Mercury transfer from watersheds to aquatic environments following the erosion of agrarian soils: A molecular biomarker approach

Lake St. Pierre, an important freshwater location for sports and commercial fisheries in Canada, is composed of a 120 km2 stretchof the St. Lawrence River, located at the center of the St. Lawrence Lowlands. Receiving its waters from the St. Franc¸ ois, Yamaska, Ottawa, and St. Lawrence Rivers, it is subjected to important inputs of mercury (Hg) and suspended particles eroded from its watershed. This study aims at tracing back the origin of terrigenous Hg loadings to Lake St. Pierre. The specific phenol signatures yielded by a mild oxidation of the terrestrial organic matter (TOM) carried in the water column was used as a tracer to identify the different sources of terrigenous Hg to the lake. Our results demonstrate that most of the Hg bound to suspended particulate matter (SPM-bound Hg) found in Lake St. Pierre is associated withTOM. We were also able to distinguish the relative influence that forested soils, mainly drained by the Ottawa River, and agrarian soils, located on nearby watersheds, exert on the lake’s Hg burden. Our data strongly suggest that the erosion of vast areas of agrarian soils, drained by the Yamaska and St. Franc¸ois rivers to Lake St. Pierre, greatly facilitates the transfer of Hg from the watersheds to the lake. This study stresses the need to improve the management of agrarian soils and protect them from extensive erosion in order to preserve the integrity of the fish resources harvested in Lake St. Pierre

Modular organization of the white spruce (Picea glauca) transcriptome reveals functional organization and evolutionary signatures

Transcript profiling has shown the molecular bases of several biological processes in plants but few studies have developed an understanding of overall transcriptome variation. We investigated transcriptome structure in white spruce (Picea glauca), aiming to delineate its modular organization and associated functional and evolutionary attributes. Microarray analyses were used to: identify and functionally characterize groups of co-expressed genes; investigate expressional and functional diversity of vascular tissue preferential genes which were conserved among Picea species, and identify expression networks underlying wood formation. We classified 22 857 genes as variable (79%; 22 coexpression groups) or invariant (21%) by profiling across several vegetative tissues. Modular organization and complex transcriptome restructuring among vascular tissue preferential genes was revealed by their assignment to coexpression groups with partially overlapping profiles and partially distinct functions. Integrated analyses of tissue-based and temporally variable profiles identified secondary xylem gene networks, showed their remodelling over a growing season and identified PgNAC-7 (no apical meristerm (NAM), Arabidopsis transcription activation factor (ATAF) and cup-shaped cotyledon (CUC) transcription factor 007 in Picea glauca) as a major hub gene specific to earlywood formation. Reference profiling identified comprehensive, statistically robust coexpressed groups, revealing that modular organization underpins the evolutionary conservation of the transcriptome structure. © 2015 The Authors

A platform for a dialogue to be continued. Forward thinking in agriculture and food

International audienceHow can agriculture produce food for 9 billion inhabitants in 2050 and achieve the Millennium Development Goals of alleviating poverty, reducing hunger and protecting the environment? In order to take up these challenges and to design tomorrow's food and agriculture systems, research organizations have to define strategies and options, and public policy makers their priorities from now on, relying on foresight studies. Various studies have been conducted to assess scenarios for the long-term future of food and agriculture in the world. Each one has its own objectives, methodologies, and results. Analyzing, comparing and discussing hypotheses, methodologies and results were the objectives of the FI4IAR/CTA seminar "Thinking Forward: assessments, projections and foresights", organized during the GCARD 2010 process. This dialogue, which sometimes led to scientific disputes, proved productive and encouraging. Is it a forum that should be continued in the future

The MHC class I peptide repertoire is molded by the transcriptome

Under steady-state conditions, major histocompatibility complex (MHC) I molecules are associated with self-peptides that are collectively referred to as the MHC class I peptide (MIP) repertoire. Very little is known about the genesis and molecular composition of the MIP repertoire. We developed a novel high-throughput mass spectrometry approach that yields an accurate definition of the nature and relative abundance of unlabeled peptides presented by MHC I molecules. We identified 189 and 196 MHC I–associated peptides from normal and neoplastic mouse thymocytes, respectively. By integrating our peptidomic data with global profiling of the transcriptome, we reached two conclusions. The MIP repertoire of primary mouse thymocytes is biased toward peptides derived from highly abundant transcripts and is enriched in peptides derived from cyclins/cyclin-dependent kinases and helicases. Furthermore, we found that ∼25% of MHC I–associated peptides were differentially expressed on normal versus neoplastic thymocytes. Approximately half of those peptides are derived from molecules directly implicated in neoplastic transformation (e.g., components of the PI3K–AKT–mTOR pathway). In most cases, overexpression of MHC I peptides on cancer cells entailed posttranscriptional mechanisms. Our results show that high-throughput analysis and sequencing of MHC I–associated peptides yields unique insights into the genesis of the MIP repertoire in normal and neoplastic cells

Bovine tuberculosis in Buffaloes, Southern Africa

Funded by European Union Partnership, South East Lowveld Project; Ministere Francais des Affaires Etrangeres; United States Fish and Wildlife Service, Wildlife without Borders, Africa Progra

The community of root fungi is associated with the growth rate of Norway spruce ( Picea abies )

Our study delved into the relationship between root‐associated fungi, gene expression and plant morphology in Norway spruce cuttings derived from both slow‐and fast‐growing trees. We found no clear link between the gene expression patterns of adventitious roots and the growth phenotype, suggesting no fundamental differences in the receptiveness to fungal symbionts between the phenotypes. Interestingly, saplings from slow‐growing parental trees exhibited a higher richness of ectomycorrhizal species and larger roots. Some ectomycorrhizal species, typically found on mature spruces, were more prevalent on saplings from slow‐growing spruces. The ericoid mycorrhizal fungus, Hyaloscypha hepaticola, showed a stronger association with saplings from fast‐growing spruces. Moreover, saplings from slow‐growing spruces had a greater number of Ascomycete taxa and free‐living saprotrophic fungi. Aboveground sapling stems displayed some phenotypic variation; saplings from fast‐growing phenotypes had longer branches but fewer whorls in their stems compared to those from the slow‐growing group. In conclusion, the observed root‐associated fungi and phenotypic characteristics in young Norway spruces may play a role in their long‐term growth rate. This suggests that the early interactions between spruces and fungi could potentially influence their growth trajectory

Massive Gravity on de Sitter and Unique Candidate for Partially Massless Gravity

We derive the decoupling limit of Massive Gravity on de Sitter in an arbitrary number of space-time dimensions d. By embedding d-dimensional de Sitter into d+1-dimensional Minkowski, we extract the physical helicity-1 and helicity-0 polarizations of the graviton. The resulting decoupling theory is similar to that obtained around Minkowski. We take great care at exploring the partially massless limit and define the unique fully non-linear candidate theory that is free of the helicity-0 mode in the decoupling limit, and which therefore propagates only four degrees of freedom in four dimensions. In the latter situation, we show that a new Vainshtein mechanism is at work in the limit m^2\to 2 H^2 which decouples the helicity-0 mode when the parameters are different from that of partially massless gravity. As a result, there is no discontinuity between massive gravity and its partially massless limit, just in the same way as there is no discontinuity in the massless limit of massive gravity. The usual bounds on the graviton mass could therefore equivalently well be interpreted as bounds on m^2-2H^2. When dealing with the exact partially massless parameters, on the other hand, the symmetry at m^2=2H^2 imposes a specific constraint on matter. As a result the helicity-0 mode decouples without even the need of any Vainshtein mechanism.Comment: 30 pages. Some clarifications and references added. New subsection 'Symmetry and Counting in the Full Theory' added. New appendix 'St\"uckelberg fields in the Na\"ive approach' added. Matches version published in JCA