From Forest To Tundra: Historical Biogeography, Floristic Diversity And Nucleotide Variation In Balsam Poplar

Thesis (Ph.D.) University of Alaska Fairbanks, 2010The North America boreal forest extends across more than 10� of latitude from central Labrador to interior Alaska. Periods of major climate fluctuations, including glacial and interglacial cycles, drove major migrations in the Quaternary history of the boreal forest. Beringia, the unglaciated region between the Lena and Mackenzie rivers, is recognized as an important refugium for arctic plants during the last ice age, but its role for boreal trees remains controversial. The paleobotanical record indicates Populus balsamifera (balsam poplar) survived within Beringia during the last glacial. My research employed an interdisciplinary approach, combining techniques in the fields of ecology, evolution and population genetics, to reconstruct the late Quaternary migration history of balsam poplar and to describe and classify balsam poplar plant communities in the Alaskan Arctic. Chapter 1 describes the motivation for the research. Chapter 2 addresses whether a demographically-detectable population of balsam poplar was present within Beringia during the most recent ice age. I found that patterns of variation in chloroplast DNA are most consistent with the presence of a single population of balsam poplar south of the continental ice sheets through the Late Quaternary. Chapter 3 is an analysis of floristic diversity in balsam poplar communities across the Arctic Slope, Interior Alaska and the Yukon Territory and asks whether one balsam poplar-associated plant community spans the arctic and boreal regions, or if these communities differ. I found that arctic communities are dominated by arctic-alpine taxa, whereas boreal communities are dominated by boreal taxa. A strong linkage between climate and the occurrence of balsam poplar also was observed on the Arctic Slope. Chapter 4 is a study of nucleotide diversity in three nuclear loci across the range of balsam poplar. This was the first study to document geographic structure in genetic variation within the species. It also showed that diversity in three North American poplars (P. balsamifera, P. deltoides and P. trichocarpa) was substantially less than that of three Eurasian poplars (P. alba, P. nigra and P. tremula). Chapter 5 summarizes the research and points toward future research directions

Infrastructure Development Accelerates Range Expansion of Trembling Aspen (Populus tremuloides, Salicaceae) into the Arctic

Interacting forces of climate change and increased human activity in the Arctic are driving rapid changes in ecosystem structure, function, and biodiversity. One such change is the northern range expansion of tree species. We present the first account of the boreal tree species trembling aspen (Populus tremuloides, Salicaceae) growing beyond the latitudinal treeline in the northern foothills of the Brooks Range, Alaska. The four trembling aspen stands described in this paper are located on abandoned gravel roads or pads created for construction purposes. We hypothesize that gravel pads create islands of substrate suitable for tree growth within the Arctic by providing greater rooting depth, well-drained microsites, an extended growing season, and acid-buffering capacity. Further, traffic along the south-to-north oriented Dalton Highway from the boreal forest in Interior Alaska to the Arctic may aid seed dispersal across the topographic barrier of the Brooks Range. Therefore, increased development in the Arctic will likely accelerate the establishment of trees as climate becomes more favorable for tree growth. Tree colonization associated with infrastructure development would contrast sharply with prior conceptual models of gradual treeline advance following disturbance. Dans l’Arctique, les forces interactives du changement climatique et de l’activité humaine accrue donnent lieu à des changements rapides dans la structure, la fonction et la biodiversité de l’écosystème. Un de ces changements prend la forme de l’expansion des espèces d’arbres dans l’aire de répartition septentrionale. Nous présentons le premier compte rendu au sujet de l’espèce boréale du peuplier faux-tremble (Populus tremuloides, Salicaceae) qui pousse au-delà de la limite forestière latitu­dinale dans les piémonts du nord de la chaîne de Brooks, en Alaska. Les quatre peuplements de peupliers faux-trembles décrits dans ce texte se trouvent sur des routes ou des remblais de gravier abandonnés créés à des fins de construction. Nous formulons l’hypothèse selon laquelle les remblais de gravier produisent des îlots de substrat qui conviennent à la croissance des arbres dans l’Arctique en raison de la plus grande profondeur d’enracinement, de la présence de microsites bien irrigués, d’une saison de croissance prolongée et de la capacité de tamponnage de l’acide. De plus, la circulation le long de la route Dalton, orientée du sud au nord, depuis la forêt boréale de l’intérieur de l’Alaska jusqu’à l’Arctique pourrait favoriser la dissémination des graines à l’échelle de la barrière topographique de la chaîne de Brooks. Par conséquent, le développement accru de l’Arctique accélérera vraisemblablement l’établissement d’arbres, au fur et à mesure que le climat deviendra plus favorable à la croissance des arbres. La colonisation des arbres liée au développement de l’infrastructure entrerait en contraste marqué avec les modèles conceptuels antérieurs de l’avancement graduel de la limite forestière à la suite de perturbations

Cortisol interferes with the estradiol-induced surge of lutenizing hormone in the ewe

Two experiments were conducted to test the hypothesis that cortisol interferes with the positive feedback action of estradiol that induces the luteinizing hormone (LH) surge. Ovariectomized sheep were treated sequentially with progesterone and estradiol to create artificial estrous cycles. Cortisol or vehicle (saline) was infused from 2 h before the estradiol stimulus through the time of the anticipated LH surge in the artificial follicular phase of two successive cycles. The plasma cortisol increment produced by infusion was &sim;1.5 times greater than maximal concentrations seen during infusion of endotoxin, which is a model of immune/inflammatory stress. In experiment 1, half of the ewes received vehicle in the first cycle and cortisol in the second; the others were treated in reverse order. All ewes responded with an LH surge. Cortisol delayed the LH surge and reduced its amplitude, but both effects were observed only in the second cycle. Experiment 2 was modified to provide better control for a cycle effect. Four treatment sequences were tested (cycle 1-cycle 2): vehicle-vehicle, cortisol-cortisol, vehicle-cortisol, cortisol-vehicle. Again, cortisol delayed but did not block the LH surge, and this delay occurred in both cycles. Thus, an elevation in plasma cortisol can interfere with the positive feedback action of estradiol by delaying and attenuating the LH surge.<br /

Post-drainage vegetation, microtopography and organic matter in Arctic drained lake basins

Wetlands in Arctic drained lake basins (DLBs) have a high potential for carbon storage in vegetation and peat as well as for elevated greenhouse gas emissions. However, the evolution of vegetation and organic matter is rarely studied in DLBs, making these abundant wetlands especially uncertain elements of the permafrost carbon budget. We surveyed multiple DLB generations in northern Alaska with the goal to assess vegetation, microtopography, and organic matter in surface sediment and pond water in DLBs and to provide the first high-resolution land cover classification for a DLB system focussing on moisture-related vegetation classes for the Teshekpuk Lake region. We associated sediment properties and methane concentrations along a post-drainage succession gradient with remote sensing-derived land cover classes. Our study distinguished five eco-hydrological classes using statistical clustering of vegetation data, which corresponded to the land cover classes. We identified surface wetness and time since drainage as predictors of vegetation composition. Microtopographic complexity increased after drainage. Organic carbon and nitrogen contents in sediment, and dissolved organic carbon (DOC) and dissolved nitrogen (DN) in ponds were high throughout, indicating high organic matter availability and decomposition. We confirmed wetness as a predictor of sediment methane concentrations. Our findings suggest moderate to high methane concentrations independent of drainage age, with particularly high concentrations beneath submerged patches (up to 200 μmol l−1) and in pond water (up to 22 μmol l−1). In our DLB system, wet and shallow submerged patches with high methane concentrations occupied 54% of the area, and ponds with high DOC, DN and methane occupied another 11%. In conclusion, we demonstrate that DLB wetlands are highly productive regarding organic matter decomposition and methane production. Machine learning-aided land cover classification using high-resolution multispectral satellite imagery provides a useful tool for future upscaling of sediment properties and methane emission potentials from Arctic DLBs

Remote sensing-based statistical approach for defining drained lake basins in a continuous Permafrost region, North Slope of Alaska

Lake formation and drainage are pervasive phenomena in permafrost regions. Drained lake basins (DLBs) are often the most common landforms in lowland permafrost regions in the Arctic (50% to 75% of the landscape). However, detailed assessments of DLB distribution and abundance are limited. In this study, we present a novel and scalable remote sensing-based approach to identifying DLBs in lowland permafrost regions, using the North Slope of Alaska as a case study. We validated this first North Slope-wide DLB data product against several previously published sub-regional scale datasets and manually classified points. The study area covered \u3e71,000 km2, including a \u3e39,000 km2 area not previously covered in existing DLB datasets. Our approach used Landsat-8 multispectral imagery and ArcticDEM data to derive a pixel-by-pixel statistical assessment of likelihood of DLB occurrence in sub-regions with different permafrost and periglacial landscape conditions, as well as to quantify aerial coverage of DLBs on the North Slope of Alaska. The results were consistent with previously published regional DLB datasets (up to 87% agreement) and showed high agreement with manually classified random points (64.4–95.5% for DLB and 83.2– 95.4% for non-DLB areas). Validation of the remote sensing-based statistical approach on the North Slope of Alaska indicated that it may be possible to extend this methodology to conduct a comprehensive assessment of DLBs in pan-Arctic lowland permafrost regions. Better resolution of the spatial distribution of DLBs in lowland permafrost regions is important for quantitative studies on landscape diversity, wildlife habitat, permafrost, hydrology, geotechnical conditions, and high-lat-itude carbon cycling

Arctic tundra shrubification: a review of mechanisms and impacts on ecosystem carbon balance

Vegetation composition shifts, and in particular, shrub expansion across the Arctic tundra are some of the most important and widely observed responses of high-latitude ecosystems to rapid climate warming. These changes in vegetation potentially alter ecosystem carbon balances by affecting a complex set of soil-plant-atmosphere interactions. In this review, we synthesize the literature on (a) observed shrub expansion, (b) key climatic and environmental controls and mechanisms that affect shrub expansion, (c) impacts of shrub expansion on ecosystem carbon balance, and (d) research gaps and future directions to improve process representations in land models. A broad range of evidence, including in-situ observations, warming experiments, and remotely sensed vegetation indices have shown increases in growth and abundance of woody plants, particularly tall deciduous shrubs, and advancing shrublines across the circumpolar Arctic. This recent shrub expansion is affected by several interacting factors including climate warming, accelerated nutrient cycling, changing disturbance regimes, and local variation in topography and hydrology. Under warmer conditions, tall deciduous shrubs can be more competitive than other plant functional types in tundra ecosystems because of their taller maximum canopy heights and often dense canopy structure. Competitive abilities of tall deciduous shrubs vs herbaceous plants are also controlled by variation in traits that affect carbon and nutrient investments and retention strategies in leaves, stems, and roots. Overall, shrub expansion may affect tundra carbon balances by enhancing ecosystem carbon uptake and altering ecosystem respiration, and through complex feedback mechanisms that affect snowpack dynamics, permafrost degradation, surface energy balance, and litter inputs. Observed and projected tall deciduous shrub expansion and the subsequent effects on surface energy and carbon balances may alter feedbacks to the climate system. Land models, including those integrated in Earth System Models, need to account for differences in plant traits that control competitive interactions to accurately predict decadal- to centennial-scale tundra vegetation and carbon dynamics

A holistic and comprensive data approach validates the distribution of the critically endangered flapper skate (Dipturus intermedius)

Morphological similarities between skates of the genus Dipturus in the north-eastern Atlantic and mediterranean have resulted in longstanding confusion, misidentification and misreporting. Current evidence indicates that the common skate is best explained as two species, the flapper skate (Dipturus intermedius) and the common blue skate (D. batis). However, some management and conservation initiatives developed prior to the separation continue to refer to common skate (as ‘D. batis’). This taxonomic uncertainty can lead to errors in estimating population viability, distribution range, and impact on fisheries management and conservation status. Here, we demonstrate how a concerted taxonomic approach, using molecular data and a combination of survey, angler and fisheries data, in addition to expert witness statements, can be used to build a higher resolution picture of the current distribution of D. intermedius. Collated data indicate that flapper skate has a more constrained distribution compared to the perceived distribution of the ‘common skate’, with most observations recorded from Norway and the western and northern seaboards of Ireland and Scotland, with occasional specimens from Portugal and the Azores. Overall, the revised spatial distribution of D. intermedius has significantly reduced the extant range of the species, indicating a possibly fragmented distribution range.acceptedVersio

Russian Arctic Vegetation Archive—A new database of plant community composition and environmental conditions

Motivation: The goal of the Russian Arctic Vegetation Archive (AVA-RU) is to unite and harmonize data of plot-based plant species and their abundance, vegetation structure and environmental variables from the Russian Arctic. This database can be used to assess the status of the Russian Arctic vegetation and as a baseline to document biodiversity changes in the future. The archive can be used for scientific studies as well as to inform nature protection and restoration efforts. Main types of variables contained: The archive contains 2873 open-access geobotanical plots. The data include the full species. Most plots include information on the horizontal (cover per species and morphological group) and vertical (average height per morphological group) structure of vegetation, site and soil descriptions and data quality estimations. In addition to the open-access data, the AVA-RU website contains 1912 restricted-access plots. Spatial location and grain: The plots of 1–100 m2 size were sampled in Arctic Russia and Scandinavia. Plots in Russia covered areas from the West to the East, including the European Russian Arctic (Kola Peninsula, Nenets Autonomous district), Western Siberia (Northern Urals, Yamal, Taza and Gydan peninsulas), Central Siberia (Taymyr peninsula, Bolshevik island), Eastern Siberia (Indigirka basin) and the Far East (Wrangel island). About 72% of the samples are georeferenced. Time period and grain: The data were collected once at each location between 1927 and 2022. Major taxa and level of measurement: Plots include observations of >1770 vascular plant and cryptogam species and subspecies. Software format: CSV files (1 file with species list and abundance, 1 file with environmental variables and vegetation structure) are stored at the AVA-RU website (https://avarus.space/), and are continuously updated with new datasets. The open-access data are available on Dryad and all the datasets have a backup on the server of the University of Zurich. The data processing R script is available on Dryad

Creation of an NCI comparative brain tumor consortium: informing the translation of new knowledge from canine to human brain tumor patients

On September 14–15, 2015, a meeting of clinicians and investigators in the fields of veterinary and human neuro-oncology, clinical trials, neuropathology, and drug development was convened at the National Institutes of Health campus in Bethesda, Maryland. This meeting served as the inaugural event launching a new consortium focused on improving the knowledge, development of, and access to naturally occurring canine brain cancer, specifically glioma, as a model for human disease. Within the meeting, a SWOT (strengths, weaknesses, opportunities, and threats) assessment was undertaken to critically evaluate the role that naturally occurring canine brain tumors could have in advancing this aspect of comparative oncology aimed at improving outcomes for dogs and human beings. A summary of this meeting and subsequent discussion are provided to inform the scientific and clinical community of the potential for this initiative. Canine and human comparisons represent an unprecedented opportunity to complement conventional brain tumor research paradigms, addressing a devastating disease for which innovative diagnostic and treatment strategies are clearly needed

Concentrated, non-foaming solution of quaternary ammonium compounds and methods of use

A concentrated quaternary ammonium compound (QAC) solution with a concentration from greater than about 10% by weight and at least one solubility enhancing agent, such as an alcohol, is disclosed. A diluted QAC solution is used to contact food products to prevent microbial growth on the food products from a broad spectrum of foodborne microbial contamination. A method of contacting the food products with the dilute QAC for an application time of at least 0.1 second is disclosed. The foods that can be treated by this method are meat and meat products, seafood, vegetables, fruit, dairy products, pet foods and snacks, and any other food that can be treated and still retain its appearance and texture. One of the treatment methods is spraying and misting the QAC solutions on the food products for an application time of at least 0.1 second to prevent broad spectrum foodborne microbial contamination