Reflections and Insights on the Evolution of the Biological Remediation of Contaminated Soils

The field of soil biological remediation was initially focused on the use of microorganisms. For organic contaminants, biostimulation and bioaugmentation were the strategies of choice. For heavy metals, bioremediation was centered on the feasibility of using microorganisms to reduce metal toxicity. Partly due to the impossibility to degrade metals, phytoremediation emerged proposing the use of plants to extract them (phytoextraction) or reduce their bioavailability (phytostabilization). Later, microbial-assisted phytoremediation addressed the inoculation of plant growth-promoting microorganisms to improve phytoremediation efficiency. Similarly, plant-assisted bioremediation examined the stimulatory effect of plant growth on the microbial degradation of soil contaminants. The combination of plants and microorganisms is nowadays often recommended for mixed contaminated soils. Finally, phytomanagement emerged as a phytotechnology focused on the use of plants and associated microorganisms to decrease contaminant linkages, maximize ecosystem services, and provide economic revenues. Although biological remediation methods have been in use for decades, the truth is that they have not yet yielded the expected results. Here, we claim that much more research is needed to make the most of the many ways that microorganisms have evolutionary developed to access the contaminants and to better understand the soil microbial networks responsible, to a great extent, for soil functioning.This work was supported by the European Union through the Interreg SUDOE Program (Project Phy2SUDOE SOE4/P5/E1021)

A case for the importance of following antibiotic resistant bacteria throughout the soil food web

It is necessary to complement next-generation sequencing data on the soil resistome with theoretical knowledge provided by ecological studies regarding the spread of antibiotic resistant bacteria (ARB) in the abiotic and, especially, biotic fraction of the soil ecosystem. Particularly, when ARB enter agricultural soils as a consequence of the application of animal manure as fertilizer, from a microbial ecology perspective, it is important to know their fate along the soil food web, that is, throughout that complex network of feeding interactions among members of the soil biota that has crucial effects on species richness and ecosystem productivity and stability. It is critical to study how the ARB that enter the soil through the application of manure can reach other taxonomical groups (e.g., fungi, protists, nematodes, arthropods, earthworms), paying special attention to their presence in the gut microbiomes of mesofauna-macrofauna and to the possibilities for horizontal gene transfer of antibiotic resistant genes.This work was supported by MCIN/AEI/10.13039/501100011033 (PID2020-116495RB-I00), Basque Government (IT1578-22), and Euskampus – JRL Environmental Antibiotic Resistance

Incorporation of Antibiotics into Solid Lipid Nanoparticles: A Promising Approach to Reduce Antibiotic Resistance Emergence

Antimicrobial resistance is one of the biggest threats to global health as current antibiotics are becoming useless against resistant infectious pathogens. Consequently, new antimicrobial strategies are urgently required. Drug delivery systems represent a potential solution to improve current antibiotic properties and reverse resistance mechanisms. Among different drug delivery systems, solid lipid nanoparticles represent a highly interesting option as they offer many advantages for nontoxic targeted drug delivery. Several publications have demonstrated the capacity of SLNs to significantly improve antibiotic characteristics increasing treatment efficiency. In this review article, antibiotic-loaded solid lipid nanoparticle-related works are analyzed to summarize all information associated with applying these new formulations to tackle the antibiotic resistance problem. The main antimicrobial resistance mechanisms and relevant solid lipid nanoparticle characteristics are presented to later discuss the potential of these nanoparticles to improve current antibiotic treatment characteristics and overcome antimicrobial resistance mechanisms. Moreover, solid lipid nanoparticles also offer new possibilities for other antimicrobial agents that cannot be administrated as free drugs. The advantages and disadvantages of these new formulations are also discussed in this review. Finally, given the progress of the studies carried out to date, future directions are discussed.This work was supported by grants from the University of the Basque Country grant number GIU18/229 and grant number COLAB19/08) and the Industry Department of the Basque Government grant number ELKARTEK2020 KK-2020/00007)

Application of Solid Lipid Nanoparticles to Improve the Efficiency of Anticancer Drugs

Drug delivery systems have opened new avenues to improve the therapeutic effects of already-efficient molecules. Particularly, Solid Lipid Nanoparticles (SLNs) have emerged as promising nanocarriers in cancer therapy. SLNs offer remarkable advantages such as low toxicity, high bioavailability of drugs, versatility of incorporation of hydrophilic and lipophilic drugs, and feasibility of large-scale production. Their molecular structure is crucial to obtain high quality SLN preparations and it is determined by the relationship between the composition and preparation method. Additionally, SLNs allow overcoming several physiological barriers that hinder drug delivery to tumors and are also able to escape multidrug resistance mechanisms, characteristic of cancer cells. Focusing on cell delivery, SLNs can improve drug delivery to target cells by different mechanisms, such as passive mechanisms that take advantage of the tumor microenvironment, active mechanisms by surface modification of SLNs, and codelivery mechanisms. SLNs can incorporate many different drugs and have proven to be effective in different types of tumors (i.e., breast, lung, colon, liver, and brain), corroborating their potential. Finally, it has to be taken into account that there are still some challenges to face in the application of SLNs in anticancer treatments but their possibilities seem to be high.This work was supported by grant GIU (2018) GIU18/229

Antibiotic Resistance in Agricultural Soil and Crops Associated to the Application of Cow Manure-Derived Amendments from Conventional and Organic Livestock Farms

he application of organic amendments to agricultural soil can enhance crop yield, while improving the physicochemical and biological properties of the recipient soils. However, the use of manure-derived amendments as fertilizers entails environmental risks, such as the contamination of soil and crops with antibiotic residues, antibiotic resistance genes (ARGs) and mobile genetic elements (MGEs). In order to delve into these risks, we applied dairy cow manure-derived amendments (slurry, fresh manure, aged manure), obtained from a conventional and an organic farm, to soil. Subsequently, lettuce and wheat plants were grown in the amended soils. After harvest, the abundance of 95 ARGs and MGE-genes from the amended soils and plants were determined by high-throughput qPCR. The structure of soil prokaryotic communities was determined by 16S rRNA amplicon sequencing and qPCR. The absolute abundance of ARGs and MGE-genes differed between treatments (amended vs. unamended), origins of amendment (conventional vs. organic), and types of amendment (slurry vs. fresh manure vs. aged manure). Regarding ARG-absolute abundances in the amendments themselves, higher values were usually found in slurry vs. fresh or aged manure. These abundances were generally higher in soil than in plant samples, and higher in wheat grain than in lettuce plants. Lettuce plants fertilized with conventional amendments showed higher absolute abundances of tetracycline resistance genes, compared to those amended with organic amendments. No single treatment could be identified as the best or worst treatment regarding the risk of antibiotic resistance in soil and plant samples. Within the same treatment, the resistome risk differed between the amendment, the amended soil and, finally, the crop. In other words, according to our data, the resistome risk in manure-amended crops cannot be directly inferred from the analysis of the amendments themselves. We concluded that, depending on the specific question under study, the analysis of the resistome risk should specifically focus on the amendment, the amended soil or the cropThis work has been financially supported by the Basque Government (projects: URAGAN and KONTRAE-Elkartek-KK-2020-00007) and the Spanish Ministry of Science and Innovation (project: PRADA PID2019-110055RB-C21). LJ was the recipient of a predoctoral fellowship from the Department of Economic Development and Infrastructure of the Basque Governmen

Potential Benefits and Risks for Soil Health Derived From the Use of Organic Amendments in Agriculture

The use of organic amendments in agriculture is a common practice due to their potential to increase crop productivity and enhance soil health. Indeed, organic amendments of different origin and composition (e.g., animal slurry, manure, compost, sewage sludge, etc.) can supply valuable nutrients to the soil, as well as increase its organic matter content, with concomitant benefits for soil health. However, the application of organic amendments to agricultural soil entails a variety of risks for environmental and human health. Organic amendments often contain a range of pollutants, including heavy metals, persistent organic pollutants, potential human pathogens, and emerging pollutants. Regarding emerging pollutants, the presence of antibiotic residues, antibiotic-resistant bacteria, and antibiotic-resistance genes in agricultural amendments is currently a matter of much concern, due to the concomitant risks for human health. Similarly, currently, the introduction of microplastics to agricultural soil, via the application of organic amendments (mainly, sewage sludge), is a topic of much relevance, owing to its magnitude and potential adverse effects for environmental health. There is, currently, much interest in the development of efficient strategies to mitigate the risks associated to the application of organic amendments to agricultural soil, while benefiting from their numerous advantages.J.U. was the recipient of a predoctoral fellowship from the Department for Economic Development and Infrastructures of the Basque Governmen

La esencia de los seres vivos

La Biología es la ciencia que trata de los seres vivos. De esta definición se deriva que la persona que profesa la Biología, como parte de unos mínimos principios deontológicos profesionales, tiene la obligación de entender qué es un ser vivo. La comprensión del "ser", esencia o naturaleza, de los seres vivos es un tema de enorme complejidad. No obstante, para el lego en la materia esta cuestión puede parecer trivial, pues todos creemos que no tiene mayor dificultad reconocer un ser vivo de un objeto inanimado

Agricultural Soils Amended with Thermally-Dried Anaerobically-Digested Sewage Sludge Showed Increased Risk of Antibiotic Resistance Dissemination

The application of sewage sludge (SS) to agricultural soil can help meet crop nutrient requirements and enhance soil properties, while reusing an organic by-product. However, SS can be a source of antibiotic resistance genes (ARGs) and mobile genetic elements (MGEs), resulting in an increased risk of antibiotic resistance dissemination. We studied the effect of the application of thermally-dried anaerobically-digested SS on (i) soil physicochemical and microbial properties, and (ii) the relative abundance of 85 ARGs and 10 MGE-genes in soil. Soil samples were taken from a variety of SS-amended agricultural fields differing in three factors: dose of application, dosage of application, and elapsed time after the last application. The relative abundance of both ARGs and MGE-genes was higher in SS-amended soils, compared to non-amended soils, particularly in those with a more recent SS application. Some physicochemical parameters (i.e., cation exchange capacity, copper concentration, phosphorus content) were positively correlated with the relative abundance of ARGs and MGE-genes. Sewage sludge application was the key factor to explain the distribution pattern of ARGs and MGE-genes. The 30 most abundant families within the soil prokaryotic community accounted for 66% of the total variation of ARG and MGE-gene relative abundances. Soil prokaryotic alpha-diversity was negatively correlated with the relative abundance of ARGs and MGE-genes. We concluded that agricultural soils amended with thermally-dried anaerobically-digested sewage sludge showed increased risk of antibiotic resistance dissemination.This work has been financially supported by the Basque Government (projects: URAGAN and KONTRAE-Elkartek-KK2020-00007) and the Spanish Ministry of Science and Innovation (project: PRADA PID2019-110055RB-C21). LJ was the recipient of a predoctoral fellowship from the Department of Economic Development and Infrastructure of the Basque Government

Digital twins for monitoring and predicting the cooking of food products: A case study for a French crêpe

The food industry is shifting toward automated and customized processes, leading to the emergence of smart cooking devices that improve cooking outcomes. However, these devices can be invasive, costly, and only applicable to certain foods. To address these issues, a noninvasive digital twin that monitors food during cooking using a common frying pan with a temperature sensor and a weighing scale is proposed. A case study for a French crêpe is presented, in which we developed a digital twin using a neural network trained on over 400,000 simulation data points. The results show that the digital twin can accurately estimate the properties of the crêpe during cooking in real time with a mean absolute percentage error of less than 5% and predict when it will be cooked according to user criteria. The approach offers significant benefits over existing smart cooking devices, as it can be applied to a wide range of cooking processes. The proposed technology enables food process automation and has potential applications in both home and professional kitchens

Valoración de la condición física funcional, mediante el Senior Fitness Test, de un grupo de personas mayores que realizan un programa de actividad física

El ejercicio físico puede paliar las limitaciones que va imponiendo el proceso de envejecimiento, pero debe ser individualizado a las características de la persona mayor. Por ello es necesaria la valoración de la condición física de ésta. La Senior Fitness Test (SFT) es una batería para tal valoración, y es una de las pocas que está adaptada a los mayores. Por ello nos hemos planteado utilizar esta batería para la valoración de la condición física funcional de un grupo de personas mayores que realizan un programa de actividad física. Participaron en este estudio 22 mujeres y 11 hombres (67,36±4,79 años), los cuales realizaron la SFT que consta de 6 pruebas (Rikli y Jones, 2001). Los resultados indican que los hombres obtienen unas mejores puntuaciones en las pruebas de fuerza y de resistencia aeróbica, sin embargo las mujeres tienen una mayor flexibilidad de brazos. Cuando se calcularon los percentiles de cada prueba según los valores normativos del SFT no existían diferencias entre sexos y ocurre que la muestra evaluada tiene altos niveles de fuerza y una aceptable flexibilidad y agilidad, si bien la capacidad de resistencia es la más limitada. Se hace imprescindible disponer de referencias de la población española