Measuring turbulent large-eddy structures with an ADCP. Part 2. Horizontal velocity variance

This paper considers the degree of accuracy with which observations from an acoustic Doppler current profiler (ADCP) can determine turbulent horizontal velocity variance. As in a previous paper addressing turbulent vertical velocity variance, we use a combination of techniques, deriving response functions from simple theory and from oceanic observations taken with a VADCP (an ADCP with an additional vertical (V) beam) in two different oceanic turbulent flows, Langmuir supercells (LSC) and unstable convection. In the case of LSC, we also determine response by sampling available Large-Eddy Simulations (LES) with specified beam geometry. In contrast with the previous investigation, where a direct measurement of vertical velocity variance was available from the vertical beam of the VADCP, we lack direct measurements of horizontal velocity variances. Thus the observational response reported here for horizontal variance is an estimate, taken as the ratio of first-order to the (assumed more accurate) second-order variance estimates made possible for the first time by the presence of a vertical beam.The theoretical response function is used to illustrate effects on response of horizontal scale, vertical/horizontal anisotropy and possible quasi-coherent phase structure of the large eddies of the turbulent field, and to predict the impact of changing θ, the angle of slant beams from vertical. Observational estimates show that convective turbulence is characterized by near-unity response throughout the water column for both horizontal velocity variances, in agreement with theoretical prediction. For Langmuir supercells, theoretical responses correctly predict qualitative behavior of the LES-derived response functions, specifically overestimation in the lower part of the water column shifting to underestimation toward the surface. LES-derived responses for different values of θ are also in agreement with theory: both approaches suggest that θ = 30° provides more accurate measurement of horizontal turbulent velocity variance than does θ = 20°, the present commercial standard.For all examined cases of unstable convection and most (normal) LSC cases, observationally estimated response functions generally agree with theoretical (and, where available, LES) predictions. However in a few (abnormal) LSC cases, record-averaged second-order variances are clearly underestimated (most obviously when they are actually negative). We have been unable to assign a cause to this underestimation and advise against use of second-order horizontal velocity variances until this unpredictable effect is understood. Normal LSC cases exhibit overestimation of horizontal variance by a maximum factor of 1.5 (observational estimates) to 3 (LES estimates), a degree of accuracy comparable to that associated with microscale-based estimates of turbulent large-eddy quantities. We suggest ways in which the parameters needed for theoretical prediction of the response function for horizontal velocity can be estimated directly from VADCP measurements

Measuring turbulent large-eddy structures with an ADCP. 1. Vertical velocity variance

Two different turbulent flows, Langmuir supercells and unstable convection, have been sampled with a VADCP, an acoustic Doppler current profiler (ADCP) with an additional vertical (V) beam. Direct measurements of the profile of vertical velocity variance provided by the vertical beam are used to calculate observational response functions for algorithms used to derive vertical velocity from the 4 beams of a standard ADCP. A theoretical response function derived for the vertical velocity estimate from a single pair of opposed slant beams illustrates the importance of large-scale quasi-coherent flow structures, as well as effects of different angles of slant beams from vertical. Different large-eddy characteristics for Langmuir supercells and unstable convection yield different theoretical response: however in both cases, the theoretical response agrees qualitatively with that derived from observations. For Langmuir super-cells, there is additional agreement with numerical response functions generated by using the geometry of a VADCP to sample three-dimensional flow fields available from large eddy simulations (LES). The results from all three approaches show that there can be significant error in vertical velocity inferred from slant beam velocities. The error may be either over- or under-estimation, depending upon (usually unknown) features of the large eddies of the turbulent field, such as vertical/horizontal anisotropy, phase coherence, and orientation of horizontally anisotropic turbulent structures relative to the instrument. Given only a standard ADCP, the “best” estimate of vertical velocity variance is not the usual 4-beam estimate, but the larger of the two pair estimates

A modified beam-to-earth transformation to measure short-wavelength internal waves with an acoustic Doppler current profiler

Author Posting. © American Meteorological Society 2005. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Atmospheric and Oceanic Technology 22 (2005): 583–591, doi:10.1175/JTECH1731.1.The algorithm used to transform velocity signals from beam coordinates to earth coordinates in an acoustic Doppler current profiler (ADCP) relies on the assumption that the currents are uniform over the horizontal distance separating the beams. This condition may be violated by (nonlinear) internal waves, which can have wavelengths as small as 100–200 m. In this case, the standard algorithm combines velocities measured at different phases of a wave and produces horizontal velocities that increasingly differ from true velocities with distance from the ADCP. Observations made in Massachusetts Bay show that currents measured with a bottom-mounted upward-looking ADCP during periods when short-wavelength internal waves are present differ significantly from currents measured by point current meters, except very close to the instrument. These periods are flagged with high error velocities by the standard ADCP algorithm. In this paper measurements from the four spatially diverging beams and the backscatter intensity signal are used to calculate the propagation direction and celerity of the internal waves. Once this information is known, a modified beam-to-earth transformation that combines appropriately lagged beam measurements can be used to obtain current estimates in earth coordinates that compare well with pointwise measurements.A. Scotti was partially supported by ONR Grants N00014-03-1-0553 and N00014-01-1- 0172, B. Butman and P. Alexander by the U.S. Geological Survey, and R. Beardsley by the WHOI Smith Chair and ONR Grant N00014-98-1-0210. S. Anderson received partial support from ONR (Grant N00014-97- 1-0158). The Massachusetts Bay Internal Wave Experiment was jointly supported by ONR and USGS

Linking mixing processes and climate variability to the heat content distribution of the Eastern Mediterranean abyss

The heat contained in the ocean (OHC) dominates the Earth’s energy budget and hence represents a fundamental parameter for understanding climate changes. However, paucity of observational data hampers our knowledge on OHC variability, particularly in abyssal areas. Here, we analyze water characteristics, observed during the last three decades in the abyssal Ionian Sea (Eastern Mediterranean), where two competing convective sources of bottom water exist. We find a heat storage of ~1.6 W/m2– twice that assessed globally in the same period – exceptionally well-spread throughout the local abyssal layers. Such an OHC accumulation stems from progressive warming and salinification of the Eastern Mediterranean, producing warmer near-bottom waters. We analyze a new process that involves convectively-generated waters reaching the abyss as well as the triggering of a diapycnal mixing due to rough bathymetry, which brings to a warming and thickening of the bottom layer, also influencing water-column potential vorticity. This may affect the prevailing circulation, altering the local cyclonic/anticyclonic long-term variability and hence precondition future water-masses formation and the redistribution of heat along the entire water-column

Bone Marrow-Derived Cells from Male Donors Do Not Contribute to the Endometrial Side Population of the Recipient

Accumulated evidence demonstrates the existence of bone marrow-derived cells origin in the endometria of women undergoing bone marrow transplantation (BMT). In these reports, cells of a bone marrow (BM) origin are able to differentiate into endometrial cells, although their contribution to endometrial regeneration is not yet clear. We have previously demonstrated the functional relevance of side population (SP) cells as the endogenous source of somatic stem cells (SSC) in the human endometrium. The present work aims to understand the presence and contribution of bone marrow-derived cells to the endometrium and the endometrial SP population of women who received BMT from male donors. Five female recipients with spontaneous or induced menstruations were selected and their endometrium was examined for the contribution of XY donor-derived cells using fluorescent in situ hybridization (FISH), telomapping and SP method investigation. We confirm the presence of XY donor-derived cells in the recipient endometrium ranging from 1.7% to 2.62%. We also identify 0.45–0.85% of the donor-derived cells in the epithelial compartment displaying CD9 marker, and 1.0–1.83% of the Vimentin-positive XY donor-derived cells in the stromal compartment. Although the percentage of endometrial SP cells decreased, possibly being due to chemotherapy applied to these patients, they were not formed by XY donor-derived cells, donor BM cells were not associated with the stem cell (SC) niches assessed by telomapping technique, and engraftment percentages were very low with no correlation between time from transplant and engraftment efficiency, suggesting random terminal differentiation. In conclusion, XY donor-derived cells of a BM origin may be considered a limited exogenous source of transdifferentiated endometrial cells rather than a cyclic source of BM donor-derived stem cells

Radiotherapy exposure directly damages the uterus and causes pregnancy loss

Female cancer survivors are significantly more likely to experience infertility than the general population. It is well established that chemotherapy and radiotherapy can damage the ovary and compromise fertility, yet the ability of cancer treatments to induce uterine damage, and the underlying mechanisms, have been understudied. Here, we show that in mice total-body γ-irradiation (TBI) induced extensive DNA damage and apoptosis in uterine cells. We then transferred healthy donor embryos into ovariectomized adolescent female mice that were previously exposed to TBI to study the impacts of radiotherapy on the uterus independent from effects to ovarian endocrine function. Following TBI, embryo attachment and implantation were unaffected, but fetal resorption was evident at midgestation in 100% of dams, suggesting failed placental development. Consistent with this hypothesis, TBI impaired the decidual response in mice and primary human endometrial stromal cells. TBI also caused uterine artery endothelial dysfunction, likely preventing adequate blood vessel remodeling in early pregnancy. Notably, when pro-apoptotic protein Puma-deficient (Puma-/-) mice were exposed to TBI, apoptosis within the uterus was prevented, and decidualization, vascular function, and pregnancy were restored, identifying PUMA-mediated apoptosis as a key mechanism. Collectively, these data show that TBI damages the uterus and compromises pregnancy success, suggesting that optimal fertility preservation during radiotherapy may require protection of both the ovaries and uterus. In this regard, inhibition of PUMA may represent a potential fertility preservation strategy.</p

Mixed origin of neovascularization of human endometrial grafts in immunodeficient mouse models

peer reviewedBACKGROUND: In vivo mouse models have been developed to study the physiology of normal and pathologic endometrium. Although angiogenesis is known to play an important role in endometrial physiology and pathology, the origin of neovasculature in xenografts remains controversial. The aim of this study was to assess the origin of the neovasculature of endometrial grafts in different mouse models. METHODS: Human proliferative endometrium (n = 19 women) was grafted s.c. in two immunodeficient mouse strains: nude (n = 8) and severely compromised immunodeficient (SCID; n = 20). Mice were also treated with estradiol, progesterone or levonorgestrel. Fluorescence in-situ hybridization using a centromeric human chromosome X probe, immunohistochemistry (von Willebrand factor and collagen IV) and lectin perfusion were performed to identify the origin of the vessels. RESULTS: More than 90% of vessels within xenografts were of human origin 4 weeks after implantation. Some vessels (9.67 +/- 2.01%) were successively stained by human or mouse specific markers, suggesting the presence of chimeric vessels exhibiting a succession of human and murine portions. No difference in staining was observed between the two strains of mouse or different hormone treatments. Furthermore, erythrocytes were found inside human vessels, confirming their functionality. CONCLUSION: This article shows that human endometrial grafts retain their own vessels, which connect to the murine vasculature coming from the host tissue and become functional

Changes in Culture Expanded Human Amniotic Epithelial Cells: Implications for Potential Therapeutic Applications

Human amniotic epithelial cells (hAEC) isolated from term placenta have stem cell-like properties, differentiate into tissue specific cells and reduce lung and liver inflammation and fibrosis following transplantation into disease models established in mice. These features together with their low immunogenicity and immunosuppressive properties make hAEC an attractive source of cells for potential therapeutic applications. However, generation of large cell numbers required for therapies through serial expansion in xenobiotic-free media may be a limiting factor. We investigated if hAEC could be expanded in xenobiotic-free media and if expansion altered their differentiation capacity, immunophenotype, immunosuppressive properties and production of immunomodulatory factors. Serial expansion in xenobiotic-free media was limited with cumulative cell numbers and population doubling times significantly lower than controls maintained in fetal calf serum. The epithelial morphology of primary hAEC changed into mesenchymal-stromal like cells by passage 4–5 (P4–P5) with down regulation of epithelial markers CK7, CD49f, EpCAM and E-cadherin and elevation of mesenchymal-stromal markers CD44, CD105, CD146 and vimentin. The P5 hAEC expanded in xenobiotic-free medium differentiated into osteocyte and alveolar epithelium-like cells, but not chondrocyte, hepatocyte, α- and β-pancreatic-like cells. Expression of HLA Class IA, Class II and co-stimulatory molecules CD80, CD86 and CD40 remained unaltered. The P5 hAEC suppressed mitogen stimulated T cell proliferation, but were less suppressive compared with primary hAEC at higher splenocyte ratios. Primary and P5 hAEC did not secrete the immunosuppressive factors IL-10 and HGF, whereas TGF-β1 and HLA-G were reduced and IL-6 elevated in P5 hAEC. These findings suggest that primary and expanded hAEC may be suitable for different cellular therapeutic applications

Internal waves and turbulence in the Antarctic Circumpolar Current

Author Posting. © American Meteorological Society, 2013. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 43 (2013): 259–282, doi:10.1175/JPO-D-11-0194.1.This study reports on observations of turbulent dissipation and internal wave-scale flow properties in a standing meander of the Antarctic Circumpolar Current (ACC) north of the Kerguelen Plateau. The authors characterize the intensity and spatial distribution of the observed turbulent dissipation and the derived turbulent mixing, and consider underpinning mechanisms in the context of the internal wave field and the processes governing the waves’ generation and evolution. The turbulent dissipation rate and the derived diapycnal diffusivity are highly variable with systematic depth dependence. The dissipation rate is generally enhanced in the upper 1000–1500 m of the water column, and both the dissipation rate and diapycnal diffusivity are enhanced in some places near the seafloor, commonly in regions of rough topography and in the vicinity of strong bottom flows associated with the ACC jets. Turbulent dissipation is high in regions where internal wave energy is high, consistent with the idea that interior dissipation is related to a breaking internal wave field. Elevated turbulence occurs in association with downward-propagating near-inertial waves within 1–2 km of the surface, as well as with upward-propagating, relatively high-frequency waves within 1–2 km of the seafloor. While an interpretation of these near-bottom waves as lee waves generated by ACC jets flowing over small-scale topographic roughness is supported by the qualitative match between the spatial patterns in predicted lee wave radiation and observed near-bottom dissipation, the observed dissipation is found to be only a small percentage of the energy flux predicted by theory. The mismatch suggests an alternative fate to local dissipation for a significant fraction of the radiated energy.SW acknowledges the support of the Grantham Institute for Climate Change, Imperial College London. ACNG acknowledges the support of a NERC Advanced Research Fellowship (Grant NE/C517633/1). KLP acknowledges support from Woods Hole Oceanographic Institution bridge support funds.2013-08-0