Application of Bayesian graphs to SN Ia data analysis and compression

Bayesian graphical models are an efficient tool for modelling complex data and derive self-consistent expressions of the posterior distribution of model parameters. We apply Bayesian graphs to perform statistical analyses of Type Ia supernova (SN Ia) luminosity distance measurements from the joint light-curve analysis (JLA) data set. In contrast to the $\chi^2$ approach used in previous studies, the Bayesian inference allows us to fully account for the standard-candle parameter dependence of the data covariance matrix. Comparing with $\chi^2$ analysis results, we find a systematic offset of the marginal model parameter bounds. We demonstrate that the bias is statistically significant in the case of the SN Ia standardization parameters with a maximal 6 $\sigma$ shift of the SN light-curve colour correction. In addition, we find that the evidence for a host galaxy correction is now only 2.4 $\sigma$. Systematic offsets on the cosmological parameters remain small, but may increase by combining constraints from complementary cosmological probes. The bias of the $\chi^2$ analysis is due to neglecting the parameter-dependent log-determinant of the data covariance, which gives more statistical weight to larger values of the standardization parameters. We find a similar effect on compressed distance modulus data. To this end, we implement a fully consistent compression method of the JLA data set that uses a Gaussian approximation of the posterior distribution for fast generation of compressed data. Overall, the results of our analysis emphasize the need for a fully consistent Bayesian statistical approach in the analysis of future large SN Ia data sets.Comment: 14 pages, 13 figures, 5 tables. Submitted to MNRAS. Compression utility available at https://gitlab.com/congma/libsncompress/ and example cosmology code with machine-readable version of Tables A1 & A2 at https://gitlab.com/congma/sn-bayesian-model-example/ v2: corrected typo in author's name. v3: 15 pages, incl. corrections, matches the accepted versio

Key inflammatory pathway activations in the MCI stage of Alzheimer's disease

OBJECTIVE: To determine the key inflammatory pathways that are activated in the peripheral and CNS compartments at the mild cognitive impairment (MCI) stage of Alzheimer's disease (AD). METHODS: A cross-sectional study of patients with clinical and biomarker characteristics consistent with MCI-AD in a discovery cohort, with replication in the Alzheimer's Disease Neuroimaging Initiative (ADNI) cohort. Inflammatory analytes were measured in the CSF and plasma with the same validated multiplex analyte platform in both cohorts and correlated with AD biomarkers (CSF Aβ42, total tau (t-tau), phosphorylated tau (p-tau) to identify key inflammatory pathway activations. The pathways were additionally validated by evaluating genes related to all analytes in coexpression networks of brain tissue transcriptome from an autopsy confirmed AD cohort to interrogate if the same pathway activations were conserved in the brain tissue gene modules. RESULTS: Analytes of the tumor necrosis factor (TNF) signaling pathway (KEGG ID:4668) in the CSF and plasma best correlated with CSF t-tau and p-tau levels, and analytes of the complement and coagulation pathway (KEGG ID:4610) best correlated with CSF Aβ42 levels. The top inflammatory signaling pathways of significance were conserved in the peripheral and the CNS compartments. They were also confirmed to be enriched in AD brain transcriptome gene clusters. INTERPRETATION: A cell-protective rather than a proinflammatory analyte profile predominates in the CSF in relation to neurodegeneration markers among MCI-AD patients. Analytes from the TNF signaling and the complement and coagulation pathways are relevant in evaluating disease severity at the MCI stage of AD

Flavin mononucleotide: the coenzyme of reduced diphosphopyridine nucleotide dehydrogenase

This article does not have an abstract

Determining how polymer-bubble interactions impact algal separation using the novel "Posi"-dissolved air flotation process

The novel dissolved air flotation (DAF) process that uses hydrophobically-modified polymers (HMPs) to generate positively charged bubbles (PosiDAF) has been shown to separate negatively charged algal cells without the need for coagulation-flocculation. Previous research has been limited to HMPs of poly(N,N-dimethylaminoethyl methacrylate) (PDMAEMA) and, while they were effective at bench-scale, performance at pilot-scale was better using commercial poly(N,N-diallyl-N,N-dimethylammonium chloride) (PDADMAC). Hence, the aim of this research was to compare the effectiveness of PDADMAC modified with aliphatic and aromatic moieties in comparison to previously tested PDMAEMA HMPs in respect to algal cell separation and minimisation of effluent polymer concentration, as well as defining the underlying polymer-bubble interaction mechanisms. Polymer-bubble adhesion properties were measured using atomic force microscopy (AFM) while polymer concentration was monitored via zeta potential and, where possible, assays using fluorescence spectroscopy. Both PDADMAC functionalised with a fluorinated aromatic group (PDADMAC-BCF) and PDMAEMA modified with 1-bromodecane respectively, gave effective cell separation, while the treated effluent zeta potential values at maximum cell removal were lower than the other polymers trialled. The effluent polymer concentration when using PDADMAC-BCF was four times lower in comparison to another aromatically modified PDADMAC polymer. AFM studies indicated that, in contrast to the PDMAEMA-based polymers, the PDADMAC-based polymers did not adsorb closely to the bubble surface. The different polymer-bubble interactions indicate that separation mechanisms will also vary, potentially leading to differences in process effectiveness when explored at pilot scale

Noninvasive vagus nerve stimulation alters neural response and physiological autonomic tone to noxious thermal challenge.

The mechanisms by which noninvasive vagal nerve stimulation (nVNS) affect central and peripheral neural circuits that subserve pain and autonomic physiology are not clear, and thus remain an area of intense investigation. Effects of nVNS vs sham stimulation on subject responses to five noxious thermal stimuli (applied to left lower extremity), were measured in 30 healthy subjects (n = 15 sham and n = 15 nVNS), with fMRI and physiological galvanic skin response (GSR). With repeated noxious thermal stimuli a group × time analysis showed a significantly (p < .001) decreased response with nVNS in bilateral primary and secondary somatosensory cortices (SI and SII), left dorsoposterior insular cortex, bilateral paracentral lobule, bilateral medial dorsal thalamus, right anterior cingulate cortex, and right orbitofrontal cortex. A group × time × GSR analysis showed a significantly decreased response in the nVNS group (p < .0005) bilaterally in SI, lower and mid medullary brainstem, and inferior occipital cortex. Finally, nVNS treatment showed decreased activity in pronociceptive brainstem nuclei (e.g. the reticular nucleus and rostral ventromedial medulla) and key autonomic integration nuclei (e.g. the rostroventrolateral medulla, nucleus ambiguous, and dorsal motor nucleus of the vagus nerve). In aggregate, noninvasive vagal nerve stimulation reduced the physiological response to noxious thermal stimuli and impacted neural circuits important for pain processing and autonomic output

A Spectroscopic and Photometric Study of the Metal-Poor, Pulsating, Post-AGB Binary HD 46703

The metal-poor post-AGB star HD 46703 is shown to be a single-line spectroscopic binary with a period of 600 days, a high velocity of -94 km/s, and an orbital eccentricity of 0.3. Light curve studies show that it also pulsates with a period of 29 days. High-resolution, high signal-to-noise spectra were used for a new abundance study. The atmospheric model determined is T(eff) = 6250 K, log(g) = 1.0, V(t) = 3.0 km/s, and a metal abundance of [M/H] = -1.5. A low carbon abundance and lack of s-process element enhancement indicate that the star has not experienced third dredge-up on the AGB. The sulfur and zinc abundances are high compared with iron, and the chemical abundances show a clear anti-correlation with condensation temperature. The abundance depletion pattern is similar to that seen in other post-AGB binaries, and, like them, is attributed to the chemical fractionation of refractory elements onto dust stored in a circumbinary disk and the re-accretion of volatiles in the stellar atmosphere. The infrared excess is small but the excess energy distribution is very similar to what can expected from a disk. HD 46703 joins the growing list of depleted, post-AGB stars which are likely surrounded by a dusty and stable circumbinary disk.Comment: Machine readable files not include

Is clopidogrel better than aspirin following breakthrough strokes while on aspirin? A retrospective cohort study.

ObjectiveThere is insufficient evidence on which to base a recommendation for optimal antiplatelet therapy following a stroke while on aspirin. The objective was to compare clopidogrel initiation vs aspirin reinitiation for vascular risk reduction among patients with ischaemic stroke on aspirin at the time of their index stroke.DesignRetrospective.SettingWe conducted a nationwide cohort study by retrieving all hospitalised patients (≥18 years) with a primary diagnosis of ischaemic stroke between 2003 and 2009 from Taiwan National Health Insurance Research Database.ParticipantsAmong 3862 patients receiving aspirin before the index ischaemic stroke and receiving either aspirin or clopidogrel after index stroke during follow-up period, 1623 were excluded due to a medication possession ratio <80%. Also, 355 were excluded due to history of atrial fibrillation, valvular heart disease or coagulopathy. Therefore, 1884 patients were included in our final analysis.InterventionsPatients were categorised into two groups based on whether clopidogrel or aspirin was prescribed during the follow-up period. Follow-up was from time of the index stroke to admission for recurrent stroke or myocardial infarction, death or the end of 2010.Primary and secondary outcome measuresThe primary end point was hospitalisation due to a new-onset major adverse cardiovascular event (MACE: composite of any stroke or myocardial infarction). The leading secondary end point was any recurrent stroke.ResultsCompared to aspirin, clopidogrel was associated with a lower occurrence of future MACE (HR=0.54, 95% CI 0.43 to 0.68, p<0.001, number needed to treat: 8) and recurrent stroke (HR=0.54, 95% CI 0.42 to 0.69, p<0.001, number needed to treat: 9) after adjustment of relevant covariates.ConclusionsAmong patients with an ischaemic stroke while taking aspirin, clopidogrel initiation was associated with fewer recurrent vascular events than aspirin reinitiation

An electron transport particle from yeast: purification and properties

This article does not have an abstract

Differential Effects of Leptin on the Invasive Potential of Androgen-Dependent and -Independent Prostate Carcinoma Cells

Obesity has been linked with an increased risk of prostate cancer. The formation of toxic free oxygen radicals has been implicated in obesity mediated disease processes. Leptin is one of the major cytokines produced by adipocytes and controls body weight homeostasis through food intake and energy expenditure. The rationale of the study was to determine the impact of leptin on the metastatic potential of androgen-sensitive (LNCaP) cells as well as androgen-insensitive (PC-3 and DU-145) cells. At a concentration of 200 nm, LNCaP cells showed a significant increase (20% above control; P < .0001) in cellular proliferation without any effect on androgen-insensitive cells. Furthermore, exposure to leptin caused a significant (P < .01 to P < .0001) dose-dependent decrease in migration and invasion of PC3 and Du-145 prostate carcinoma cell lines. At the molecular level, exposure of androgen-independent prostate cancer cells to leptin stimulates the phosphorylation of MAPK at early time point as well as the transcription factor STAT3, suggesting the activation of the intracellular signaling cascade upon leptin binding to its cognate receptor. Taken together, these results suggest that leptin mediates the invasive potential of prostate carcinoma cells, and that this effect is dependent on their androgen sensitivity

The role of algal organic matter in the separation of algae and cyanobacteria using the novel “Posi” - Dissolved air flotation process

Algae and cyanobacteria frequently require separation from liquid media in both water treatment and algae culturing for biotechnology applications. The effectiveness of cell separation using a novel dissolved air flotation process that incorporates positively charged bubbles (PosiDAF) has recently been of interest but has been shown to be dependent on the algae or cyanobacteria species tested. Previously, it was hypothesised that algal organic matter (AOM) could be impacting the separation efficiency. Hence, this study investigates the influence of AOM on cell separation using PosiDAF, in which bubbles are modified using a commercially available cationic polyelectrolyte poly(N, N-diallyl-N,N-dimethylammonium chloride) (PDADMAC). The separation of Chlorella vulgaris CS-42/7, Mychonastes homosphaera CS-556/01 and two strains of Microcystis aeruginosa (CS-564/01 and CS-555/1), all of which have similar cell morphology but different AOM character, was investigated. By testing the cell separation in the presence and absence of AOM, it was determined that AOM enhanced cell separation for all the strains but to different extents depending on the quantity and composition of carbohydrates and proteins in the AOM. By extracting AOM from the strain for which optimal separation was observed and adding it to the others, cell separation improved from 90%. This was attributed to elevated levels of acidic carbohydrates as well as glycoprotein-carbohydrate conjugations, which in turn were related to the nature and quantity of proteins and carbohydrates present in the AOM. Therefore, it was concluded that process optimisation requires an in-depth understanding of the AOM and its components. If culturing algae for biotechnology applications, this indicates that strain selection is not only important with respect to high value product content, but also for cell separation