Attract and deter: a dual role for pyrrolizidine alkaloids in plant–insect interactions

Pyrrolizidine alkaloids (PAs) are the major defense compounds of plants in the Senecio genus. Here I will review the effects of PAs in Senecio on the preference and performance of specialist and generalist insect herbivores. Specialist herbivores have evolved adaptation to PAs in their host plant. They can use the alkaloids as cue to find their host plant and often they sequester PAs for their own defense against predators. Generalists, on the other hand, can be deterred by PAs. PAs can also affect survival of generalist herbivores. Usually generalist insects avoid feeding on young Senecio leaves, which contain a high concentration of alkaloids. Structurally related PAs can differ in their effects on insect herbivores, some are more toxic than others. The differences in effects of PAs on specialist and generalists could lead to opposing selection on PAs, which may maintain the genetic diversity in PA concentration and composition in Senecio species

Large expert-curated database for benchmarking document similarity detection in biomedical literature search

Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles. The collected data cover 76% of all unique PubMed Medical Subject Headings descriptors. No systematic biases were observed across different experience levels, research fields or time spent on annotations. More importantly, annotations of the same document pairs contributed by different scientists were highly concordant. We further show that the three representative baseline methods used to generate recommended articles for evaluation (Okapi Best Matching 25, Term Frequency–Inverse Document Frequency and PubMed Related Articles) had similar overall performances. Additionally, we found that these methods each tend to produce distinct collections of recommended articles, suggesting that a hybrid method may be required to completely capture all relevant articles. The established database server located at https://relishdb.ict.griffith.edu.au is freely available for the downloading of annotation data and the blind testing of new methods. We expect that this benchmark will be useful for stimulating the development of new powerful techniques for title and title/abstract-based search engines for relevant articles in biomedical research

Measurements of atmospheric electricity aloft

Measurements of the electrical characteristics of the atmosphere above the surface have been made for over 200 years, from a variety of different platforms, including kites, balloons, rockets and aircraft. From these measurements, a great deal of information about the electrical characteristics of the atmosphere has been gained, assisting our understanding of the global atmospheric electric circuit, thunderstorm electrification and lightning generation mechanisms, discovery of transient luminous events above thunderstorms, and many other electrical phenomena. This paper surveys the history of atmospheric electrical measurements aloft, from the earliest manned balloon ascents to current day observations with free balloons and aircraft. Measurements of atmospheric electrical parameters in a range of meteorological conditions are described, including clear air conditions, polluted conditions, non-thunderstorm clouds, and thunderstorm clouds, spanning a range of atmospheric conditions, from fair weather, to the most electrically active

European Venus Explorer: An in-situ mission to Venus using a balloon platform

International audiencePlanetary balloons have a long history already. A small super-pressure balloon was flown in the atmosphere of Venus in the eighties by the Russian-French VEGA mission. For this mission, CNES developed and fully tested a 9 m diameter super-pressure balloon, but finally replaced it by a smaller one due to mass constraints (when it was decided to send Vega to Halley’s Comet). Furthermore, several kinds of balloons have been proposed for planetary exploration [Blamont, J., in: Maran, S.P. (Ed.), The Astronomy and Astrophysics Encyclopedia. Cambridge University Press, p. 494, 1991]. A Mars balloon has been studied for the Mars-94 Russian-French mission, which was finally cancelled. Mars and Venus balloons have also been studied and ground tested at JPL, and a low atmosphere Venus balloon is presently under development at JAXA (the Japanese Space Agency). Balloons have been identified as a key element in an ongoing Flagship class mission study at NASA, with an assumed launch date between 2020 and 2025.Recently, it was proposed by a group of scientists, under European leadership, to use a balloon to characterize – by in-situ measurements – the evolution, composition and dynamics of the Venus atmosphere. This balloon is part of a mission called EVE (European Venus Explorer), which has been proposed in response to the ESA AO for the first slice of the Cosmic Vision program by a wide international consortium including Europe, Russia, Japan and USA. The EVE architecture consists of one balloon platform floating at an altitude of 50–60 km, one short lived probe provided by Russia, and an orbiter with a polar orbit to relay data from the balloon and probe, and to perform remote sensing science observations. The balloon type preferred for scientific goals is one, which would oscillate in altitude through the cloud deck. To achieve this flight profile, the balloon envelope would contain a phase change fluid. While this proposal was not selected for the first slice of Cosmic Vision missions, it was ranked first among the remaining concepts within the field of solar system science

Molecular cloning and functional characterization of the pig homologue of integrin-associated protein (IAP/CD47)

We report the cloning of cDNA encoding the pig homologue of human integrin-associated protein (IAP or CD47). A pig CD47-specific probe was generated by polymerase chain reaction (PCR) amplification of pig leucocyte cDNA, using primers based on consensus regions among the known sequences of CD47 from different species. Screening of a pig aorta smooth muscle cDNA library identified seven clones, all containing identical sequences. The clones contained an open reading frame (ORF) that encoded an 18 amino acid putative signal peptide, a 122 amino acid sequence consisting of a single extracellular immunoglobulin variable (IgV)-like domain followed by a 147 amino acid region containing five membrane-spanning domains and a 16 amino acid cytoplasmic tail. The amino acid sequence of the clones was 73% homologous to human IAP and therefore it was termed pig IAP or CD47. Reverse transcription–polymerase chain reaction (RT–PCR) showed that pig CD47 was expressed in a wide range of tissues and detected different alternatively spliced forms. The monoclonal antibody (mAb) BRIC 126, anti-human CD47, was shown, by flow cytometry, to stain pig platelets as well as Chinese hamster ovary (CHO) cells transfected with the cDNA encoding pig CD47. Western blot analysis of pig erythocytes and platelets showed a molecular weight (MW) of 43 000–50 000 and of 55 000–65 000, respectively, under non-reducing conditions. Pig CD47 was stably expressed on CHO cells and shown to bind human thrombospondin (TSP). BRIC126 antibody inhibited the binding of platelets and of CD47-transfected cells to human TSP and to pig fibrinogen, whereas no effect was observed on control CHO cells

European Venus Explorer (EVE): an in-situ mission to Venus

The European Venus Explorer (EVE) mission was proposed to the European Space Agency in 2007, as an M-class mission under the Cosmic Vision Programme. Although it has not been chosen in the 2007 selection round for programmatic reasons, the EVE mission may serve as a useful reference point for future missions, so it is described here. It consists of one balloon platform floating at an altitude of 50-60 km, one descent probe provided by Russia, and an orbiter with a polar orbit which will relay data from the balloon and descent probe, and perform science observations. The balloon type preferred for scientific goals is one which oscillates in altitude through the cloud deck. To achieve this flight profile, the balloon envelope contains a phase change fluid, which results in a flight profile which oscillates in height. The nominal balloon lifetime is 7 days-enough for one full circumnavigation of the planet. The descent probe's fall through the atmosphere takes 60 min, followed by 30 min of operation on the surface. The key measurement objectives of EVE are: (1) in situ measurement from the balloon of noble gas abundances and stable isotope ratios, to study the record of the evolution of Venus; (2) in situ balloon-borne measurement of cloud particle and gas composition, and their spatial variation, to understand the complex cloud-level chemistry; (3) in situ measurements of environmental parameters and winds (from tracking of the balloon) for one rotation around the planet, to understand atmospheric dynamics and radiative balance in this crucial region. The portfolio of key measurements is complemented by the Russian descent probe, which enables the investigation of the deep atmosphere and surface. © Springer Science+Business Media B.V. 2008