geojs: Version 0.10.1

Bug fixes Fixed a bug preventing deletion of stroked polygons (#601

dandi/dandi-archive: v0.3.60

<h4> Bug Fix</h4> <ul> <li>Add UPLOADED state to Zarr models <a href="https://github.com/dandi/dandi-archive/pull/1698">#1698</a> (<a href="https://github.com/AlmightyYakob">@AlmightyYakob</a> <a href="https://github.com/danlamanna">@danlamanna</a>)</li> <li>Require Python 3.11 <a href="https://github.com/dandi/dandi-archive/pull/1736">#1736</a> (<a href="https://github.com/brianhelba">@brianhelba</a>)</li> <li>Add a note to registration page that no account is necessary to access public data <a href="https://github.com/dandi/dandi-archive/pull/1696">#1696</a> (<a href="https://github.com/yarikoptic">@yarikoptic</a> <a href="https://github.com/satra">@satra</a>)</li> </ul> <h4> Tests</h4> <ul> <li>Revert "Skip broken dandi-cli tests" - fixed up in dandi-cli 0.57.0 <a href="https://github.com/dandi/dandi-archive/pull/1732">#1732</a> (<a href="https://github.com/yarikoptic">@yarikoptic</a>)</li> </ul> <h4>Authors: 5</h4> <ul> <li>Brian Helba (<a href="https://github.com/brianhelba">@brianhelba</a>)</li> <li>Dan LaManna (<a href="https://github.com/danlamanna">@danlamanna</a>)</li> <li>Jacob Nesbitt (<a href="https://github.com/AlmightyYakob">@AlmightyYakob</a>)</li> <li>Satrajit Ghosh (<a href="https://github.com/satra">@satra</a>)</li> <li>Yaroslav Halchenko (<a href="https://github.com/yarikoptic">@yarikoptic</a>)</li> </ul&gt

dandi/dandi-archive: v0.3.61

<h4> Bug Fix</h4> <ul> <li>Fix S308 Use of <code>mark_safe</code> may expose cross-site scripting vulnerabilities <a href="https://github.com/dandi/dandi-archive/pull/1742">#1742</a> (<a href="https://github.com/brianhelba">@brianhelba</a>)</li> <li>Clean up and improve the performance of manifest file creation <a href="https://github.com/dandi/dandi-archive/pull/1738">#1738</a> (<a href="https://github.com/brianhelba">@brianhelba</a>)</li> <li>Fix PTH118 <code>os.path.join()</code> should be replaced by <code>Path</code> with <code>/</code> operator <a href="https://github.com/dandi/dandi-archive/pull/1743">#1743</a> (<a href="https://github.com/brianhelba">@brianhelba</a>)</li> </ul> <h4>Authors: 1</h4> <ul> <li>Brian Helba (<a href="https://github.com/brianhelba">@brianhelba</a>)</li> </ul&gt

dandi/dandi-archive: v0.3.62

<h4> Bug Fix</h4> <ul> <li>[DATALAD RUNCMD] Replace youtube URL with the one with @dandiarchive <a href="https://github.com/dandi/dandi-archive/pull/1754">#1754</a> (<a href="https://github.com/yarikoptic">@yarikoptic</a>)</li> <li>Fix style issues found by Ruff <a href="https://github.com/dandi/dandi-archive/pull/1741">#1741</a> (<a href="https://github.com/brianhelba">@brianhelba</a>)</li> </ul> <h4>Authors: 2</h4> <ul> <li>Brian Helba (<a href="https://github.com/brianhelba">@brianhelba</a>)</li> <li>Yaroslav Halchenko (<a href="https://github.com/yarikoptic">@yarikoptic</a>)</li> </ul&gt

dandi/dandi-archive: v0.3.58

<h4> Bug Fix</h4> <ul> <li>Add sentry profiling <a href="https://github.com/dandi/dandi-archive/pull/1728">#1728</a> (<a href="https://github.com/danlamanna">@danlamanna</a>)</li> <li>Remove unnecessary atomic decorators from tasks <a href="https://github.com/dandi/dandi-archive/pull/1720">#1720</a> (<a href="https://github.com/mvandenburgh">@mvandenburgh</a>)</li> <li>Remove pinning on django-storages[boto3] <a href="https://github.com/dandi/dandi-archive/pull/1717">#1717</a> (<a href="https://github.com/mvandenburgh">@mvandenburgh</a>)</li> <li>Temporarily skip broken dandi-cli tests <a href="https://github.com/dandi/dandi-archive/pull/1718">#1718</a> (<a href="https://github.com/mvandenburgh">@mvandenburgh</a>)</li> <li>Remove unused <code>modified</code> field on <code>Upload</code> model <a href="https://github.com/dandi/dandi-archive/pull/1713">#1713</a> (<a href="https://github.com/mvandenburgh">@mvandenburgh</a>)</li> <li>File page index fix <a href="https://github.com/dandi/dandi-archive/pull/1704">#1704</a> (<a href="https://github.com/marySalvi">@marySalvi</a>)</li> <li>Fix <code>requests</code> type errors <a href="https://github.com/dandi/dandi-archive/pull/1714">#1714</a> (<a href="https://github.com/mvandenburgh">@mvandenburgh</a>)</li> </ul> <h4>Authors: 3</h4> <ul> <li>Dan LaManna (<a href="https://github.com/danlamanna">@danlamanna</a>)</li> <li>Mary Salvi (<a href="https://github.com/marySalvi">@marySalvi</a>)</li> <li>Mike VanDenburgh (<a href="https://github.com/mvandenburgh">@mvandenburgh</a>)</li> </ul&gt

dandi/dandi-archive: v0.3.59

<h4> Bug Fix</h4> <ul> <li>Optimize dandiset listing endpoint <a href="https://github.com/dandi/dandi-archive/pull/1730">#1730</a> (<a href="https://github.com/AlmightyYakob">@AlmightyYakob</a>)</li> <li>Update <code>django-composed-configuration</code> <a href="https://github.com/dandi/dandi-archive/pull/1731">#1731</a> (<a href="https://github.com/mvandenburgh">@mvandenburgh</a>)</li> </ul> <h4> Internal</h4> <ul> <li><a href="deps">gh-actions</a>: Bump actions/setup-node from 3 to 4 <a href="https://github.com/dandi/dandi-archive/pull/1726">#1726</a> (<a href="https://github.com/dependabot%5Bbot%5D">@dependabot[bot]</a>)</li> </ul> <h4>Authors: 3</h4> <ul> <li><a href="https://github.com/dependabot%5Bbot%5D">@dependabot[bot]</a></li> <li>Jacob Nesbitt (<a href="https://github.com/AlmightyYakob">@AlmightyYakob</a>)</li> <li>Mike VanDenburgh (<a href="https://github.com/mvandenburgh">@mvandenburgh</a>)</li> </ul&gt

A guide to the BRAIN Initiative Cell Census Network data ecosystem

Characterizing cellular diversity at different levels of biological organization and across data modalities is a prerequisite to understanding the function of cell types in the brain. Classification of neurons is also essential to manipulate cell types in controlled ways and to understand their variation and vulnerability in brain disorders. The BRAIN Initiative Cell Census Network (BICCN) is an integrated network of data-generating centers, data archives, and data standards developers, with the goal of systematic multimodal brain cell type profiling and characterization. Emphasis of the BICCN is on the whole mouse brain with demonstration of prototype feasibility for human and nonhuman primate (NHP) brains. Here, we provide a guide to the cellular and spatial approaches employed by the BICCN, and to accessing and using these data and extensive resources, including the BRAIN Cell Data Center (BCDC), which serves to manage and integrate data across the ecosystem. We illustrate the power of the BICCN data ecosystem through vignettes highlighting several BICCN analysis and visualization tools. Finally, we present emerging standards that have been developed or adopted toward Findable, Accessible, Interoperable, and Reusable (FAIR) neuroscience. The combined BICCN ecosystem provides a comprehensive resource for the exploration and analysis of cell types in the brain