2,143 research outputs found

    Hemoglobin genotype has minimal influence on the physiological response of juvenile atlantic cod (Gadus morhua) to environmental challenges

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    Hemoglobin (Hb) polymorphism in cod is associated with temperature‐related differences in biogeographical distribution, and several authors have suggested that functional characteristics of the various hemoglobin isoforms (HbIs) directly influence phenotypic traits such as growth rate. However, no study has directly examined whether Hb genotype translates into physiological differences at the whole animal level. Thus, we generated a family of juvenile Atlantic cod consisting of all three main Hb genotypes (HbI‐1/1, HbI‐2/2, and HbI‐1/2) by crossing a single pair of heterozygous parents, and we compared their metabolic and cortisol responses to an acute thermal challenge (10&deg;C to their critical thermal maximum [CTM] or 22&deg;C, respectively) and tolerance of graded hypoxia. There were no differences in routine metabolism (at 10&deg;C), maximum metabolic rate, metabolic scope, CTM (overall mean 22.9&deg; &plusmn; 0.2&deg;C), or resting and poststress plasma cortisol levels among Hb genotypes. Further, although the HbI‐1/1 fish grew more (by 15%&ndash;30% during the first 9 mo) when reared at 10&deg; &plusmn; 1&deg;C and had a slightly enhanced hypoxia tolerance at 10&deg;C (e.g., the critical O2 levels for HbI‐1/1, HbI‐2/2, and HbI‐1/2 cod were 35.56% &plusmn; 1.24%, and 40.20% &plusmn; 1.99% air saturation, respectively), these results are contradictory to expectations based on HbI functional properties. Thus, our findings (1) do not support previous assumptions that growth rate differences among cod Hb genotypes result from a more efficient use of the oxygen supply&mdash;that is, reduced standard metabolic rates and/or increased metabolic capacity&mdash;and (2) suggest that in juvenile cod, there is no selective advantage to having a particular Hb genotype with regards to the capacity to withstand ecologically relevant environmental challenges.<br /

    The temperature of Britain's coalfields

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    Low temperature heat recovery, cooling and storage schemes, using abandoned flooded mine workings are a viable option for low carbon heating solutions within many abandoned British coalfields. The temperature of mine water is a useful parameter, coupled with depth to water, sustainable yield and recharge potential, to identify suitable locations and calculate the likely performance of heat recovery schemes. This paper aims to provide the first mapping and synthesis of the temperature of Britain's coalfields to support this emerging technology. Using the best available evidence, a median geothermal gradient of 24.1 °C/km was calculated for the British coalfields. However, geothermal gradients between separate coalfields can vary from 17.3 to 34.3 °C/km. The North East, Cumbria and Yorkshire coalfields all have mean geothermal gradients generally >30 °C/km, whilst geothermal gradients of generally <23 °C/km are measured in the Warwickshire, South Wales, Staffordshire, Douglas and Fife coalfields. Active dewatering schemes are shown to locally increase the apparent measured geothermal gradient by ingress and mixing of deeper water into the pumping shafts. This baseline spatial mapping and synthesis of coalfield temperatures offers significant benefit to those planning, designing and regulating heat recovery and storage in Britain's abandoned coalfields

    Chromosome position effects on gene expression in Escherichia coli K-12

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    In eukaryotes, the location of a gene on the chromosome is known to affect its expression, but such position effects are poorly understood in bacteria. Here, using Escherichia coli K-12, we demonstrate that expression of a reporter gene cassette, comprised of the model E. coli lac promoter driving expression of gfp, varies by ∌300-fold depending on its precise position on the chromosome. At some positions, expression was more than 3-fold higher than at the natural lac promoter locus, whereas at several other locations, the reporter cassette was completely silenced: effectively overriding local lac promoter control. These effects were not due to differences in gene copy number, caused by partially replicated genomes. Rather, the differences in gene expression occur predominantly at the level of transcription and are mediated by several different features that are involved in chromosome organization. Taken together, our findings identify a tier of gene regulation above local promoter control and highlight the importance of chromosome position effects on gene expression profiles in bacteria

    Altitudinal Shifts of the Native and Introduced Flora of California in the Context of 20th-Century Warming

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    Aim: The differential responses of plant species to climate change are of great interest and grave concern for scientists and conservationists. One underexploited resource for better understanding these changes are the records held by herbaria. Using these records to assess the responses of different groups of species across the entire flora of California, we sought to quantify the magnitude of species elevational shifts, to measure differences in shifts among functional groups and between native and introduced species, and to evaluate whether these shifts were related to the conservation of thermal niches. Location: California. Methods: To characterize these shifts in California, we used 681,609 georeferenced herbarium records to estimate mean shifts in elevational and climatic space of 4426 plant taxa.We developed and employed a statistical method to robustly analyse the data represented in these records. Results: We found that 15% of all taxa in California have ranges that have shifted upward over the past century. There are significant differences between range shifts of taxa with different naturalization statuses: 12% of endemic taxa show significant upward range shifts, while a greater proportion (27%) of introduced taxa have shifted upward.We found significant differences between the proportion of significant range shifts across taxa with different seed sizes, but did not find evidence for differences in shift based on life-form (annual versus perennial, herbaceous versus woody). Main conclusions: Our analyses suggest that introduced species have disproportionately expanded their ranges upward in elevation over the past century when compared with native species.While these shifts in introduced species may not be exclusively driven by climate, they highlight the importance of considering the interacting factors of climate-driven range shifts and invasion to understand how floras are responding in the face of anthropogenic change

    Full regularity for a C*-algebra of the Canonical Commutation Relations. (Erratum added)

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    The Weyl algebra,- the usual C*-algebra employed to model the canonical commutation relations (CCRs), has a well-known defect in that it has a large number of representations which are not regular and these cannot model physical fields. Here, we construct explicitly a C*-algebra which can reproduce the CCRs of a countably dimensional symplectic space (S,B) and such that its representation set is exactly the full set of regular representations of the CCRs. This construction uses Blackadar's version of infinite tensor products of nonunital C*-algebras, and it produces a "host algebra" (i.e. a generalised group algebra, explained below) for the \sigma-representation theory of the abelian group S where \sigma(.,.):=e^{iB(.,.)/2}. As an easy application, it then follows that for every regular representation of the Weyl algebra of (S,B) on a separable Hilbert space, there is a direct integral decomposition of it into irreducible regular representations (a known result). An Erratum for this paper is added at the end.Comment: An erratum was added to the original pape

    RNA polymerase supply and flux through the lac operon in Escherichia coli.

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    Chromatin immunoprecipitation, followed by quantification of immunoprecipitated DNA, can be used to measure RNA polymerase binding to any DNA segment in Escherichia coli By calibrating measurements against the signal from a single RNA polymerase bound at a single promoter, we can calculate both promoter occupancy levels and the flux of transcribing RNA polymerase through transcription units. Here, we have applied the methodology to the E. coli lactose operon promoter. We confirm that promoter occupancy is limited by recruitment and that the supply of RNA polymerase to the lactose operon promoter depends on its location in the E. coli chromosome. Measurements of RNA polymerase binding to DNA segments within the lactose operon show that flux of RNA polymerase through the operon is low, with, on average, over 18 s elapsing between the passage of transcribing polymerases. Similar low levels of flux were found when semi-synthetic promoters were used to drive transcript initiation, even when the promoter elements were changed to ensure full occupancy of the promoter by RNA polymerase.This article is part of the themed issue 'The new bacteriology'

    The meanings of consent to the donation of cord blood stem cells: perspectives from an interview-based study of a public cord blood bank in England

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    This paper explores the perspectives of women who have agreed that their umbilical cord blood may be collected for a public ‘cord blood bank’, for use in transplant medicine or research. Drawing on interview data from 27 mothers who agreed to the collection and use of their umbilical cord blood, these choices and the informed consent process are explored. It is shown that the needs of sick children requiring transplants are prominent in narrative accounts of cord blood banking, together with high expectations for future applications of stem cells. Given this dynamic, a concern arises that the complex and multiple uses of tissues and related data might be oversimplified in the consent process. In conclusion, the positive finding of a commitment to mutuality in cord blood banking among these women is underlined, and its implications for the wider debate on cord blood banking are discussed
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