Linear-scaling DFT+U with full local orbital optimization

We present an approach to the DFT+U method (Density Functional Theory + Hubbard model) within which the computational effort for calculation of ground state energies and forces scales linearly with system size. We employ a formulation of the Hubbard model using nonorthogonal projector functions to define the localized subspaces, and apply it to a local-orbital DFT method including in situ orbital optimization. The resulting approach thus combines linear-scaling and systematic variational convergence. We demonstrate the scaling of the method by applying it to nickel oxide nano-clusters with sizes exceeding 7,000 atoms.Comment: 10 pages, 4 figures. This version (v3) matches that accepted for Physical Review B on 30th January 201

Vanadium dioxide : A Peierls-Mott insulator stable against disorder

Vanadium dioxide undergoes a first order metal-insulator transition at 340 K. In this work, we develop and carry out state of the art linear scaling DFT calculations refined with non-local dynamical mean-field theory. We identify a complex mechanism, a Peierls-assisted orbital selection Mott instability, which is responsible for the insulating M$_1$ phase, and furthermore survives a moderate degree of disorder.Comment: 5 pages, 4 figures. Supplementary material 8 pages, 4 figures. This version (v2) matches that accepted for Physical Review Letters on 16th May 201

Dynamic simulations of potential methane release from East Siberian continental slope sediments

Sediments deposited along continental margins of the Arctic Ocean presumably host large amounts of methane (CH4) in gas hydrates. Here we apply numerical simulations to assess the potential of gas hydrate dissociation and methane release from the East Siberian slope over the next 100 years. Simulations are based on a hypothesized bottom water warming of 3°C, and an assumed starting distribution of gas hydrate. The simulation results show that gas hydrate dissociation in these sediments is relatively slow, and that CH4 fluxes toward the seafloor are limited by low sediment permeability. The latter is true even when sediment fractures are permitted to form in response to overpressure in pore space. With an initial gas hydrate distribution dictated by present-day pressure and temperature conditions, nominally 0.35 Gt of CH4 are released from the East Siberian slope during the first 100 years of the simulation. However, this CH4 discharge becomes significantly smaller (~0.05 Gt) if glacial sea level changes in the Arctic Ocean are considered. This is because a lower sea level during the last glacial maximum (LGM) must result in depleted gas hydrate abundance within the most sensitive region of the modern gas hydrate stability zone. Even if all released CH4 reached the atmosphere, the amount coming from East Siberian slopes would be trivial compared to present-day atmospheric CH4 inputs from other sources

The effect of electrolyte filling method on the performance of dye-sensitized solar cells

The effect of electrolyte filling method on the performance of the dye-sensitized solar cells is investigated with the segmented cell method, a recent technique which is very simple but effective as it can be used to examine all the photovoltaic characteristics. The electrolyte filling techniques compared were single injection, which is typically used in small laboratory cells, and pumping the electrolyte through the cell several times, which is often used for larger cells and modules. Significant photovoltage and photocurrent variations occur with the repeated pumping of the electrolyte in the cell preparation. Transient and charge extraction measurements confirmed that the differences in open circuit voltage were due to the shifts of the TiO2 conduction band and time correlated single photon counting confirmed that the reduction of short circuit current was largely due to reduced electron injection correlated with the increasing conduction band edge in the studied cases. This was interpreted as an effect of molecular filtering by the TiO2 causing an accumulation of electrolyte additives (4-tert-butylpyridine and benzimidazole) near the electrolyte filling hole, the concentration of which increased with repeated pumping of the electrolyte. Interestingly, spatial variations were seen not only in the relative TiO2 conduction band energy but also in the density of trap states. In this contribution it is demonstrated how the changes in the conduction band can be separated from the changes in the density of trap states which is an essential for the correct interpretation of the data.Peer reviewe

A BIOMECHANICAL ANALYSIS OF FRONT VERSUS BACK SQUAT: INJURY IMPLICATIONS

The aim of this study was to examine the differences in trunk and lower limb kinematics between the front and back squat. 2D kinematic data was collected as participants (n = 12) completed three repetitions of both front and back squat exercises at 50 % of their back squat one repetition maximum. Stance width was standardised at 107(±10) % of biacromial breadth. The Wilcoxon signed ranks test was used to examine significant differences in dependent variables between both techniques. Results showed that the back squat exhibited a significantly greater trunk lean than the front squat throughout (p < 0.05) with no differences occurring in knee joint kinematics. The results of this study in conjunction with other squat related literature (Russell et al., 1989) suggest that the back squat gives rise to an increased risk of lower back injury

Effect of molecular filtering and electrolyte composition on the spatial variation in performance of dye solar cells

It is demonstrated that the molecular filtering effect of TiO2 has a significant influence on dye solar cell (DSC) performance. As electrolyte is injected to a DSC, some of the electrolyte components adsorb to the surface TiO2 (here 4-tert-butylpyridine and 1-methyl-benzimidazole) and accumulate near the electrolyte filling hole resulting in varying electrolyte composition and performance across the cell. The spatial performance distribution was investigated with a new method, the segment cell method. Not only is the segmented cell method simple and cheap when compared to the only other method for examining spatial variation (photocurrent mapping), it also has the major advantage of allowing the spatial variation in all other operating parameters to be assessed. Here the molecular filtering effect was to influence the cell performance in case of all the five studied electrolytes causing up to 35% losses in efficiency. Raman spectra indicated that the loss in photocurrent in the electrolyte filling was in correlation with the loss of thiocyanate ligands suggesting that dye regeneration may also be a significant factor in addition to electron injection in some of the cells. There were also shifts in the absorption spectra the photoelectrodes which further supported changes in the thiocyanate ligands. Besides absorption changes, there were additional shifts in the IPCE spectra which may relate to deprotonation of the dye. The efficiency losses were reduced to ∼10% with contemporary electrolyte compositions.Peer reviewe

Interdye Hole Transport Accelerates Recombination in Dye Sensitized Mesoporous Films

Charge recombination between oxidized dyes attached to mesoporous TiO2 and electrons in the TiO2 was studied in inert electrolytes using transient absorption spectroscopy. Simultaneously, hole transport within the dye monolayers was monitored by transient absorption anisotropy. The rate of recombination decreased when hole transport was inhibited selectively, either by decreasing the dye surface coverage or by changing the electrolyte environment. From Monte Carlo simulations of electron and hole diffusion in a particle, modeled as a cubic structure, we identify the conditions under which hole lifetime depends on the hole diffusion coefficient for the case of normal (disorder free) diffusion. From simulations of transient absorption and transient absorption anisotropy, we find that the rate and the dispersive character of hole transport in the dye monolayer observed spectroscopically can be explained by incomplete coverage and disorder in the monolayer. We show that dispersive transport in the dye monolayer combined with inhomogeneity in the TiO2 surface reactivity can contribute to the observed stretched electron-hole recombination dynamics and electron density dependence of hole lifetimes. Our experimental and computational analysis of lateral processes at interfaces can be applied to investigate and optimize charge transport and recombination in solar energy conversion devices using electrodes functionalized with molecular light absorbers and catalysts

The Plasmodium falciparum, Nima-related kinase Pfnek-4: a marker for asexual parasites committed to sexual differentiation

&lt;b&gt;Background&lt;/b&gt; Malaria parasites undergo, in the vertebrate host, a developmental switch from asexual replication to sexual differentiation leading to the formation of gametocytes, the only form able to survive in the mosquito vector. Regulation of the onset of the sexual phase remains largely unknown and represents an important gap in the understanding of the parasite's complex biology. &lt;b&gt;Methods:&lt;/b&gt; The expression and function of the Nima-related kinase Pfnek-4 during the early sexual development of the human malaria parasite Plasmodium falciparum were investigated, using three types of transgenic Plasmodium falciparum 3D7 lines: (i) episomally expressing a Pfnek-4-GFP fusion protein under the control of its cognate pfnek-4 promoter; (ii) episomally expressing negative or positive selectable markers, yeast cytosine deaminase-uridyl phosphoribosyl transferase, or human dihydrofolate reductase, under the control of the pfnek-4 promoter; and (iii) lacking a functional pfnek-4 gene. Parasite transfectants were analysed by fluorescence microscopy and flow cytometry. In vitro growth rate and gametocyte formation were determined by Giemsa-stained blood smears. &lt;b&gt;Results:&lt;/b&gt; The Pfnek-4-GFP protein was found to be expressed in stage II to V gametocytes and, unexpectedly, in a subset of asexual-stage parasites undergoing schizogony. Culture conditions stimulating gametocyte formation resulted in significant increase of this schizont subpopulation. Moreover, sorted asexual parasites expressing the Pfnek-4-GFP protein displayed elevated gametocyte formation when returned to in vitro culture in presence of fresh red blood cells, when compared to GFP- parasites from the same initial population. Negative selection of asexual parasites expressing pfnek-4 showed a marginal reduction in growth rate, whereas positive selection caused a marked reduction in parasitaemia, but was not sufficient to completely abolish proliferation. Pfnek-4- clones are not affected in their asexual growth and produced normal numbers of stage V gametocytes. &lt;b&gt;Conclusions:&lt;/b&gt; The results indicate that Pfnek-4 is not strictly gametocyte-specific, and is expressed in a small subset of asexual parasites displaying high rate conversion to sexual development. Pfnek-4 is not required for erythrocytic schizogony and gametocytogenesis. This is the first study to report the use of a molecular marker for the sorting of sexually-committed schizont stage P. falciparum parasites, which opens the way to molecular characterization of this pre-differentiated subpopulation

Optoelectronic Studies of Methylammonium Lead Iodide Perovskite Solar Cells with Mesoporous TiO2: Separation of Electronic and Chemical Charge Storage, Understanding Two Recombination Lifetimes, and the Evolution of Band Offsets during J-V Hysteresis

Methylammonium lead iodide (MAPI) cells of the design FTO/sTiO2/ mpTiO2/MAPI/Spiro-OMeTAD/Au, where FTO is fluorine-doped tin oxide, sTiO2 indicates solid-TiO2, and mpTiO2 is mesoporous TiO2, are studied using transient photovoltage (TPV), differential capacitance, charge extraction, current interrupt, and chronophotoamperometry. We show that in mpTiO2/MAPI cells there are two kinds of extractable charge stored under operation: a capacitive electronic charge (&sim;0.2 &mu;C/ cm2) and another, larger charge (40 &mu;C/cm2), possibly related to mobile ions. Transient photovoltage decays are strongly double exponential with two time constants that differ by a factor of &sim;5, independent of bias light intensity. The fast decay (&sim;1 &mu;s at 1 sun) is assigned to the predominant charge recombination pathway in the cell. We examine and reject the possibility that the fast decay is due to ferroelectric relaxation or to the bulk photovoltaic effect. Like many MAPI solar cells, the studied cells show significant J&minus;V hysteresis. Capacitance vs open circuit voltage (Voc) data indicate that the hysteresis involves a change in internal potential gradients, likely a shift in band offset at the TiO2/MAPI interface. The TPV results show that the Voc hysteresis is not due to a change in recombination rate constant. Calculation of recombination flux at Voc suggests that the hysteresis is also not due to an increase in charge separation efficiency and that charge generation is not a function of applied bias. We also show that the J&minus;V hysteresis is not a light driven effect but is caused by exposure to electrical bias, light or dark.</div