An alternate algorithm for correction of the scanning multichannel microwave radiometer polarization radiances using Nimbus-7 observed data

The manner in which Nimbus-7 scanning multichannel microwave radiometer (SMMR) scan radiance data was used to determine its operational characteristics is described. The predicted SMMR scan radiance was found to be in disagreement at all wavelengths with a large area of average measured ocean radiances. A modified model incorporating a different phase shift for each of the SMMR horizontal and vertical polarization channels was developed and found to provide good data correlation. Additional study is required to determine the validity and accuracy of this model

On the role of actuation for the control of streaky structures in boundary layers

This work deals with the closed-loop control of streaky structures induced by free-stream turbulence in a zero-pressure gradient, transitional boundary layer, by means of localized sensors and actuators. A linear quadratic gaussian regulator is considered along with a system identification technique to build reduced-order models for control. Three actuators are developed with different spatial supports, corresponding to a baseline shape with only vertical forcing, and to two other shapes obtained by different optimization procedures. A computationally efficient method is derived to obtain an actuator which aims to induce the exact structures which are inside the boundary layer, given in terms of their first spectral proper orthogonal decomposition mode, and an actuator that maximizes the energy of induced downstream structures. Two free-stream turbulence levels were evaluated, corresponding to 3.0% and 3.5%, and closed-loop control is applied in large-eddy simulations of transitional boundary layers. All three actuators lead to significant delays in the transition to turbulence and were shown to be robust to mild variations in the free-stream turbulence levels. Differences are understood in terms of the SPOD of actuation and FST-induced fields along with the causality of the control scheme. The actuator optimized to generate the leading downstream SPOD mode, representing the streaks in the open-loop flow, leads to the highest transition delay, which can be understood due to its capability of closely cancelling structures in the boundary layer. However, it is shown that even with the actuator located downstream of the input measurement it may become impossible to cancel incoming disturbances in a causal way, depending on the wall-normal position of the output and on the actuator considered, which limits sensor and actuator placement capable of good closed-loop performance.Comment: 33 pages, 19 figure

Jet-edge interaction tones

Motivated by the problem of jet-flap interaction noise, we study the tonal dynamics that occur when a sharp edge is placed in the hydrodynamic nearfield of an isothermal turbulent jet. We perform hydrodynamic and acoustic pressure measurements in order to characterise the tones as a function of Mach number and streamwise edge position. The distribution of spectral peaks observed, as a function of Mach number, cannot be explained using the usual edge-tone scenario, in which resonance is underpinned by coupling between downstream-travelling Kelvin-Helmholtz wavepackets and upstream-travelling sound waves. We show, rather, that the strongest tones are due to coupling between the former and upstream-travelling jet modes recently studied by Towne et al. (2017) and Schmidt et al. (2017). We also study the band-limited nature of the resonance, showing a high-frequency cut-off to be due to the frequency dependence of the upstream-travelling waves. At high Mach number these become evanescent above a certain frequency, whereas at low Mach number they become progressively trapped with increasing frequency, a consequence of which is their not being reflected in the nozzle plane. Additionally, a weaker, low-frequency, forced-resonance regime is identified that involves the same upstream travelling jet modes but that couple, in this instance, with downstream-travelling sound waves. It is suggested that the existence of two resonance regimes may be due to the non-modal nature of wavepacket dynamics at low-frequency.Comment: 21 pages, 15 figure

Environmental epigenetics in zebrafish

It is widely accepted that the epigenome can act as the link between environmental cues, both external and internal, to the organism and phenotype by converting the environmental stimuli to phenotypic responses through changes in gene transcription outcomes. Environmental stress endured by individual organisms can also enforce epigenetic variations in offspring that had never experienced it directly, which is termed transgenerational inheritance. To date, research in the environmental epigenetics discipline has used a wide range of both model and non-model organisms to elucidate the various epigenetic mechanisms underlying the adaptive response to environmental stimuli. In this review, we discuss the advantages of the zebrafish model for studying how environmental toxicant exposures affect the regulation of epigenetic processes, especially DNA methylation, which is the best-studied epigenetic mechanism. We include several very recent studies describing the state-of-the-art knowledge on this topic in zebrafish, together with key concepts in the function of DNA methylation during vertebrate embryogenesis

Lift-up, Kelvin-Helmholtz and Orr mechanisms in turbulent jets

Three amplification mechanisms present in turbulent jets, namely lift-up, Kelvin–Helmholtz and Orr, are characterized via global resolvent analysis and spectral proper orthogonal decomposition (SPOD) over a range of Mach numbers. The lift-up mechanism was recently identified in turbulent jets via local analysis by Nogueira et al. (J. Fluid Mech., vol. 873, 2019, pp. 211–237) at low Strouhal number ( St ) and non-zero azimuthal wavenumbers ( m ). In these limits, a global SPOD analysis of data from high-fidelity simulations reveals streamwise vortices and streaks similar to those found in turbulent wall-bounded flows. These structures are in qualitative agreement with the global resolvent analysis, which shows that they are a response to upstream forcing of streamwise vorticity near the nozzle exit. Analysis of mode shapes, component-wise amplitudes and sensitivity analysis distinguishes the three mechanisms and the regions of frequency–wavenumber space where each dominates, finding lift-up to be dominant as St/m→0 . Finally, SPOD and resolvent analyses of localized regions show that the lift-up mechanism is present throughout the jet, with a dominant azimuthal wavenumber inversely proportional to streamwise distance from the nozzle, with streaks of azimuthal wavenumber exceeding five near the nozzle, and wavenumbers one and two most energetic far downstream of the potential core

Open orbifold Gromov-Witten invariants of [C^3/Z_n]: localization and mirror symmetry

We develop a mathematical framework for the computation of open orbifold Gromov-Witten invariants of [C^3/Z_n], and provide extensive checks with predictions from open string mirror symmetry. To this aim we set up a computation of open string invariants in the spirit of Katz-Liu, defining them by localization. The orbifold is viewed as an open chart of a global quotient of the resolved conifold, and the Lagrangian as the fixed locus of an appropriate anti-holomorphic involution. We consider two main applications of the formalism. After warming up with the simpler example of [C^3/Z_3], where we verify physical predictions of Bouchard, Klemm, Marino and Pasquetti, the main object of our study is the richer case of [C^3/Z_4], where two different choices are allowed for the Lagrangian. For one choice, we make numerical checks to confirm the B-model predictions; for the other, we prove a mirror theorem for orbifold disc invariants, match a large number of annulus invariants, and give mirror symmetry predictions for open string invariants of genus \leq 2.Comment: 44 pages + appendices; v2: exposition improved, misprints corrected, version to appear on Selecta Mathematica; v3: last minute mistake found and fixed for the symmetric brane setup of [C^3/Z_4]; in pres

Identification of GABA receptor genes and evidence of GABA signaling during embryogenesis of the sea urchin

Gamma-aminobutyric acid (GABA) is the principal inhibitory neurotransmitter in the mammalian central nervous system and acts via ionotropic (GABAA-Rs) and metabotropic (GABAB-Rs) receptors. GABAA-Rs are Cl- selective hetero-pentameric channels assembled by combinations of 19 distinct gene products. Instead, GABAB-Rs are bi-subunit G-protein coupled receptors linked to K+ or Ca2+ channels. Dysfunctions of GABA-signaling (GS) cause psychotic disorders and correlate with epigenetic alterations, such as over-expression of DNA methyl transferase-1 which in turn imposes iper-methylation of GABA-regulated genes. The sea urchin embryo, which presents a rudimentary nervous system, offers a big opportunity to study the GS and its potential epigenetic implications in a simple eukaryote model. To this purpose, we performed a comprehensive in silico analysis of the sea urchin genome and identified a 450 Kb long cluster containing two genes encoding for the GABAB-R subunits, and two genes respectively encoding for a \u3b1/\u3b3/\u3b5-type and a \u3b2/\u3c1/\u3b4/\u3c4/\u3c0-type GABA B A-R subunit. From an evolutionary perspective, this result revealed a unique genomic organization of these genes in sea urchin. Next, to preliminarily evaluate the role of GS during development, Paracentrotus lividus embryos were cultured in the presence of GABA at concentrations ranging from 0.01 to 1.0 mM. Compared to controls, treated embryos showed aberrations in axial patterning, with a dose-dependent effect. In particular, at 48 hours post-fertilization control embryos were normal bilateral symmetric plutei whereas GABA-treated embryos displayed a radial organization with supranumerary spicules. Washout experiments allowed to determine that the period of sensitivity is restricted from the blastula to the gastrula stage. Altogether, these results suggest that dysregulation of GS affects the polarization of the ectoderm. Although preliminary, this study provide the first evidence of GS activity during development of echinoderms

Nonsequential Double Ionization with Polarization-gated Pulses

We investigate laser-induced nonsequential double ionization by a polarization-gated laser pulse, constructed employing two counter-rotating circularly polarized few cycle pulses with a time delay $T_{d}$. We address the problem within a classical framework, and mimic the behavior of the quantum-mechanical electronic wave packet by means of an ensemble of classical electron trajectories. These trajectories are initially weighted with the quasi-static tunneling rate, and with suitably chosen distributions for the momentum components parallel and perpendicular to the laser-field polarization, in the temporal region for which it is nearly linearly polarized. We show that, if the time delay $T_{d}$ is of the order of the pulse length, the electron-momentum distributions, as functions of the parallel momentum components, are highly asymmetric and dependent on the carrier-envelope (CE) phase. As this delay is decreased, this asymmetry gradually vanishes. We explain this behavior in terms of the available phase space, the quasi-static tunneling rate and the recollision rate for the first electron, for different sets of trajectories. Our results show that polarization-gating technique may provide an efficient way to study the NSDI dynamics in the single-cycle limit, without employing few-cycle pulses.Comment: 17 pages, 6 figure

Ectopic hbox12 Expression Evoked by Histone Deacetylase Inhibition Disrupts Axial Specification of the Sea Urchin Embryo

Dorsal/ventral patterning of the sea urchin embryo depends upon the establishment of a Nodal-expressing ventral organizer. Recently, we showed that spatial positioning of this organizer relies on the dorsal-specific transcription of the Hbox12 repressor. Building on these findings, we determined the influence of the epigenetic milieu on the expression of hbox12 and nodal genes. We find that Trichostatin-A, a potent and selective histone-deacetylases inhibitor, induces histone hyperacetylation in hbox12 chromatin, evoking broad ectopic expression of the gene. Transcription of nodal concomitantly drops, prejudicing dorsal/ventral polarity of the resulting larvae. Remarkably, impairing hbox12 function, either in a spatially-restricted sector or in the whole embryo, specifically rescues nodal transcription in Trichostatin-A-treated larvae. Beyond strengthen the notion that nodal expression is not allowed in the presence of functional Hbox12 in the same cells, these results highlight a critical role of histone deacetylases in regulating the spatial expression of hbox12