NAD tagSeq reveals that NAD+-capped RNAs are mostly produced from a large number of protein-coding genes in Arabidopsis.

The 5' end of a eukaryotic mRNA transcript generally has a 7-methylguanosine (m7G) cap that protects mRNA from degradation and mediates almost all other aspects of gene expression. Some RNAs in Escherichia coli, yeast, and mammals were recently found to contain an NAD+ cap. Here, we report the development of the method NAD tagSeq for transcriptome-wide identification and quantification of NAD+-capped RNAs (NAD-RNAs). The method uses an enzymatic reaction and then a click chemistry reaction to label NAD-RNAs with a synthetic RNA tag. The tagged RNA molecules can be enriched and directly sequenced using the Oxford Nanopore sequencing technology. NAD tagSeq can allow more accurate identification and quantification of NAD-RNAs, as well as reveal the sequences of whole NAD-RNA transcripts using single-molecule RNA sequencing. Using NAD tagSeq, we found that NAD-RNAs in Arabidopsis were produced by at least several thousand genes, most of which are protein-coding genes, with the majority of these transcripts coming from <200 genes. For some Arabidopsis genes, over 5% of their transcripts were NAD capped. Gene ontology terms overrepresented in the 2,000 genes that produced the highest numbers of NAD-RNAs are related to photosynthesis, protein synthesis, and responses to cytokinin and stresses. The NAD-RNAs in Arabidopsis generally have the same overall sequence structures as the canonical m7G-capped mRNAs, although most of them appear to have a shorter 5' untranslated region (5' UTR). The identification and quantification of NAD-RNAs and revelation of their sequence features can provide essential steps toward understanding the functions of NAD-RNAs

Paxillin facilitates timely neurite initiation on soft-substrate environments by interacting with the endocytic machinery.

Neurite initiation is the first step in neuronal development and occurs spontaneously in soft tissue environments. Although the mechanisms regulating the morphology of migratory cells on rigid substrates in cell culture are widely known, how soft environments modulate neurite initiation remains elusive. Using hydrogel cultures, pharmacologic inhibition, and genetic approaches, we reveal that paxillin-linked endocytosis and adhesion are components of a bistable switch controlling neurite initiation in a substrate modulus-dependent manner. On soft substrates, most paxillin binds to endocytic factors and facilitates vesicle invagination, elevating neuritogenic Rac1 activity and expression of genes encoding the endocytic machinery. By contrast, on rigid substrates, cells develop extensive adhesions, increase RhoA activity and sequester paxillin from the endocytic machinery, thereby delaying neurite initiation. Our results highlight paxillin as a core molecule in substrate modulus-controlled morphogenesis and define a mechanism whereby neuronal cells respond to environments exhibiting varying mechanical properties

Biclique Attack of the Full ARIA-256

In this paper, combining the biclique cryptanalysis with the MITM attack, we present the first key recovery method for the full ARIA-256 faster than brute-force. The attack requires $2^{80}$ chosen plaintexts, and the time complexity is about $2^{255.2}$ full-round ARIA encryptions in the processing phase

4-[(2-Hy­droxy­naphthalen-1-yl)(morpholin-4-yl)meth­yl]benzonitrile

The title compound, C22H20N2O2, was synthesized via a multicomponent reaction using naphthalen-2-ol, morpholine and 4-formyl­benzonitrile. The dihedral angle between the naphthalene ring system and the benzene ring is 81.25 (10)°. The morpholine ring adopts a chair conformation. The mol­ecular conformation is stabilized by intra­molecular O—H⋯N and C—H⋯O hydrogen bonds. In the crystal, inter­molecular C—H⋯N hydrogen bonds link mol­ecules into helical chains running parallel to the c axis

Six lanthanide supramolecular frameworks based on mixed m-/p-hydroxybenzoic acid and 1,10-phenanthroline tectons: syntheses, crystal structures, and properties

To further explore the research of the coordination possibilities of lanthanide ions with m-/p-hydroxybenzoic acid isomers in the presence of chelating N-donor ligand 1,10-phenanthroline (phen), six lanthanide supramolecular frameworks based on 3- and 4-hydroxybenzoic acids, namely [Dy(m-L)(m-HL) (phen)]center dot H2O (1) (m-H2L = 3-hydroxybenzoic acid), [Ln(m-HL)(3)(phen)] (Ln = Gd for 2 and Tb for 3), [Ln(p-HL)(3)(phen)(H2O)] (Ln = Dy for 4, Gd for 5, and Tb for 6; p-H2L = 4-hydroxybenzoic acid), were synthesized and characterized. Structural analyses reveal that complex 1 has a two-dimensional (2-D) sheet structure while complexes 2 and 3 take the dinuclear structures in the 3-hydroxybenzoate derivatives. In the 4-hydroxybenzoate derivatives, complexes 4-6 are isostructural and incorporated by monomeric units. Finally, all the complexes exhibit three-dimensional (3-D) supramolecular frameworks (bcu net for I; bct nets for 2, and 4-6; hex net for 3) with the aid of abundant hydrogen bonding, pi center dot center dot center dot pi and C-H center dot center dot center dot pi interactions. The results reveal that the different positions of the-OH substituent and coordination modes of hydroxybenzoic acids adjust the final coordination networks. Moreover, the magnetic and luminescent properties of the complexes have also been investigated and discussed. (C) 2016 Elsevier Ltd. All rights reserved