication/repair wereconserved pan-cancer. This analysis reveals insightsinto MYC biology and is a reference for biomarkersand therapeutics for cancers with alterations ofMYC or the PMN
Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images
Beyond sample curation and basic pathologic characterization, the digitized H&E-stained images
of TCGA samples remain underutilized. To highlight this resource, we present mappings of tumorinfiltrating lymphocytes (TILs) based on H&E images from 13 TCGA tumor types. These TIL
maps are derived through computational staining using a convolutional neural network trained to
classify patches of images. Affinity propagation revealed local spatial structure in TIL patterns and
correlation with overall survival. TIL map structural patterns were grouped using standard
histopathological parameters. These patterns are enriched in particular T cell subpopulations
derived from molecular measures. TIL densities and spatial structure were differentially enriched
among tumor types, immune subtypes, and tumor molecular subtypes, implying that spatial
infiltrate state could reflect particular tumor cell aberration states. Obtaining spatial lymphocytic
patterns linked to the rich genomic characterization of TCGA samples demonstrates one use for
the TCGA image archives with insights into the tumor-immune microenvironment
Ocean Acidification at High Latitudes: Potential Effects on Functioning of the Antarctic Bivalve Laternula elliptica
Ocean acidification is a well recognised threat to marine ecosystems. High
latitude regions are predicted to be particularly affected due to cold waters
and naturally low carbonate saturation levels. This is of concern for organisms
utilising calcium carbonate (CaCO3) to generate shells or skeletons.
Studies of potential effects of future levels of pCO2 on high latitude
calcifiers are at present limited, and there is little understanding of their
potential to acclimate to these changes. We describe a laboratory experiment
to compare physiological and metabolic responses of a key benthic bivalve, Laternula
elliptica, at pCO2 levels of their natural environment
(430 µatm, pH 7.99; based on field measurements) with those predicted
for 2100 (735 µatm, pH 7.78) and glacial levels (187 µatm, pH
8.32). Adult L. elliptica basal metabolism (oxygen consumption
rates) and heat shock protein HSP70 gene expression levels
increased in response both to lowering and elevation of pH. Expression of
chitin synthase (CHS), a key enzyme involved in synthesis
of bivalve shells, was significantly up-regulated in individuals at pH 7.78,
indicating L. elliptica were working harder to calcify in
seawater undersaturated in aragonite (ΩAr = 0.71),
the CaCO3 polymorph of which their shells are comprised. The different
response variables were influenced by pH in differing ways, highlighting the
importance of assessing a variety of factors to determine the likely impact
of pH change. In combination, the results indicate a negative effect of ocean
acidification on whole-organism functioning of L. elliptica
over relatively short terms (weeks-months) that may be energetically difficult
to maintain over longer time periods. Importantly, however, the observed changes
in L. elliptica CHS gene expression provides evidence for
biological control over the shell formation process, which may enable some
degree of adaptation or acclimation to future ocean acidification scenarios
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