Component-aware Orchestration of Cloud-based Enterprise Applications, from TOSCA to Docker and Kubernetes

Enterprise IT is currently facing the challenge of coordinating the management of complex, multi-component applications across heterogeneous cloud platforms. Containers and container orchestrators provide a valuable solution to deploy multi-component applications over cloud platforms, by coupling the lifecycle of each application component to that of its hosting container. We hereby propose a solution for going beyond such a coupling, based on the OASIS standard TOSCA and on Docker. We indeed propose a novel approach for deploying multi-component applications on top of existing container orchestrators, which allows to manage each component independently from the container used to run it. We also present prototype tools implementing our approach, and we show how we effectively exploited them to carry out a concrete case study

Explaining the imbalance in δ13C between soil and biomass in fire-prone tropical savannas

Currently, models of terrestrial 13C discrimination indicate that about one quarter of the gross primary productivity (GPP - total carbon fixed as biomass by plants) by the terrestrial biosphere is attributable to tropical savanna/grassland plants that use the C, photosynthetic pathway. However, the fraction of C,-derived biomass in soil organic carbon in savanna systems is much lower than these GPP estimates imply. Determining this imbalance has significant implications for correctly interpreting soil and palaeosol carbon isotope data, and for modelling studies that use variations in the atmospheric δ13CO, record to apportion sources and sinks of carbon. Here, we present preliminary results using hydrogen pyrolysis (HyPy) for quantifying the abundance and identifying the source of pyrogenic carbon (PC) in tropical savannas of North Queensland (Australia). We collected sediment from a series of micro-catchments covering the broadest possible range of C, and C, environments, and compared the abundances and stable isotope compositions of the total organic carbon (TOC) and pyrogenic carbon (PC) fractions. Hydrogen pyrolysis (HyPy) can be used to quantify the production, fate and stable isotope composition of PC produced by vegetation burning. HyPy is pyrolysis (up to ~600°C) under high hydrogen pressures (>10 MPa) in the presence of a catalyst, and when applied to sediments, soils, or organic samples results in the reductive removal of labile organic matter. Therefore, this technique offers great potential to effectively isolate and quantify pyrogenic carbon in a rapid and cost effective manner. Moreover, comparison of the stable carbon isotope composition of PC with bulk carbon has the potential to discern if there is a dominant vegetation source contributing to burning. The results indicate that the δ13C value of PC in the sediments is up 6‰ higher than the 613C value of TOC. There is a larger difference when TOC abundances in the sediments are lowest. This suggests a significant component of C,-derived PC is present in the sediments, even when the proportion of C, biomass in the catchment is relatively low. This in turn, provides evidence for the preferential combustion and transport of C4-derived PC in tropical savannas. Savanna fires preferentially burn the grass understorey rather than large trees, leading to a bias toward the finer C,-derived PC being exported from a fire and accumulated in the sedimentary record while large particles of Crderived PC are more likely to remain at the site of burning. Our preliminary data suggest that application of HyPy in environmental studies enables accurate quantification of an essential component of the terrestrial C cycle. Moreover, the use of HyPy also enables the reliable determination of the stable carbon isotope composition of PC, which will enable deeper understanding of the dynamic role of biomass burning in the global carbon cycle

Association between CSF alpha-synuclein seeding activity and genetic status in Parkinson’s disease and dementia with Lewy bodies

The clinicopathological heterogeneity in Lewy-body diseases (LBD) highlights the need for pathology-driven biomarkers in-vivo. Misfolded alpha-synuclein (α-Syn) is a lead candidate based on its crucial role in disease pathophysiology. Real-time quaking-induced conversion (RT-QuIC) analysis of CSF has recently shown high sensitivity and specificity for the detection of misfolded α-Syn in patients with Parkinson's disease (PD) and dementia with Lewy bodies (DLB). In this study we performed the CSF RT-QuIC assay in 236 PD and 49 DLB patients enriched for different genetic forms with mutations in GBA, parkin, PINK1, DJ1, and LRRK2. A subgroup of 100 PD patients was also analysed longitudinally. We correlated kinetic seeding parameters of RT-QuIC with genetic status and CSF protein levels of molecular pathways linked to α-Syn proteostasis. Overall, 85% of PD and 86% of DLB patients showed positive RT-QuIC α-Syn seeding activity. Seeding profiles were significantly associated with mutation status across the spectrum of genetic LBD. In PD patients, we detected positive α-Syn seeding in 93% of patients carrying severe GBA mutations, in 78% with LRRK2 mutations, in 59% carrying heterozygous mutations in recessive genes, and in none of those with bi-allelic mutations in recessive genes. Among PD patients, those with severe GBA mutations showed the highest seeding activity based on RT-QuIC kinetic parameters and the highest proportion of samples with 4 out of 4 positive replicates. In DLB patients, 100% with GBA mutations showed positive α-Syn seeding compared to 79% of wildtype DLB. Moreover, we found an association between α-Syn seeding activity and reduced CSF levels of proteins linked to α-Syn proteostasis, specifically lysosome-associated membrane glycoprotein 2 and neurosecretory protein VGF. These findings highlight the value of α-Syn seeding activity as an in-vivo marker of Lewy-body pathology and support its use for patient stratification in clinical trials targeting α-Syn

The influence of C3 and C4 vegetation on soil organic matter dynamics in contrasting semi-natural tropical ecosystems

This is a freely-available open access publication. Please cite the published version which is available via the DOI link in this record.Variations in the carbon isotopic composition of soil organic matter (SOM) in bulk and fractionated samples were used to assess the influence of C3 and C4 vegetation on SOM dynamics in semi-natural tropical ecosystems sampled along a precipitation gradient in West Africa. Differential patterns in SOM dynamics in C3/C4 mixed ecosystems occurred at various spatial scales. Relative changes in C/ N ratios between two contrasting SOM fractions were used to evaluate potential site-scale differences in SOM dynamics between C3- and C4-dominated locations. These differences were strongly controlled by soil texture across the precipitation gradient, with a function driven by bulk δ 13C and sand content explaining 0.63 of the observed variability. The variation of δ 13C with soil depth indicated a greater accumulation of C3-derived carbon with increasing precipitation, with this trend also being strongly dependant on soil characteristics. The influence of vegetation thickening on SOM dynamics was also assessed in two adjacent, but structurally contrasting, transitional ecosystems occurring on comparable soils to minimise the confounding effects posed by climatic and edaphic factors. Radiocarbon analyses of sand-size aggregates yielded relatively short mean residence times (τ ) even in deep soil layers, while the most stable SOM fraction associated with silt and clay exhibited shorter τ in the savanna woodland than in the neighbouring forest stand. These results, together with the vertical variation observed in δ 13C values, strongly suggest that both ecosystems are undergoing a rapid transition towards denser closed canopy formations. However, vegetation thickening varied in intensity at each site and exerted contrasting effects on SOM dynamics. This study shows that the interdependence between biotic and abiotic factors ultimately determine whether SOM dynamics of Published by Copernicus Publications on behalf of the European Geosciences Union. 5042 G. Saiz et al.: Influence of C3/C4 on SOM in tropical biomes C3- and C4-derived vegetation are at variance in ecosystems where both vegetation types coexist. The results highlight the far-reaching implications that vegetation thickening may have for the stability of deep SOM.UK National Environment Research CouncilAustralian Institute of Nuclear Science and Engineering (AINSE Ltd

The influence of C3 and C4 vegetation on soil organic matter dynamics in contrasting semi-natural tropical ecosystems

Variations in the carbon isotopic composition of soil organic matter (SOM) in bulk and fractionated samples were used to assess the influence of C3 and C4 vegetation on SOM dynamics in semi-natural tropical ecosystems sampled along a precipitation gradient in West Africa. Differential patterns in SOM dynamics in C3/C4 mixed ecosystems occurred at various spatial scales. Relative changes in C=N ratios between two contrasting SOM fractions were used to evaluate potential site-scale differences in SOM dynamics between C3- and C4-dominated locations. These differences were strongly controlled by soil texture across the precipitation gradient, with a function driven by bulk 13C and sand content explaining 0.63 of the observed variability. The variation of 13C with soil depth indicated a greater accumulation of C3-derived carbon with increasing precipitation, with this trend also being strongly dependant on soil characteristics. The influence of vegetation thickening on SOM dynamics was also assessed in two adjacent, but structurally contrasting, transitional ecosystems occurring on comparable soils to minimise the confounding effects posed by climatic and edaphic factors. Radiocarbon analyses of sand-size aggregates yielded relatively short mean residence times ( ) even in deep soil layers, while the most stable SOM fraction associated with silt and clay exhibited shorter in the savanna woodland than in the neighbouring forest stand. These results, together with the vertical variation observed in 13C values, strongly suggest that both ecosystems are undergoing a rapid transition towards denser closed canopy formations.However, vegetation thickening varied in intensity at each site and exerted contrasting effects on SOM dynamics. Thisstudy shows that the interdependence between biotic and abiotic factors ultimately determine whether SOM dynamics of C3- and C4-derived vegetation are at variance in ecosystems where both vegetation types coexist. The results highlight the far-reaching implications that vegetation thickening may have for the stability of deep SOM. © 2015, Copernicus Publications

Spectroscopic Measurements in the Shock Relaxation Region of a Hypervelocity Mach Reflection

We examine the spatial temperature profile in the non-equilibrium relaxation region behind a stationary shock wave. The normal shock wave is established through a Mach reflection configuration from an opposing wedge arrangement for a hypervelocity air Mach 7.42 freestream. Schlieren images confirm that the shock configuration is steady and the location is repeatable. Emission spectroscopy is used to identify dissociated species and to obtain vibrational temperature measurements using the NO and OH A-X band sequences. Temperature measurements are presented at selected locations behind the normal shock. LIFBASE is used as the simulation spectrum software for OH temperature-fitting, however the need to access higher vibrational and rotational levels for NO leads to the use of an in-house developed algorithm. For NO, results demonstrate the contribution of higher vibrational and rotational levels to the spectra at the conditions of this study. Very good agreement is achieved between the experimentally measured NO vibrational temperatures and calculations performed using a state-resolved, one-dimensional forced harmonic oscillator thermochemical model