Oceanography of Cowichan Bay: A background view for early marine survival of Chinook and Coho salmon

Early Marine Survival (EMS) of Chinook and Coho salmon in the Salish Sea has plummeted over the past decades, and both bottom-up and top-down mechanisms for decline have been proposed. As a background for an ecosystem-based assessment of EMS, a pilot study on the basic oceanography of a small sub-component of the system was launched in spring and early summer, 2013. A repeat sampling grid covering Cowichan Bay and immediately connected waters was established, and then sampled on weekly intervals for temperature, salinity, chlorophyll fluorescence, nutrients and zooplankton. Oceanographic studies were carried out concurrently with fisheries assessments. A longer section was carried out at monthly intervals, with the purpose of connecting Cowichan Bay to the Strait of Georgia. This talk will present findings from this study, identify key shortcoming and suggest an approach to expand the pilot study to the scale of the Salish Sea

Genetic versus Rearing-Environment Effects on Phenotype: Hatchery and Natural Rearing Effects on Hatchery- and Wild-Born Coho Salmon

With the current trends in climate and fisheries, well-designed mitigative strategies for conserving fish stocks may become increasingly necessary. The poor post-release survival of hatchery-reared Pacific salmon indicates that salmon enhancement programs require assessment. The objective of this study was to determine the relative roles that genotype and rearing environment play in the phenotypic expression of young salmon, including their survival, growth, physiology, swimming endurance, predator avoidance and migratory behaviour. Wild- and hatchery-born coho salmon adults (Oncorhynchus kisutch) returning to the Chehalis River in British Columbia, Canada, were crossed to create pure hatchery, pure wild, and hybrid offspring. A proportion of the progeny from each cross was reared in a traditional hatchery environment, whereas the remaining fry were reared naturally in a contained side channel. The resulting phenotypic differences between replicates, between rearing environments, and between cross types were compared. While there were few phenotypic differences noted between genetic groups reared in the same habitat, rearing environment played a significant role in smolt size, survival, swimming endurance, predator avoidance and migratory behaviour. The lack of any observed genetic differences between wild- and hatchery-born salmon may be due to the long-term mixing of these genotypes from hatchery introgression into wild populations, or conversely, due to strong selection in nature—capable of maintaining highly fit genotypes whether or not fish have experienced part of their life history under cultured conditions

Recent Salmon Declines: A Result of Lost Feeding Opportunities Due to Bad Timing?

As the timing of spring productivity blooms in near-shore areas advances due to warming trends in global climate, the selection pressures on out-migrating salmon smolts are shifting. Species and stocks that leave natal streams earlier may be favoured over later-migrating fish. The low post-release survival of hatchery fish during recent years may be in part due to static release times that do not take the timing of plankton blooms into account. This study examined the effects of release time on the migratory behaviour and survival of wild and hatchery-reared coho salmon (Oncorhynchus kisutch) using acoustic and coded-wire telemetry. Plankton monitoring and near-shore seining were also conducted to determine which habitat and food sources were favoured. Acoustic tags (n = 140) and coded-wire tags (n = 266,692) were implanted into coho salmon smolts at the Seymour and Quinsam Rivers, in British Columbia, Canada. Differences between wild and hatchery fish, and early and late releases were examined during the entire lifecycle. Physiological sampling was also carried out on 30 fish from each release group. The smolt-to-adult survival of coho salmon released during periods of high marine productivity was 1.5- to 3-fold greater than those released both before and after, and the fish's degree of smoltification affected their downstream migration time and duration of stay in the estuary. Therefore, hatchery managers should consider having smolts fully developed and ready for release during the peak of the near-shore plankton blooms. Monitoring chlorophyll a levels and water temperature early in the spring could provide a forecast of the timing of these blooms, giving hatcheries time to adjust their release schedule

An Investigation into the Poor Survival of an Endangered Coho Salmon Population

To investigate reasons for the decline of an endangered population of coho salmon (O. kisutch), 190 smolts were acoustically tagged during three consecutive years and their movements and survival were estimated using the Pacific Ocean Shelf Tracking project (POST) array. Median travel times of the Thompson River coho salmon smolts to the lower Fraser River sub-array were 16, 12 and 10 days during 2004, 2005 and 2006, respectively. Few smolts were recorded on marine arrays. Freshwater survival rates of the tagged smolts during their downstream migration were 0.0–5.6% (0.0–9.0% s.e.) in 2004, 7.0% (6.2% s.e.) in 2005, and 50.9% (18.6% s.e.) in 2006. Overall smolt-to-adult return rates exhibited a similar pattern, which suggests that low freshwater survival rates of out-migrating smolts may be a primary reason for the poor conservation status of this endangered coho salmon population

Migratory behaviour and survival of wild and hatchery coho salmon using acoustic telemetry

Climate is emerging as a primary determinant of marine survival and migratory behaviour for Pacific salmon. For example, a regime shift in the mid-1990s was correlated to a major change in the migratory behaviour of coho salmon (Oncorhynchus kisutch) in the Strait of Georgia, BC. The details of this new behaviour pattern remain relatively unknown. Furthermore, many coho stocks have been declining during the past three decades. Mitigative strategies –such as hatchery programs— have done little to reverse the trend, and little is known about how hatchery fish are affecting wild populations. The objective of this dissertation was to identify key mortality areas and provide the first look at the migratory behaviour of juvenile wild and hatchery coho in southwestern British Columbia using new telemetry technologies. As coho pre-smolts are relatively small compared with other salmonid species that are typically studied using acoustic telemetry, the identification of the appropriate sizes of fish and tags to use was critical. The first study tested the effects of surgically implanting the three smallest sizes of acoustic tags available on the growth, survival, performance and condition of coho pre-smolts. The first of three field studies to follow investigated the early migratory behaviour and survival of an endangered coho population. The second field study examined differences in physiology, survival and migratory behaviour between wild and hatchery-reared coho smolts. Finally, the third study analysed the altered marine migratory behaviour of juvenile coho in the Strait of Georgia. This dissertation provides the first evidence of high freshwater mortality rates in the endangered coho population, which has implications for the management and conservation of this and other at-risk stocks. I found differences in migratory behaviour and physiology between wild and hatchery-reared coho, suggesting that mitigative strategies need further evaluation. Finally, the timing of the anomalous coho migration out of the Strait of Georgia confirmed that population changes in the strait are a consequence of ecosystem-related impacts. These findings demonstrate how new technologies could be used to fill major information gaps and improve the management and conservation of Pacific salmon.Land and Food Systems, Faculty ofGraduat

An effective method for the recapture of escaped farmed salmon

ABSTRACT: The search for effective strategies to prevent and mitigate accidental releases of aquaculture fishes is on-going. To test a new recapture strategy and evaluate the individual dispersal behaviour of escaped farmed Atlantic salmon Salmo salar L. at the northern limit of its range, 39 adult salmon (mean ± SD fork length and weight: 85.5 ± 5.0 cm and 7.4 ± 1.4 kg, respectively) were implanted with depth-sensing acoustic tags and released in a north Norwegian fjord during the spring of 2007. The fish were released from 2 aquaculture sites in the Altafjord system and tracked using both mobile and fixed receivers. The coastal marine bag-net fishery, in combination with in-river angling, was tested as a potential recapture strategy. Immediately following the simulated escape event, the fish dove to near-bottom depths, subsequently returning to surface levels within the following days. The fish dispersed rapidly (9.5 ± 19.2 km d–1), traveling outward to coastal waters along the edges of the fjord. The bag-net fishers and anglers recaptured 79% of the escaped fish within 1 mo post-release, 90% of which were from bag nets. While most of the fish left the fjord, 7 tagged fish (18%) entered the Alta River estuary (3 of which later migrated up the Alta River), and 1 returned to the Altafjord the following year, presumably to spawn. The results showed that recapture efforts need to be immediate and widespread to mitigate farm-escape events. Coastal bag nets were effective at recapturing escaped farmed salmon, compared to previously tested methods, and would be especially useful in areas where gill-netting is not permitted

An effective method for the recapture of escaped farmed salmon

The search for effective strategies to prevent and mitigate accidental releases of aquaculture fishes is on-going. To test a new recapture strategy and evaluate the individual dispersal behaviour of escaped farmed Atlantic salmon Salmo salar L. at the northern limit of its range, 39 adult salmon (mean ± SD fork length and weight: 85.5 ± 5.0 cm and 7.4 ± 1.4 kg, respectively) were implanted with depth-sensing acoustic tags and released in a north Norwegian fjord during the spring of 2007. The fish were released from 2 aquaculture sites in the Altafjord system and tracked using both mobile and fixed receivers. The coastal marine bag-net fishery, in combination with inriver angling, was tested as a potential recapture strategy. Immediately following the simulated escape event, the fish dove to near-bottom depths, subsequently returning to surface levels within the following days. The fish dispersed rapidly (9.5 ± 19.2 km d–1), traveling outward to coastal waters along the edges of the fjord. The bag-net fishers and anglers recaptured 79% of the escaped fish within 1 mo post-release, 90% of which were from bag nets. While most of the fish left the fjord, 7 tagged fish (18%) entered the Alta River estuary (3 of which later migrated up the Alta River), and 1 returned to the Altafjord the following year, presumably to spawn. The results showed that recapture efforts need to be immediate and widespread to mitigate farm-escape events. Coastal bag nets were effective at recapturing escaped farmed salmon, compared to previously tested methods, and would be especially useful in areas where gill-netting is not permitted