Reconstructing extreme AMOC events through nudging of the ocean surface: a perfect model approach

While the Atlantic Meridional Overturning Circulation (AMOC) is thought to be a crucial component of the North Atlantic climate, past changes in its strength are challenging to quantify, and only limited information is available. In this study, we use a perfect model approach with the IPSL-CM5A-LR model to assess the performance of several surface nudging techniques in reconstructing the variability of the AMOC. Special attention is given to the reproducibility of an extreme positive AMOC peak from a preindustrial control simulation. Nudging includes standard relaxation techniques towards the sea surface temperature and salinity anomalies of this target control simulation, and/or the prescription of the wind-stress fields. Surface nudging approaches using standard fixed restoring terms succeed in reproducing most of the target AMOC variability, including the timing of the extreme event, but systematically underestimate its amplitude. A detailed analysis of the AMOC variability mechanisms reveals that the underestimation of the extreme AMOC maximum comes from a deficit in the formation of the dense water masses in the main convection region, located south of Iceland in the model. This issue is largely corrected after introducing a novel surface nudging approach, which uses a varying restoring coefficient that is proportional to the simulated mixed layer depth, which, in essence, keeps the restoring time scale constant. This new technique substantially improves water mass transformation in the regions of convection, and in particular, the formation of the densest waters, which are key for the representation of the AMOC extreme. It is therefore a promising strategy that may help to better constrain the AMOC variability and other ocean features in the models. As this restoring technique only uses surface data, for which better and longer observations are available, it opens up opportunities for improved reconstructions of the AMOC over the last few decades

Iterative Structure-Based Peptide-Like Inhibitor Design against the Botulinum Neurotoxin Serotype A

The botulinum neurotoxin serotype A light chain (BoNT/A LC) protease is the catalytic component responsible for the neuroparalysis that is characteristic of the disease state botulism. Three related peptide-like molecules (PLMs) were designed using previous information from co-crystal structures, synthesized, and assayed for in vitro inhibition against BoNT/A LC. Our results indicate these PLMS are competitive inhibitors of the BoNT/A LC protease and their Ki values are in the nM-range. A co-crystal structure for one of these inhibitors was determined and reveals that the PLM, in accord with the goals of our design strategy, simultaneously involves both ionic interactions via its P1 residue and hydrophobic contacts by means of an aromatic group in the P2′ position. The PLM adopts a helical conformation similar to previously determined co-crystal structures of PLMs, although there are also major differences to these other structures such as contacts with specific BoNT/A LC residues. Our structure further demonstrates the remarkable plasticity of the substrate binding cleft of the BoNT/A LC protease and provides a paradigm for iterative structure-based design and development of BoNT/A LC inhibitors

Summer Mistral at the Exit of the Rhone Valley

The paper examines the three-dimensional structure and dynamics of the mistral at the Rhône valley exit on 28 June 2001. The mistral refers to a severe wind that develops along the Rhône valley in southern France. This summer mistral event was documented in the framework of the ESCOMPTE field experiment. The dynamical processes driving the circulation of the mistral in the Rhône valley and particularly wake formation and planetary boundary layer (PBL) inhomogeneity at the scale of Rhône valley delta are investigated. Several important data sources are used (airborne Doppler lidar, radiosondes and surface stations) as well as non-hydrostatic mesoscale simulations. This paper analyses experimentally, numerically and theoretically the mechanism of wake formation. It shows that the flow impinging on the Alpine range and the Massif Central becomes supercritical all along the ridge line, including the Rhône valley and continues to accelerate in the lee regions until a hydraulic jump occurs. It leads to the formation of wakes behind and close to the mountain peaks. Compared to the Massif Central wake, the origin of the western Alps wake is rather complicated. In this study, the observations and simulations suggest a combined wall separation/gravity wave breaking mechanism to explain the western Alps wake. Indeed, it is shown that in addition to the flow descending the western Alps slopes and experiencing a strong hydraulic jump, the point where the mistral flow separates from the eastern flank of the Rhône valley located at about 44°N is associated with a 'flank-shock' which is an oblique hydraulic jump (i.e.the downstream Froude number is supercritical). Wake formation in the lee of the Alps and the Massif Central causes large inhomogeneity of the PBL with differences between land and sea. In the Massif Central and western Alps wakes, the continental PBL is deeper (1.8 km) than in the mistral flow (1 km), which is consistent with a subcritical regime associated with enhanced turbulent mixing. The supercritical air flow, descending the Massif Central and Alps slopes and transitioning to subcritical flow, increases the near-surface air temperature due to the föhn effect. Over the Mediterranean, the surface heat fluxes are slightly negative (between–50 and 0 W m –2) and the main source of PBL turbulence is mechanical (wind shear). The PBL depth within the mistral flow does not vary over land (1 km), whereas the absence of convection but also of strong winds prevent PBL development over the sea in the wakes of the Massif Central and the Alps (PBL depth of about 0.5 km)