Landscape influence on small-scale water temperature variations in a moorland catchment

Acknowledgements Iain Malcolm and staff at Marine Scotland (Pitlochry) are thanked for the provision of data from the AWS. Finally, the two anonymous reviewers are greatly acknowledged for their constructive comments.Peer reviewedPostprin

Modelling landscape controls on dissolved organic carbon sources and fluxes to streams

Acknowledgments We thank the Natural Environment Research Council NERC (project NE/K000268/1) for funding. Iain Malcolm and staff at Marine Scotland (Pitlochry) are also thanked for the provision of data from the AWS as are the Scottish Environmental Protection Agency and British Atmospheric Data Centre for the provision of meteorological data.Peer reviewedPublisher PD

Stream water age distributions controlled by storage dynamics and nonlinear hydrologic connectivity : Modeling with high-resolution isotope data

Peer reviewedPublisher PD

Using geophysical surveys to test tracer-based storage estimates in headwater catchments

Acknowledgements The authors are grateful to Stian Bradford, Chris Gabrielli, and Julie Timms for practical and logistical assistance. The provision of transport by Iain Malcolm and Ross Glover of Marine Scotland Science was greatly appreciated. We also thank the European Research Council ERC (project GA 335910 VEWA) for funding through the VeWa project and the Leverhulme Trust for funding through PLATO (RPG-2014-016).Peer reviewedPostprin

Application of quasi-Monte Carlo methods to PDEs with random coefficients -- an overview and tutorial

This article provides a high-level overview of some recent works on the application of quasi-Monte Carlo (QMC) methods to PDEs with random coefficients. It is based on an in-depth survey of a similar title by the same authors, with an accompanying software package which is also briefly discussed here. Embedded in this article is a step-by-step tutorial of the required analysis for the setting known as the uniform case with first order QMC rules. The aim of this article is to provide an easy entry point for QMC experts wanting to start research in this direction and for PDE analysts and practitioners wanting to tap into contemporary QMC theory and methods.Comment: arXiv admin note: text overlap with arXiv:1606.0661

Laser frequency stabilization to a single ion

A fundamental limit to the stability of a single-ion optical frequency standard is set by quantum noise in the measurement of the internal state of the ion. We discuss how the interrogation sequence and the processing of the atomic resonance signal can be optimized in order to obtain the highest possible stability under realistic experimental conditions. A servo algorithm is presented that stabilizes a laser frequency to the single-ion signal and that eliminates errors due to laser frequency drift. Numerical simulations of the servo characteristics are compared to experimental data from a frequency comparison of two single-ion standards based on a transition at 688 THz in 171Yb+. Experimentally, an instability sigma_y(100 s)=9*10^{-16} is obtained in the frequency difference between both standards.Comment: 15 pages, 5 figures, submitted to J. Phys.

Versatile compact atomic source for high resolution dual atom interferometry

We present a compact $^{87}$Rb atomic source for high precision dual atom interferometers. The source is based on a double-stage magneto-optical trap (MOT) design, consisting of a 2-dimensional (2D)-MOT for efficient loading of a 3D-MOT. The accumulated atoms are precisely launched in a horizontal moving molasses. Our setup generates a high atomic flux ($>10^{10}$ atoms/s) with precise and flexibly tunable atomic trajectories as required for high resolution Sagnac atom interferometry. We characterize the performance of the source with respect to the relevant parameters of the launched atoms, i.e. temperature, absolute velocity and pointing, by utilizing time-of-flight techniques and velocity selective Raman transitions.Comment: uses revtex4, 9 pages, 12 figures, submitted to Phys. Rev.

The effects of read length, quality and quantity on microsatellite discovery and primer development: from Illumina to PacBio

The advent of next-generation sequencing (NGS) technologies has transformed the way microsatellites are isolated for ecological and evolutionary investigations. Recent attempts to employ NGS for microsatellite discovery have used the 454, Illumina, and Ion Torrent platforms, but other methods including single-molecule real-time DNA sequencing (Pacific Biosciences or PacBio) remain viable alternatives. We outline a workflow from sequence quality control to microsatellite marker validation in three plant species using PacBio circular consensus sequencing (CCS). We then evaluate the performance of PacBio CCS in comparison with other NGS platforms for microsatellite isolation, through simulations that focus on variations in read length, read quantity and sequencing error rate. Although quality control of CCS reads reduced microsatellite yield by around 50%, hundreds of microsatellite loci that are expected to have improved conversion efficiency to functional markers were retrieved for each species. The simulations quantitatively validate the advantages of long reads and emphasize the detrimental effects of sequencing errors on NGS-enabled microsatellite development. In view of the continuing improvement in read length on NGS platforms, sequence quality and the corresponding strategies of quality control will become the primary factors to consider for effective microsatellite isolation. Among current options, PacBio CCS may be optimal for rapid, smallscale microsatellite development due to its flexibility in scaling sequencing effort, while platforms such as Illumina MiSeq will provide cost-efficient solutions for multispecies microsatellite projects.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/108219/1/Na2014.pdf85Description of Na2014.pdf : main articl

Measurement of the Fermi Constant by FAST

An initial measurement of the lifetime of the positive muon to a precision of 16 parts per million (ppm) has been performed with the FAST detector at the Paul Scherrer Institute. The result is tau_mu = 2.197083 (32) (15) microsec, where the first error is statistical and the second is systematic. The muon lifetime determines the Fermi constant, G_F = 1.166353 (9) x 10^-5 GeV^-2 (8 ppm).Comment: 15 pages, 6 figure

Using repeat electrical resistivity surveys to assess heterogeneity in soil moisture dynamics under contrasting vegetation types

As the relationship between vegetation and soil moisture is complex and reciprocal, there is a need to understand how spatial patterns in soil moisture influence the distribution of vegetation, and how the structure of vegetation canopies and root networks regulates the partitioning of precipitation. Spatial patterns of soil moisture are often difficult to visualise as usually, soil moisture is measured at point scales, and often difficult to extrapolate. Here, we address the difficulties in collecting large amounts of spatial soil moisture data through a study combining plot- and transect-scale electrical resistivity tomography (ERT) surveys to estimate soil moisture in a 3.2 km 2 upland catchment in the Scottish Highlands. The aim was to assess the spatio-temporal variability in soil moisture under Scots pine forest (Pinus sylvestris) and heather moorland shrubs (Calluna vulgaris); the two dominant vegetation types in the Scottish Highlands. The study focussed on one year of fortnightly ERT surveys. The surveyed resistivity data was inverted and Archie's law was used to calculate volumetric soil moisture by estimating parameters and comparing against field measured data. Results showed that spatial soil moisture patterns were more heterogeneous in the forest site, as were patterns of wetting and drying, which can be linked to vegetation distribution and canopy structure. The heather site showed a less heterogeneous response to wetting and drying, reflecting the more uniform vegetation cover of the shrubs. Comparing soil moisture temporal variability during growing and non-growing seasons revealed further contrasts: under the heather there was little change in soil moisture during the growing season. Greatest changes in the forest were in areas where the trees were concentrated reflecting water uptake and canopy partitioning. Such differences have implications for climate and land use changes; increased forest cover can lead to greater spatial variability, greater growing season temporal variability, and reduced levels of soil moisture, whilst projected decreasing summer precipitation may alter the feedbacks between soil moisture and vegetation water use and increase growing season soil moisture deficits. © 2018 Elsevier B.V