Duplication, concerted evolution and purifying selection drive the evolution of mosquito vitellogenin genes

<p>Abstract</p> <p>Background</p> <p>Mosquito vitellogenin (<it>Vtg</it>) genes belong to a small multiple gene family that encodes the major yolk protein precursors required for egg production. Multiple <it>Vtg </it>genes have been cloned and characterized from several mosquito species, but their origin and molecular evolution are poorly understood.</p> <p>Results</p> <p>Here we used <it>in silico </it>and molecular cloning techniques to identify and characterize the evolution of the <it>Vtg </it>gene family from the genera <it>Culex</it>, <it>Aedes/Ochlerotatus</it>, and <it>Anopheles</it>. We identified the probable ancestral <it>Vtg </it>gene among different mosquito species by its conserved association with a novel gene approximately one kilobase upstream of the start codon. Phylogenetic analysis indicated that the <it>Vtg </it>gene family arose by duplication events, but that the pattern of duplication was different in each mosquito genera. Signatures of purifying selection were detected in <it>Culex</it>, <it>Aedes </it>and <it>Anopheles</it>. Gene conversion is a major driver of concerted evolution in <it>Culex</it>, while unequal crossover is likely the major driver of concerted evolution in <it>Anopheles</it>. In <it>Aedes</it>, smaller fragments have undergone gene conversion events.</p> <p>Conclusions</p> <p>The study shows concerted evolution and purifying selection shaped the evolution of mosquito <it>Vtg </it>genes following gene duplication. Additionally, similar evolutionary patterns were observed in the <it>Vtg </it>genes from other invertebrate and vertebrate organisms, suggesting that duplication, concerted evolution and purifying selection may be the major evolutionary forces driving <it>Vtg </it>gene evolution across highly divergent taxa.</p

Linking the Singularities of Cosmological Correlators

Much of the structure of cosmological correlators is controlled by their singularities, which in turn are fixed in terms of flat-space scattering amplitudes. An important challenge is to interpolate between the singular limits to determine the full correlators at arbitrary kinematics. This is particularly relevant because the singularities of correlators are not directly observable, but can only be accessed by analytic continuation. In this paper, we study rational correlators, including those of gauge fields, gravitons, and the inflaton, whose only singularities at tree level are poles and whose behavior away from these poles is strongly constrained by unitarity and locality. We describe how unitarity translates into a set of cutting rules that consistent correlators must satisfy, and explain how this can be used to bootstrap correlators given information about their singularities. We also derive recursion relations that allow the iterative construction of more complicated correlators from simpler building blocks. In flat space, all energy singularities are simple poles, so that the combination of unitarity constraints and recursion relations provides an efficient way to bootstrap the full correlators. In many cases, these flat-space correlators can then be transformed into their more complex de Sitter counterparts. As an example of this procedure, we derive the correlator associated to graviton Compton scattering in de Sitter space, though the methods are much more widely applicable.Comment: 69+29 pages, 6 figure

The weak localization for the alloy-type Anderson model on a cubic lattice

We consider alloy type random Schr\"odinger operators on a cubic lattice whose randomness is generated by the sign-indefinite single-site potential. We derive Anderson localization for this class of models in the Lifshitz tails regime, i.e. when the coupling parameter $\lambda$ is small, for the energies $E \le -C \lambda^2$.Comment: 45 pages, 2 figures. To appear in J. Stat. Phy

1/4-BPS M-theory bubbles with SO(3) x SO(4) symmetry

In this paper we generalize the work of Lin, Lunin and Maldacena on the classification of 1/2-BPS M-theory solutions to a specific class of 1/4-BPS configurations. We are interested in the solutions of 11 dimensional supergravity with $SO(3)\times SO(4)$ symmetry, and it is shown that such solutions are constructed over a one-parameter familiy of 4 dimensional almost Calabi-Yau spaces. Through analytic continuations we can obtain M-theory solutions having $AdS_2\times S^3$ or $AdS_3\times S^2$ factors. It is shown that our result is equivalent to the $AdS$ solutions which have been recently reported as the near-horizon geometry of M2 or M5-branes wrapped on 2 or 4-cycles in Calabi-Yau threefolds. We also discuss the hierarchy of M-theory bubbles with different number of supersymmetries.Comment: 22 pages, JHEP3.cls; v2. revised version. showed that our results agree with previous works hep-th/0605146 and hep-th/061219

Home gardening improves dietary diversity, a cluster-randomized controlled trial among Tanzanian women

Homestead food production (HFP) programmes improve the availability of vegetables by providing training in growing nutrient-dense crops. In rural Tanzania, most foods consumed are carbohydrate-rich staples with low micronutrient concentrations. This cluster-randomized controlled trial investigated whether women growing home gardens have higher dietary diversity, household food security or probability of consuming nutrient-rich food groups than women in a control group. We enrolled 1,006 women of reproductive age in 10 villages in Pwani Region in eastern Tanzania, split between intervention (INT) and control (CON) groups. INT received (a) agricultural training and inputs to promote HFP and dietary diversity and (b) nutrition and public health counselling from agricultural extension workers and community health workers. CON received standard services provided by agriculture and health workers. Results were analysed using linear regression models with propensity weighting adjusting for individual-level confounders and differential loss to follow up. Women in INT consumed 0.50 (95% CI [0.20, 0.80], p = 0.001) more food groups per day than women in CON. Women in INT were also 14 percentage points (95% CI [6, 22], p = 0.001) more likely to consume at least five food groups per day, and INT households were 6 percentage points (95% CI [-13, 0], p = 0.059) less likely to experience moderate-to-severe food insecurity compared with CON. This home gardening intervention had positive effects on diet quality and food security after 1 year. Future research should explore whether impact is sustained over time as well as the effects of home garden interventions on additional measures of nutritional status.</p

Solar Energetic Particles Produced by a Slow Coronal Mass Ejection at ∼0.25 au

We present an analysis of Parker Solar Probe (PSP) IS⊙IS observations of ~30–300 keV n⁻¹ ions on 2018 November 11 when PSP was about 0.25 au from the Sun. Five hours before the onset of a solar energetic particle (SEP) event, a coronal mass ejection (CME) was observed by STEREO-A/COR2, which crossed PSP about a day later. No shock was observed locally at PSP, but the CME may have driven a weak shock earlier. The SEP event was dispersive, with higher energy ions arriving before the lower energy ones. Timing suggests the particles originated at the CME when it was at ~7.4R_⊙. SEP intensities increased gradually from their onset over a few hours, reaching a peak, and then decreased gradually before the CME arrived at PSP. The event was weak, having a very soft energy spectrum (−4 to −5 spectral index). The earliest arriving particles were anisotropic, moving outward from the Sun, but later, the distribution was observed to be more isotropic. We present numerical solutions of the Parker transport equation for the transport of 30–300 keV n⁻¹ ions assuming a source comoving with the CME. Our model agrees well with the observations. The SEP event is consistent with ion acceleration at a weak shock driven briefly by the CME close to the Sun, which later dissipated before arriving at PSP, followed by the transport of ions in the interplanetary magnetic field

BMQ

BMQ: Boston Medical Quarterly was published from 1950-1966 by the Boston University School of Medicine and the Massachusetts Memorial Hospitals

Effect of the GaAsP shell on optical properties of self-catalyzed GaAs nanowires grown on silicon

We realize growth of self-catalyzed core-shell GaAs/GaAsP nanowires (NWs) on Si substrates using molecular-beam epitaxy. Transmission electron microscopy (TEM) of single GaAs/GaAsP NWs confirms their high crystal quality and shows domination of the zinc-blende phase. This is further confirmed in optics of single NWs, studied using cw and time-resolved photoluminescence (PL). A detailed comparison with uncapped GaAs NWs emphasizes the effect of the GaAsP capping in suppressing the non-radiative surface states: significant PL enhancement in the core-shell structures exceeding 2000 times at 10K is observed; in uncapped NWs PL is quenched at 60K whereas single core-shell GaAs/GaAsP NWs exhibit bright emission even at room temperature. From analysis of the PL temperature dependence in both types of NW we are able to determine the main carrier escape mechanisms leading to the PL quench

Detection of the arcuate fasciculus in congenital amusia depends on the tractography algorithm

The advent of diffusion magnetic resonance imaging (MRI) allows researchers to virtually dissect white matter fiber pathways in the brain in vivo. This, for example, allows us to characterize and quantify how fiber tracts differ across populations in health and disease, and change as a function of training. Based on diffusion MRI, prior literature reports the absence of the arcuate fasciculus (AF) in some control individuals and as well in those with congenital amusia. The complete absence of such a major anatomical tract is surprising given the subtle impairments that characterize amusia. Thus, we hypothesize that failure to detect the AF in this population may relate to the tracking algorithm used, and is not necessarily reflective of their phenotype. Diffusion data in control and amusic individuals were analyzed using three different tracking algorithms: deterministic and probabilistic, the latter either modeling two or one fiber populations. Across the three algorithms, we replicate prior findings of a left greater than right AF volume, but do not find group differences or an interaction. We detect the AF in all individuals using the probabilistic 2-fiber model, however, tracking failed in some control and amusic individuals when deterministic tractography was applied. These findings show that the ability to detect the AF in our sample is dependent on the type of tractography algorithm. This raises the question of whether failure to detect the AF in prior studies may be unrelated to the underlying anatomy or phenotype

Slow relaxation in the two dimensional electron plasma under the strong magnetic field

We study slow relaxation processes in the point vortex model for the two-dimensional pure electron plasma under the strong magnetic field. By numerical simulations, it is shown that, from an initial state, the system undergoes the fast relaxation to a quasi-stationary state, and then goes through the slow relaxation to reach a final state. From analysis of simulation data, we find (i) the time scale of the slow relaxation increases linearly to the number of electrons if it is measured by the unit of the bulk rotation time, (ii) during the slow relaxation process, each electron undergoes an superdiffusive motion, and (iii) the superdiffusive motion can be regarded as the Levy flight, whose step size distribution is of the power law. The time scale that each electron diffuses over the system size turns out to be much shorter than that of the slow relaxation, which suggests that the correlation among the superdiffusive trajectories is important in the slow relaxation process.Comment: 11pages, 19 figures. Submitted to J. Phys. Soc. Jp