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Continued evaluation of potential for geologic storage of carbon dioxide in the southeastern United States
Southern States Energy Board
Duke Energy
Santee Cooper Power
Southern CompanyBureau of Economic Geolog
Stress response function of a two-dimensional ordered packing of frictional beads
We study the stress profile of an ordered two-dimensional packing of beads in
response to the application of a vertical overload localized at its top
surface. Disorder is introduced through the Coulombic friction between the
grains which gives some indeterminacy and allows the choice of one constrained
random number per grain in the calculation of the contact forces. The so-called
`multi-agent' technique we use, lets us deal with systems as large as
grains. We show that the average response profile has a double
peaked structure. At large depth , the position of these peaks grows with
, while their widths scales like . and are analogous to
`propagation' and `diffusion' coefficients. Their values depend on that of the
friction coefficient . At small , we get and , with , which means that the peaks get
closer and wider as the disorder gets larger. This behavior is qualitatively
what was predicted in a model where a stochastic relation between the stress
components is assumed.Comment: 7 pages, 7 figures, accepted version to Europhys. Let
Validation of the GATE Monte Carlo simulation platform for modelling a CsI(Tl) scintillation camera dedicated to small animal imaging
Monte Carlo simulations are increasingly used in scintigraphic imaging to
model imaging systems and to develop and assess tomographic reconstruction
algorithms and correction methods for improved image quantitation. GATE (GEANT
4 Application for Tomographic Emission) is a new Monte Carlo simulation
platform based on GEANT4 dedicated to nuclear imaging applications. This paper
describes the GATE simulation of a prototype of scintillation camera dedicated
to small animal imaging and consisting of a CsI(Tl) crystal array coupled to a
position sensitive photomultiplier tube. The relevance of GATE to model the
camera prototype was assessed by comparing simulated 99mTc point spread
functions, energy spectra, sensitivities, scatter fractions and image of a
capillary phantom with the corresponding experimental measurements. Results
showed an excellent agreement between simulated and experimental data:
experimental spatial resolutions were predicted with an error less than 100 mu
m. The difference between experimental and simulated system sensitivities for
different source-to-collimator distances was within 2%. Simulated and
experimental scatter fractions in a [98-182 keV] energy window differed by less
than 2% for sources located in water. Simulated and experimental energy spectra
agreed very well between 40 and 180 keV. These results demonstrate the ability
and flexibility of GATE for simulating original detector designs. The main
weakness of GATE concerns the long computation time it requires: this issue is
currently under investigation by the GEANT4 and the GATE collaboration
Innovative in silico approaches to address avian flu using grid technology
The recent years have seen the emergence of diseases which have spread very
quickly all around the world either through human travels like SARS or animal
migration like avian flu. Among the biggest challenges raised by infectious
emerging diseases, one is related to the constant mutation of the viruses which
turns them into continuously moving targets for drug and vaccine discovery.
Another challenge is related to the early detection and surveillance of the
diseases as new cases can appear just anywhere due to the globalization of
exchanges and the circulation of people and animals around the earth, as
recently demonstrated by the avian flu epidemics. For 3 years now, a
collaboration of teams in Europe and Asia has been exploring some innovative in
silico approaches to better tackle avian flu taking advantage of the very large
computing resources available on international grid infrastructures. Grids were
used to study the impact of mutations on the effectiveness of existing drugs
against H5N1 and to find potentially new leads active on mutated strains. Grids
allow also the integration of distributed data in a completely secured way. The
paper presents how we are currently exploring how to integrate the existing
data sources towards a global surveillance network for molecular epidemiology.Comment: 7 pages, submitted to Infectious Disorders - Drug Target
Diversification of EPR signatures in site directed spin labeling using a beta-phosphorylated nitroxide
Site Directed Spin Labeling (SDSL) combined with EPR spectroscopy is a very powerful approach to investigate structural transitions in proteins in particular flexible or even disordered ones. Conventional spin labels are based on nitroxide derivatives leading to classical 3-line spectra whose spectral shapes are indicative of the environment of the labels and thus constitute good reporters of structural modifications. However, the similarity of these spectral shapes precludes probing two regions of a protein or two partner proteins simultaneously. To overcome the limitation due to the weak diversity of nitroxide label EPR spectral shapes, we designed a new spin label based on a ÎČ-phosphorylated nitroxide giving 6-line spectra. This paper describes the synthesis of this new spin label, its grafting at four different positions of a model disordered protein able to undergo an induced α-helical folding and its characterization by EPR spectroscopy. For comparative purposes, a classical nitroxide has been grafted at the same positions of the model protein. The ability of the new label to report on structural transitions was evaluated by analyzing the spectral shape modifications induced either by the presence of a secondary structure stabilizer (trifluoroethanol) or by the presence of a partner protein. Taken together the results demonstrate that the new phosphorylated label gives a very distinguishable signature which is able to report from subtle to larger structural transitions, as efficiently as the classical spin label. As a complementary approach, molecular dynamics (MD) calculations were performed to gain further insights into the binding process between the labeled NTAIL and PXD. MD calculations revealed that the new label does not disturb the interaction between the two partner proteins and reinforced the conclusion on its ability to probe different local environments in a protein. Taken together this study represents an important step forward in the extension of the panoply of SDSL-EPR approaches. This journal is © 2014 the Owner Societies
An oil pipeline design problem
Copyright @ 2003 INFORMSWe consider a given set of offshore platforms and onshore wells producing known (or estimated) amounts of oil to be connected to a port. Connections may take place directly between platforms, well sites, and the port, or may go through connection points at given locations. The configuration of the network and sizes of pipes used must be chosen to minimize construction costs. This problem is expressed as a mixed-integer program, and solved both heuristically by Tabu Search and Variable Neighborhood Search methods and exactly by a branch-and-bound method. Two new types of valid inequalities are introduced. Tests are made with data from the South Gabon oil field and randomly generated problems.The work of the first author was supported by NSERC grant #OGP205041. The work of the second author was supported by FCAR (Fonds pour la Formation des Chercheurs et lâAide Ă la Recherche) grant #95-ER-1048, and NSERC grant #GP0105574
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