Estimation of genetic parameters for height using spatial analysis in Tsuga heterophylla full-sibling family trials in British Columbia

Non-spatial and spatial analyses were carried out to study the effects on genetic parameters in ten-year height growth data across two series of 10 large second-generation full-sib progeny trials of western hemlock [Tsuga heterophylla (Raf.) Sarg.] in British Columbia. To account for different and complex patterns of environmental heterogeneity, spatial single trial analyses were conducted using an individual-tree mixed model with a two-dimensional smoothing surface with tensor product of B-spline bases. The spatial single trial analysis, in all cases, showed sizeable lower Deviance Information Criterion values relative to the non-spatial analysis. Also, fitting a surface displayed a consistent reduction in the posterior mean as well as a decrease in the standard deviations of error variance, no appreciable changes in the additive variance, an increase of individual narrow-sense heritability, and accuracy of breeding values. The tensor product of cubic basis functions of B-spline based on a mixed model framework does provide a useful new alternative to model different and complex patterns of spatial variability within sites in forest genetic trials. Individual narrow-sense heritabilities estimates from the spatial single trial analyses were low (average of 0.06), but typical of this species. Estimated dominance relative to additive variances were unstable across sites (from 0.00 to 1.59). The implications of these estimations will be discussed with respect to the western hemlock genetic improvement program in British Columbia.Fil: Cappa, Eduardo Pablo. British Columbia Ministry of Forests and Range; Canadá. University of British Columbia; Canadá. Instituto Nacional de Tecnología Agropecuaria. Centro de Investigación de Recursos Naturales. Instituto de Recursos Biológicos; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Yanchuk, A. D.. British Columbia Ministry of Forests and Range; CanadáFil: Cartwright, C. V.. British Columbia Ministry of Forests and Range; Canad

Global Diffusion in a Realistic Three-Dimensional Time-Dependent Nonturbulent Fluid Flow

We introduce and study the first model of an experimentally realizable three-dimensional time-dependent nonturbulent fluid flow to display the phenomenon of global diffusion of passive-scalar particles at arbitrarily small values of the nonintegrable perturbation. This type of chaotic advection, termed {\it resonance-induced diffusion\/}, is generic for a large class of flows.Comment: 4 pages, uuencoded compressed postscript file, to appear in Phys. Rev. Lett. Also available on the WWW from http://formentor.uib.es/~julyan/, or on paper by reques

An Arbitrary Curvilinear Coordinate Method for Particle-In-Cell Modeling

A new approach to the kinetic simulation of plasmas in complex geometries, based on the Particle-in- Cell (PIC) simulation method, is explored. In the two dimensional (2d) electrostatic version of our method, called the Arbitrary Curvilinear Coordinate PIC (ACC-PIC) method, all essential PIC operations are carried out in 2d on a uniform grid on the unit square logical domain, and mapped to a nonuniform boundary-fitted grid on the physical domain. As the resulting logical grid equations of motion are not separable, we have developed an extension of the semi-implicit Modified Leapfrog (ML) integration technique to preserve the symplectic nature of the logical grid particle mover. A generalized, curvilinear coordinate formulation of Poisson's equations to solve for the electrostatic fields on the uniform logical grid is also developed. By our formulation, we compute the plasma charge density on the logical grid based on the particles' positions on the logical domain. That is, the plasma particles are weighted to the uniform logical grid and the self-consistent mean electrostatic fields obtained from the solution of the logical grid Poisson equation are interpolated to the particle positions on the logical grid. This process eliminates the complexity associated with the weighting and interpolation processes on the nonuniform physical grid and allows us to run the PIC method on arbitrary boundary-fitted meshes.Comment: Submitted to Computational Science & Discovery December 201

Robust Magnetic Polarons in Type-II (Zn,Mn)Te Quantum Dots

We present evidence of magnetic ordering in type-II (Zn, Mn) Te quantum dots. This ordering is attributed to the formation of bound magnetic polarons caused by the exchange interaction between the strongly localized holes and Mn within the dots. In our photoluminescence studies, the magnetic polarons are detected at temperatures up to ~ 200 K, with a binding energy of ~ 40 meV. In addition, these dots display an unusually small Zeeman shift with applied field (2 meV at 10 T). This behavior is explained by a small and weakly temperature-dependent magnetic susceptibility due to anti-ferromagnetic coupling of the Mn spins

An Absolute Flux Density Measurement of the Supernova Remnant Casseopia A at 32 GHz

We report 32 GHz absolute flux density measurements of the supernova remnant Cas A, with an accuracy of 2.5%. The measurements were made with the 1.5-meter telescope at the Owens Valley Radio Observatory. The antenna gain had been measured by NIST in May 1990 to be $0.505 \pm 0.007 \frac{{\rm mK}}{{\rm Jy}}$. Our observations of Cas A in May 1998 yield $S_{cas,1998} = 194 \pm 5 {\rm Jy}$. We also report absolute flux density measurements of 3C48, 3C147, 3C286, Jupiter, Saturn and Mars.Comment: 30 pages, 4 figures; accepted for publication by AJ. Revised systematic error budget, corrected typos, and added reference

Quantum and classical descriptions of a measuring apparatus

A measuring apparatus is described by quantum mechanics while it interacts with the quantum system under observation, and then it must be given a classical description so that the result of the measurement appears as objective reality. Alternatively, the apparatus may always be treated by quantum mechanics, and be measured by a second apparatus which has such a dual description. This article examines whether these two different descriptions are mutually consistent. It is shown that if the dynamical variable used in the first apparatus is represented by an operator of the Weyl-Wigner type (for example, if it is a linear coordinate), then the conversion from quantum to classical terminology does not affect the final result. However, if the first apparatus encodes the measurement in a different type of operator (e.g., the phase operator), the two methods of calculation may give different results.Comment: 18 pages LaTeX (including one encapsulated PostScript figure

Recent advances on IMF research

Here I discuss recent work on brown dwarfs, massive stars and the IMF in general. The stellar IMF can be well described by an invariant two-part power law in present-day star-formation events within the Local Group of galaxies. It is nearly identical in shape to the pre-stellar core mass function. The majority of brown dwarfs follow a separate IMF. Evidence from globular clusters and ultra-compact dwarf galaxies has emerged that IMFs may have been top heavy depending on the star-formation rate density. The IGIMF then ranges from bottom heavy at low galaxy-wide star formation rates to being top-heavy in galaxy-scale star bursts.Comment: 6 pages, LaTeX, to appear in The Labyrinth of Star Formation, 18-22 June 2012, Crete, (eds.) D. Stamatellos, S. Goodwin, and D. Ward-Thompson, Springer, in press; replaced version: very minor corrections plus the addition of reference Smith & Lucey (2013) on the bottom-heavy IMF in elliptical galaxie

The impact of storage conditions on human stool 16S rRNA microbiome composition and diversity

Background: Multiple factors can influence stool sample integrity upon sample collection. Preservation of faecal samples for microbiome studies is therefore an important step, particularly in tropical regions where resources are limited and high temperatures may significantly influence microbiota profiles. Freezing is the accepted standard to preserve faecal samples however, cold chain methods are often unfeasible in fieldwork scenarios particularly in low and middle-income countries and alternatives are required. This study therefore aimed to address the impact of different preservative methods, time-to-freezing at ambient tropical temperatures, and stool heterogeneity on stool microbiome diversity and composition under real-life physical environments found in resource-limited fieldwork conditions. Methods: Inner and outer stool samples collected from one specimen obtained from three children were stored using different storage preservation methods (raw, ethanol and RNAlater) in a Ugandan field setting. Mixed stool was also stored using these techniques and frozen at different time-to-freezing intervals post-collection from 0–32 h. Metataxonomic profiling was used to profile samples, targeting the V1–V2 regions of 16S rRNA with samples run on a MiSeq platform. Reads were trimmed, combined and aligned to the Greengenes database. Microbial diversity and composition data were generated and analysed using Quantitative Insights Into Microbial Ecology and R software. Results: Child donor was the greatest predictor of microbiome variation between the stool samples, with all samples remaining identifiable to their child of origin despite the stool being stored under a variety of conditions. However, significant differences were observed in composition and diversity between preservation techniques, but intra-preservation technique variation was minimal for all preservation methods, and across the time-to-freezing range (0–32 h) used. Stool heterogeneity yielded no apparent microbiome differences. Conclusions: Stool collected in a fieldwork setting for comparative microbiome analyses should ideally be stored as consistently as possible using the same preservation method throughout

Traveling wave solutions in the Burridge-Knopoff model

The slider-block Burridge-Knopoff model with the Coulomb friction law is studied as an excitable medium. It is shown that in the continuum limit the system admits solutions in the form of the self-sustained shock waves traveling with constant speed which depends only on the amount of the accumulated stress in front of the wave. For a wide class of initial conditions the behavior of the system is determined by these shock waves and the dynamics of the system can be expressed in terms of their motion. The solutions in the form of the periodic wave trains and sources of counter-propagating waves are analyzed. It is argued that depending on the initial conditions the system will either tend to synchronize or exhibit chaotic spatiotemporal behavior.Comment: 12 pages (ReVTeX), 7 figures (Postscript) to be published in Phys. Rev.