Real-Time and Secure Wireless Health Monitoring

We present a framework for a wireless health monitoring system using wireless networks such as ZigBee. Vital signals are collected and processed using a 3-tiered architecture. The first stage is the mobile device carried on the body that runs a number of wired and wireless probes. This device is also designed to perform some basic processing such as the heart rate and fatal failure detection. At the second stage, further processing is performed by a local server using the raw data transmitted by the mobile device continuously. The raw data is also stored at this server. The processed data as well as the analysis results are then transmitted to the service provider center for diagnostic reviews as well as storage. The main advantages of the proposed framework are (1) the ability to detect signals wirelessly within a body sensor network (BSN), (2) low-power and reliable data transmission through ZigBee network nodes, (3) secure transmission of medical data over BSN, (4) efficient channel allocation for medical data transmission over wireless networks, and (5) optimized analysis of data using an adaptive architecture that maximizes the utility of processing and computational capacity at each platform

Magnetometer-only attitude and rate determination for a gyro-less spacecraft

Attitude determination algorithms that requires only the earth's magnetic field will be useful for contingency conditions. One way to determine attitude is to use the time derivative of the magnetic field as the second vector in the attitude determination process. When no gyros are available, however, attitude determination becomes difficult because the rates must be propagated via integration of Euler's equation, which in turn requires knowledge of the initial rates. The spacecraft state to be determined must then include not only the attitude but also rates. This paper describes a magnetometer-only attitude determination scheme with no a priori knowledge of the spacecraft state, which uses a deterministic algorithm to initialize an extended Kalman filter. The deterministic algorithm uses Euler's equation to relate the time derivatives of the magnetic field in the reference and body frames and solves the resultant transcendental equations for the coarse attitude and rates. An important feature of the filter is that its state vector also includes corrections to the propagated rates, thus enabling it to generate highly accurate solutions. The method was tested using in-flight data from the Solar, Anomalous, and Magnetospheric Particles Explorer (SAMPEX), a Small Explorer spacecraft. SAMPEX data using several eclipse periods were used to simulate conditions that may exist during the failure of the on-board digital sun sensor. The combined algorithm has been found effective, yielding accuracies of 1.5 deg in attitude (within even nominal mission requirements) and 0.01 degree per second (deg/sec) in the rates

Advantages of estimating rate corrections during dynamic propagation of spacecraft rates: Applications to real-time attitude determination of SAMPEX

This paper describes real-time attitude determination results for the Solar, Anomalous, and Magnetospheric Particle Explorer (SAMPEX), a gyroless spacecraft, using a Kalman filter/Euler equation approach denoted the real-time sequential filter (RTSF). The RTSF is an extended Kalman filter whose state vector includes the attitude quaternion and corrections to the rates, which are modeled as Markov processes with small time constants. The rate corrections impart a significant robustness to the RTSF against errors in modeling the environmental and control torques, as well as errors in the initial attitude and rates, while maintaining a small state vector. SAMPLEX flight data from various mission phases are used to demonstrate the robustness of the RTSF against a priori attitude and rate errors of up to 90 deg and 0.5 deg/sec, respectively, as well as a sensitivity of 0.0003 deg/sec in estimating rate corrections in torque computations. In contrast, it is shown that the RTSF attitude estimates without the rate corrections can degrade rapidly. RTSF advantages over single-frame attitude determination algorithms are also demonstrated through (1) substantial improvements in attitude solutions during sun-magnetic field coalignment and (2) magnetic-field-only attitude and rate estimation during the spacecraft's sun-acquisition mode. A robust magnetometer-only attitude-and-rate determination method is also developed to provide for the contingency when both sun data as well as a priori knowledge of the spacecraft state are unavailable. This method includes a deterministic algorithm used to initialize the RTSF with coarse estimates of the spacecraft attitude and rates. The combined algorithm has been found effective, yielding accuracies of 1.5 deg in attitude and 0.01 deg/sec in the rates and convergence times as little as 400 sec

EvoPipes.net: Bioinformatic Tools for Ecological and Evolutionary Genomics

Recent increases in the production of genomic data are yielding new opportunities and challenges for biologists. Among the chief problems posed by next-generation sequencing are assembly and analyses of these large data sets. Here we present an online server, http://EvoPipes.net, that provides access to a wide range of tools for bioinformatic analyses of genomic data oriented for ecological and evolutionary biologists. The EvoPipes.net server includes a basic tool kit for analyses of genomic data including a next-generation sequence cleaning pipeline (SnoWhite), scaffolded assembly software (SCARF), a reciprocal best-blast hit ortholog pipeline (RBH Orthologs), a pipeline for reference protein-based translation and identification of reading frame in transcriptome and genomic DNA (TransPipe), a pipeline to identify gene families and summarize the history of gene duplications (DupPipe), and a tool for developing SSRs or microsatellites from a transcriptome or genomic coding sequence collection (findSSR). EvoPipes.net also provides links to other software developed for evolutionary and ecological genomics, including chromEvol and NU-IN, as well as a forum for discussions of issues relating to genomic analyses and interpretation of results. Overall, these applications provide a basic bioinformatic tool kit that will enable ecologists and evolutionary biologists with relatively little experience and computational resources to take advantage of the opportunities provided by next-generation sequencing in their systems

W3 Is a New Wax Locus That Is Essential for Biosynthesis of beta-Diketone, Development of Glaucousness, and Reduction of Cuticle Permeability in Common Wheat

Citation: Zhang, Z. Z., Wei, W. J., Zhu, H. L., Challa, G. S., Bi, C. L., Trick, H. N., & Li, W. L. (2015). W3 Is a New Wax Locus That Is Essential for Biosynthesis of beta-Diketone, Development of Glaucousness, and Reduction of Cuticle Permeability in Common Wheat. Plos One, 10(10), 21. doi:10.1371/journal.pone.0140524The cuticle plays important roles in plant development, growth and defense against biotic and abiotic attacks. Crystallized epicuticular wax, the outermost layer of cuticle, is visible as white-bluish glaucousness. In crops like barley and wheat, glaucousness is trait of adaption to the dry and hot cultivation conditions, and hentriacontane-14,16-dione (beta-diketone) and its hydroxy derivatives are the major and unique components of cuticular wax in the upper parts of adult plants. But their biosynthetic pathway and physiological role largely remain unknown. In the present research, we identified a novel wax mutant in wheat cultivar Bobwhite. The mutation is not allelic to the known wax production gene loci W1 and W2, and designated as W3 accordingly. Genetic analysis localized W3 on chromosome arm 2BS. The w3 mutation reduced 99% of beta-diketones, which account for 63.3% of the total wax load of the wild-type. W3 is necessary for beta-diketone synthesis, but has a different effect on beta-diketone hydroxylation because the hydroxy-beta-diketones to beta-diketone ratio increased 11-fold in the w3 mutant. Loss of beta-diketones caused failure to form glaucousness and significant increase of cuticle permeability in terms of water loss and chlorophyll efflux in the w3 mutant. Transcription of 23 cuticle genes from five functional groups was altered in the w3 mutant, 19 down-regulated and four up-regulated, suggesting a possibility that W3 encodes a transcription regulator coordinating expression of cuticle genes. Biosynthesis of beta-diketones in wheat and their implications in glaucousness formation and drought and heat tolerance were discussed.Citation: Zhang, Z., . . . & Wanlong, Li. (2015). W3 Is a New Wax Locus That Is Essential for Biosynthesis of β-Diketone, Development of Glaucousness, and Reduction of Cuticle Permeability in Common Wheat. PLoS One, 10(10), 1-21. https://doi.org/10.1371/journal.pone.014052

Extended gaussian ensemble solution and tricritical points of a system with long-range interactions

The gaussian ensemble and its extended version theoretically play the important role of interpolating ensembles between the microcanonical and the canonical ensembles. Here, the thermodynamic properties yielded by the extended gaussian ensemble (EGE) for the Blume-Capel (BC) model with infinite-range interactions are analyzed. This model presents different predictions for the first-order phase transition line according to the microcanonical and canonical ensembles. From the EGE approach, we explicitly work out the analytical microcanonical solution. Moreover, the general EGE solution allows one to illustrate in details how the stable microcanonical states are continuously recovered as the gaussian parameter $\gamma$ is increased. We found out that it is not necessary to take the theoretically expected limit $\gamma \to \infty$ to recover the microcanonical states in the region between the canonical and microcanonical tricritical points of the phase diagram. By analyzing the entropy as a function of the magnetization we realize the existence of unaccessible magnetic states as the energy is lowered, leading to a treaking of ergodicity.Comment: 8 pages, 5 eps figures. Title modified, sections rewritten, tricritical point calculations added. To appear in EPJ

Critical behavior of the frustrated antiferromagnetic six-state clock model on a triangular lattice

We study the anti-ferromagnetic six-state clock model with nearest neighbor interactions on a triangular lattice with extensive Monte-Carlo simulations. We find clear indications of two phase transitions at two different temperatures: Below $T_I$ a chirality order sets in and by a thorough finite size scaling analysis of the specific heat and the chirality correlation length we show that this transition is in the Ising universality class (with a non-vanishing chirality order parameter below $T_I$). At $T_{KT}(<T_I)$ the spin-spin correlation length as well as the spin susceptibility diverges according to a Kosterlitz-Thouless (KT) form and spin correlations decay algebraically below $T_{KT}$. We compare our results to recent x-ray diffraction experiments on the orientational ordering of CF$_3$Br monolayers physisorbed on graphite. We argue that the six-state clock model describes the universal feature of the phase transition in the experimental system and that the orientational ordering belongs to the KT universality class.Comment: 8 pages, 9 figure

SURFACE INDUCED FINITE-SIZE EFFECTS FOR FIRST ORDER PHASE TRANSITIONS

We consider classical lattice models describing first-order phase transitions, and study the finite-size scaling of the magnetization and susceptibility. In order to model the effects of an actual surface in systems like small magnetic clusters, we consider models with free boundary conditions. For a field driven transition with two coexisting phases at the infinite volume transition point $h=h_t$, we prove that the low temperature finite volume magnetization m_{\free}(L,h) per site in a cubic volume of size $L^d$ behaves like m_\free(L,h)=\frac{m_++m_-}2 + \frac{m_+-m_-}2 \tanh \bigl(\frac{m_+-m_-}2\,L^d\, (h-h_\chi(L))\bigr)+O(1/L), where $h_\chi(L)$ is the position of the maximum of the (finite volume) susceptibility and $m_\pm$ are the infinite volume magnetizations at $h=h_t+0$ and $h=h_t-0$, respectively. We show that $h_\chi(L)$ is shifted by an amount proportional to $1/L$ with respect to the infinite volume transitions point $h_t$ provided the surface free energies of the two phases at the transition point are different. This should be compared with the shift for periodic boun\- dary conditons, which for an asymmetric transition with two coexisting phases is proportional only to $1/L^{2d}$. One also consider the position $h_U(L)$ of the maximum of the so called Binder cummulant U_\free(L,h). While it is again shifted by an amount proportional to $1/L$ with respect to the infinite volume transition point $h_t$, its shift with respect to $h_\chi(L)$ is of the much smaller order $1/L^{2d}$. We give explicit formulas for the proportionality factors, and show that, in the leading $1/L^{2d}$ term, the relative shift is the same as that for periodic boundary conditions.Comment: 65 pages, amstex, 1 PostScript figur

Critical Behavior of the 3d Random Field Ising Model: Two-Exponent Scaling or First Order Phase Transition?

In extensive Monte Carlo simulations the phase transition of the random field Ising model in three dimensions is investigated. The values of the critical exponents are determined via finite size scaling. For a Gaussian distribution of the random fields it is found that the correlation length $\xi$ diverges with an exponent $\nu=1.1\pm0.2$ at the critical temperature and that $\chi\sim\xi^{2-\eta}$ with $\eta=0.50\pm0.05$ for the connected susceptibility and $\chi_{\rm dis}\sim\xi^{4-\bar{\eta}}$ with $\bar{\eta}=1.03\pm0.05$ for the disconnected susceptibility. Together with the amplitude ratio $A=\lim_{T\to T_c}\chi_{\rm dis}/\chi^2(h_r/T)^2$ being close to one this gives further support for a two exponent scaling scenario implying $\bar{\eta}=2\eta$. The magnetization behaves discontinuously at the transition, i.e. $\beta=0$, indicating a first order transition. However, no divergence for the specific heat and in particular no latent heat is found. Also the probability distribution of the magnetization does not show a multi-peak structure that is characteristic for the phase-coexistence at first order phase transition points.Comment: 14 pages, RevTeX, 11 postscript figures (fig9.ps and fig11.ps should be printed separately