Spatial transformations of diffusion tensor magnetic resonance images

The authors address the problem of applying spatial transformations (or “image warps”) to diffusion tensor magnetic resonance images. The orientational information that these images contain must be handled appropriately when they are transformed spatially during image registration. The authors present solutions for global transformations of three-dimensional images up to 12-parameter affine complexity and indicate how their methods can be extended for higher order transformations. Several approaches are presented and tested using synthetic data. One method, the preservation of principal direction algorithm, which takes into account shearing, stretching and rigid rotation, is shown to be the most effective. Additional registration experiments are performed on human brain data obtained from a single subject, whose head was imaged in three different orientations within the scanner. All of the authors' methods improve the consistency between registered and target images over naive warping algorithms

The 3D soft X-ray cluster-AGN cross-correlation function in the ROSAT NEP survey

X-ray surveys facilitate investigations of the environment of AGNs. Deep Chandra observations revealed that the AGNs source surface density rises near clusters of galaxies. The natural extension of these works is the measurement of spatial clustering of AGNs around clusters and the investigation of relative biasing between active galactic nuclei and galaxies near clusters.The major aims of this work are to obtain a measurement of the correlation length of AGNs around clusters and a measure of the averaged clustering properties of a complete sample of AGNs in dense environments. We present the first measurement of the soft X-ray cluster-AGN cross-correlation function in redshift space using the data of the ROSAT-NEP survey. The survey covers 9x9 deg^2 around the North Ecliptic Pole where 442 X-ray sources were detected and almost completely spectroscopically identified. We detected a >3sigma significant clustering signal on scales s<50 h70^-1 Mpc. We performed a classical maximum-likelihood power-law fit to the data and obtained a correlation length s_0=8.7+1.2-0.3 h_70-1 Mpc and a slope gamma=1.7$^+0.2_-0.7 (1sigma errors). This is a strong evidence that AGNs are good tracers of the large scale structure of the Universe. Our data were compared to the results obtained by cross-correlating X-ray clusters and galaxies. We observe, with a large uncertainty, that the bias factor of AGN is similar to that of galaxies.Comment: 4 pages, 2 figure, proceedings of the Conference "At the edge of the Universe", Sintra Portugal, October 2006. To be published on the Astronomical Society of the Pacific Conference Series (ASPCS

The initial conditions of the universe: how much isocurvature is allowed?

We investigate the constraints imposed by the current data on correlated mixtures of adiabatic and non-adiabatic primordial perturbations. We discover subtle flat directions in parameter space that tolerate large (~60%) contributions of non-adiabatic fluctuations. In particular, larger values of the baryon density and a spectral tilt are allowed. The cancellations in the degenerate directions are explored and the role of priors elucidated.Comment: 4 pages, 4 figures. Submitted to PR

Transverse velocities and matter gradient correlations: a new signal and a new challenge to moving-lens analyses

An observer that is moving towards a high-density region sees, on average, a higher matter density and more foreground-emitting sources ahead than behind themself. Consequently, the average abundance and luminosity of objects producing cosmological signals around an in-falling dark matter halo is larger in the direction of the halo's motion. In this Letter, we demonstrate this effect from simulated cosmological maps of the thermal Sunyaev Zel'dovich effect and the cosmic infrared background. We find that, for a wide range of halo masses and redshifts, oriented stacked profiles of these foregrounds show significant, potentially detectable gradients aligned with the transverse velocity of halos. The signal depends on the halo's mass and redshift, as well as the physical properties of the cosmic web surrounding the halos. We show that this signal is sufficiently prominent to be detected in future Cosmic Microwave Background experiments, therefore offering a new window into the study of cosmological structures. We argue that the dipolar morphological structure of this signal, its orientation, as well as its overall large amplitude, constitute a challenge for the detection of the transverse velocity through the study of the moving lens effect for stacked halos.Comment: 8 pages, 4 figures, comments welcom

Constraints on isocurvature models from the WMAP first-year data

We investigate the constraints imposed by the first-year WMAP CMB data extended to higher multipole by data from ACBAR, BOOMERANG, CBI and the VSA and by the LSS data from the 2dF galaxy redshift survey on the possible amplitude of primordial isocurvature modes. A flat universe with CDM and Lambda is assumed, and the baryon, CDM (CI), and neutrino density (NID) and velocity (NIV) isocurvature modes are considered. Constraints on the allowed isocurvature contributions are established from the data for various combinations of the adiabatic mode and one, two, and three isocurvature modes, with intermode cross-correlations allowed. Since baryon and CDM isocurvature are observationally virtually indistinguishable, these modes are not considered separately. We find that when just a single isocurvature mode is added, the present data allows an isocurvature fraction as large as 13+-6, 7+-4, and 13+-7 percent for adiabatic plus the CI, NID, and NIV modes, respectively. When two isocurvature modes plus the adiabatic mode and cross-correlations are allowed, these percentages rise to 47+-16, 34+-12, and 44+-12 for the combinations CI+NID, CI+NIV, and NID+NIV, respectively. Finally, when all three isocurvature modes and cross-correlations are allowed, the admissible isocurvature fraction rises to 57+-9 per cent. The sensitivity of the results to the choice of prior probability distribution is examined.Comment: 20 pages, 24 figures. Submitted to PR

Boomerang returns unexpectedly

Experimental study of the anisotropy in the cosmic microwave background (CMB) is gathering momentum. The eagerly awaited Boomerang results have lived up to expectations. They provide convincing evidence in favor of the standard paradigm: the Universe is close to flat and with primordial fluctuations which are redolent of inflation. Further scrutiny reveals something even more exciting however -- two hints that there may be some unforeseen physical effects. Firstly the primary acoustic peak appears at slightly larger scales than expected. Although this may be explicable through a combination of mundane effects, we suggest it is also prudent to consider the possibility that the Universe might be marginally closed. The other hint is provided by a second peak which appears less prominent than expected. This may indicate one of a number of possibilities, including increased damping length or tilted initial conditions, but also breaking of coherence or features in the initial power spectrum. Further data should test whether the current concordance model needs only to be tweaked, or to be enhanced in some fundamental way.Comment: 11 pages, 3 figures, final version accepted by Ap

Evaluation of different plasmid DNA delivery system for immunization against HER2/neu in a transgenic murine model of mammary carcinoma

Studies of DNA vaccination against HER2/neu showed the effectiveness of immunization protocols in models of transplantable or spontaneous tumors; scarce information, however, has been provided to identify the procedure of DNA administration that more effectively contributes to the activation of immune system against spontaneously arising HER2/neu-positive tumors. We compared the effectiveness of different procedures of DNA vaccine delivery (intradermic injection (ID), gene gun (GG) delivery and intramuscular injection (IM) alone or with electroporation) in a murine transgenic model of mammary carcinoma overexpressing HER2/neu. We highlighted the role of DNA delivery system in the success of DNA vaccination showing that, among the analysed methods, intramuscular injection of the vaccine, particularly when associated to electroporation, elicits a better protection against HER2/neu spontaneous tumor development inducing antibody and cell-mediated immune responsiveness against HER2/neu and a ThI polarization of the immune response

Whole-Brain DTI Assessment of White Matter Damage in Children with Bilateral Cerebral Palsy: Evidence of Involvement beyond the Primary Target of the Anoxic Insult

BACKGROUND AND PURPOSE: Cerebral palsy is frequently associated with both motor and nonmotor symptoms. DTI can characterize the damage at the level of motor tracts but provides less consistent results in nonmotor areas. We used a standardized pipeline of analysis to describe and quantify the pattern of DTI white matter abnormalities of the whole brain in a group of children with chronic bilateral cerebral palsy and periventricular leukomalacia. We also explored potential correlations between DTI and clinical scale metrics. MATERIALS AND METHODS: Twenty-five patients (mean age, 11.8 years) and 25 healthy children (mean age, 11.8 years) were studied at 3T with a 2-mm isotropic DTI sequence. Differences between patients and controls were assessed both voxelwise and in ROIs obtained from an existing DTI atlas. Clinical metrics included the Gross Motor Function Classification System, the Manual Ability Classification System, and intelligence quotient. RESULTS: The voxel-level and ROI-level analyses demonstrated highly significant ( P CONCLUSIONS: We demonstrated the involvement of several motor and nonmotor areas in the chronic damage associated with periventricular leukomalacia and showed new correlations between motor skills and DTI metrics

CMB component separation by parameter estimation

We propose a solution to the CMB component separation problem based on standard parameter estimation techniques. We assume a parametric spectral model for each signal component, and fit the corresponding parameters pixel by pixel in a two-stage process. First we fit for the full parameter set (e.g., component amplitudes and spectral indices) in low-resolution and high signal-to-noise ratio maps using MCMC, obtaining both best-fit values for each parameter, and the associated uncertainty. The goodness-of-fit is evaluated by a chi^2 statistic. Then we fix all non-linear parameters at their low-resolution best-fit values, and solve analytically for high-resolution component amplitude maps. This likelihood approach has many advantages: The fitted model may be chosen freely, and the method is therefore completely general; all assumptions are transparent; no restrictions on spatial variations of foreground properties are imposed; the results may be rigorously monitored by goodness-of-fit tests; and, most importantly, we obtain reliable error estimates on all estimated quantities. We apply the method to simulated Planck and six-year WMAP data based on realistic models, and show that separation at the muK level is indeed possible in these cases. We also outline how the foreground uncertainties may be rigorously propagated through to the CMB power spectrum and cosmological parameters using a Gibbs sampling technique.Comment: 20 pages, 10 figures, submitted to ApJ. For a high-resolution version, see http://www.astro.uio.no/~hke/docs/eriksen_et_al_fgfit.p