Trans-Cis Isomerization And The Blue Phases

A new class of photoactive chiral liquid crystals based on a photoactive nematic host material and a photoinactive chiral dopant was utilized to investigate the behavior of the blues phases when trans-cis isomerization is induced. While the general behavior follows what has been observed in the cholesteric phase, the sensitivity of the blue phases to external parameters causes different behavior when these systems are exposed to UV radiation. The results for four different mixtures are reported and include (1) modulation of the blue phase selective reflection wavelength with low levels of UV and visible light, (2) conversion of one blue phase to another upon exposure to UV light, and (3) induction of blue phases due to UV irradiation when no blue phases are stable beforehand. It is also noted that the supercooled blue phase behaves differently from the other blue phases. All of these results can be understood qualitatively from the ratio of non-nematogenic cis isomers to nematogenic trans isomers and chiral molecules

Erneuerbare Energien und Mittelstand statt Kohle und Stahl? Die Städte des Donezker Gebiets bereiten den Kohleausstieg vor, trotz des Zögerns der Zentralregierung

Der anstehende Kohleausstiegspfad der Ukraine stellt die Zentralregierung und die Kohleregionen vor große wirtschafts- und sozialpolitische Herausforderungen. Gleichzeitig eröffnet er auch Entwicklungsperspektiven für die Ukraine, den kriegsgebeutelten Donbas und für die Energiewende in Europa. Das haben Akteure aus dem Donezker Gebiet erkannt. Sieben Kohlestädte, drei NGOs und die regionale Handelskammer gründeten bereits 2018 eine Plattform für einen gerechten Strukturwandel. Sie vertreten ihre Städte auf nationaler und internationaler Ebene und arbeiten aktuell an einer gemeinsamen Strategie für die Transformation. Dennoch besteht das Risiko, dass die Bemühungen für einen gerechten Strukturwandel in der Ukraine von Partikularinteressen unterwandert werden. Dies könnte die politisch fragile Region Donbas erneut destabilisieren. Deutschland und Europa machen gute, aber noch sehr vorsichtige Unterstützungsangebote für den Kohleausstieg. Diese entfalten bisher noch keine transformative Kraft

Phenotypic and genotypic variations within a single bacteriophage species

<p>Abstract</p> <p>Background</p> <p>Although horizontal gene transfer plays a pivotal role in bacteriophage evolution, many lytic phage genomes are clearly shaped by vertical evolution. We investigated the influence of minor genomic deletions and insertions on various phage-related phenotypic and serological properties.</p> <p>Findings</p> <p>We collected ten different isolates of <it>Pseudomonas aeruginosa </it>bacteriophage ϕKMV. All sequenced genomes (42-43 kb, long direct terminal repeats) are nearly identical, which intuitively implied strongly similar infections cycles. However, their latent periods vary between 21 and 28 minutes and they are able to lyse between 5 and 58% of a collection of 107 clinical <it>P. aeruginosa </it>strains. We also noted that phages with identical tail structures displayed profound differences in host spectra. Moreover, point mutations in tail and spike proteins were sufficient to evade neutralization by two phage-specific antisera, isolated from rabbits.</p> <p>Conclusion</p> <p>Although all analyzed phages are 83-97% identical at the genome level, they display a surprisingly large variation in various phenotypic properties. The small overlap in host spectrum and their ability to readily escape immune defences against a nearly identical phage are promising elements for the application of these phages in phage therapy.</p

Fluorescent-BOX-PCR for resolving bacterial genetic diversity, endemism and biogeography

<p>Abstract</p> <p>Background</p> <p>BOX-A1R-based repetitive extragenic palindromic-PCR (BOX-PCR) is one of the most used techniques in biogeography studies of microbial isolates. However the traditional separation of BOX-PCR patterns by agarose gel electrophoresis suffers many limitations. The aim of this research was to set up a fluorescent BOX-PCR (F-BOX-PCR) assay in which separation of PCR products is automated in a capillary electrophoresis system. F-BOX-PCR was compared with the traditional BOX-PCR using bacterial strains with different G+C content (<it>Bacillus cereus</it>; <it>Escherichia coli</it>; isolates of the family <it>Geodermatophilaceae</it>). Resolution, discriminatory power and reproducibility were evaluated by assaying different electrophoretic runs, PCR reactions and independent DNA extractions. BOX-PCR and F-BOX-PCR were compared for the analysis of 29 strains of <it>Modestobacter multiseptatus </it>isolated from three different microsites in an altered carbonatic wall from Cagliari, Italy, and 45 strains of <it>Streptococcus thermophilus </it>isolated from 34 samples of the hand-made, yogurt-like product Matsoni, collected in different locations in Georgia.</p> <p>Results</p> <p>Fluorophore 6-FAM proved more informative than HEX and BOX-PCR both in agarose gel electrophoresis (<it>p </it>< 0.004 and <it>p </it>< 0.00003) and in capillary electrophoresis (compared only with HEX, <it>p </it>< 2 × 10^-7). 6-FAM- and HEX-based F-BOX-PCR respectively detected up to 12.0 and 11.3 times more fragments than BOX-PCR. Replicate separations of F-BOX-PCR showed an accuracy of the size calling of ± 0.5 bp until 500 bp, constantly decreasing to ± 10 bp at 2000 bp. Cluster analysis of F-BOX-PCR profiles grouped <it>M. multiseptatus </it>strains according to the microsite of isolation and <it>S. thermophilus </it>strains according to the geographical origin of Matsoni, but resulted intermixed when a BOX-PCR dataset was used.</p> <p>Conclusion</p> <p>F-BOX-PCR represents an improved method for addressing bacterial biogeography studies both in term of sensitivity, reproducibility and data analysis.</p

Comparison of Staphylococcus Phage K with Close Phage Relatives Commonly Employed in Phage Therapeutics

peer-reviewedThe increase in antibiotic resistance in pathogenic bacteria is a public health danger requiring alternative treatment options, and this has led to renewed interest in phage therapy. In this respect, we describe the distinct host ranges of Staphylococcus phage K, and two other K-like phages against 23 isolates, including 21 methicillin-resistant S. aureus (MRSA) representative sequence types representing the Irish National MRSA Reference Laboratory collection. The two K-like phages were isolated from the Fersisi therapeutic phage mix from the Tbilisi Eliava Institute, and were designated B1 (vB_SauM_B1) and JA1 (vB_SauM_JA1). The sequence relatedness of B1 and JA1 to phage K was observed to be 95% and 94% respectively. In terms of host range on the 23 Staphylococcus isolates, B1 and JA1 infected 73.9% and 78.2% respectively, whereas K infected only 43.5%. Eleven open reading frames (ORFs) present in both phages B1 and JA1 but absent in phage K were identified by comparative genomic analysis. These ORFs were also found to be present in the genomes of phages (Team 1, vB_SauM-fRuSau02, Sb_1 and ISP) that are components of several commercial phage mixtures with reported wide host ranges. This is the first comparative study of therapeutic staphylococcal phages within the recently described genus Kayvirus

Application of Bacteriophages

The emergence of antibiotic-resistant bacteria and decrease in the discovery rate of novel antibiotics takes mankind back to the ‘pre-antibiotic era' and search for alternative treatments. Bacteriophages have been one of promising alternative agents which can be utilised for medicinal and biological control purposes in agriculture and related fields. The idea to treat bacterial infections with phages came out of the pioneering work of Félix d‘Hérelle but this was overshadowed by the success of antibiotics. Recent renewed interest in phage therapy is dictated by its advantages most importantly by their specificity against the bacterial targets. This prevents complications such as antibiotic-induced dysbiosis and secondary infections. This article is compiled by the participants of the Expert Round Table conference ‘Bacteriophages as tools for therapy, prophylaxis and diagnostics' (19-21 October 2015) at the Eliava Institute of Bacteriophage, Microbiology and Virology, Tbilisi, Georgia. The first paper from the Round Table was published in the Biotechnology Journal. This InFocus articleexpandsfromthispaperandincludes recent developments reported since then by the Expert Round Table participants, including the implementation of the Nagoya Protocol for the applications of bacteriophages