Threshold for Onset of Injury in Chinook Salmon from Exposure to Impulsive Pile Driving Sounds

The risk of effects to fishes and other aquatic life from impulsive sound produced by activities such as pile driving and seismic exploration is increasing throughout the world, particularly with the increased exploitation of oceans for energy production. At the same time, there are few data that provide insight into the effects of these sounds on fishes. The goal of this study was to provide quantitative data to define the levels of impulsive sound that could result in the onset of barotrauma to fish. A High Intensity Controlled Impedance Fluid filled wave Tube was developed that enabled laboratory simulation of high-energy impulsive sound that were characteristic of aquatic far-field, plane-wave acoustic conditions. The sounds used were based upon the impulsive sounds generated by an impact hammer striking a steel shell pile. Neutrally buoyant juvenile Chinook salmon (Oncorhynchus tshawytscha) were exposed to impulsive sounds and subsequently evaluated for barotrauma injuries. Observed injuries ranged from mild hematomas at the lowest sound exposure levels to organ hemorrhage at the highest sound exposure levels. Frequency of observed injuries were used to compute a biological response weighted index (RWI) to evaluate the physiological impact of injuries at the different exposure levels. As single strike and cumulative sound exposure levels (SELss, SELcum respectively) increased, RWI values increased. Based on the results, tissue damage associated with adverse physiological costs occurred when the RWI was greater than 2. In terms of sound exposure levels a RWI of 2 was achieved for 1920 strikes by 177 dB re 1 µPa2⋅s SELss yielding a SELcum of 210 dB re 1 µPa2⋅s, and for 960 strikes by 180 dB re 1 µPa2⋅s SELss yielding a SELcum of 210 dB re 1 µPa2⋅s. These metrics define thresholds for onset of injury in juvenile Chinook salmon

Recovery of Barotrauma Injuries in Chinook Salmon, Oncorhynchus tshawytscha from Exposure to Pile Driving Sound

Juvenile Chinook salmon, Oncorhynchus tshawytscha, were exposed to simulated high intensity pile driving signals to evaluate their ability to recover from barotrauma injuries. Fish were exposed to one of two cumulative sound exposure levels for 960 pile strikes (217 or 210 dB re 1 µPa2·s SELcum; single strike sound exposure levels of 187 or 180 dB re 1 µPa2⋅s SELss respectively). This was followed by an immediate assessment of injuries, or assessment 2, 5, or 10 days post-exposure. There were no observed mortalities from the pile driving sound exposure. Fish exposed to 217 dB re 1 µPa2·s SELcum displayed evidence of healing from injuries as post-exposure time increased. Fish exposed to 210 dB re 1 µPa2·s SELcum sustained minimal injuries that were not significantly different from control fish at days 0, 2, and 10. The exposure to 210 dB re 1 µPa2·s SELcum replicated the findings in a previous study that defined this level as the threshold for onset of injury. Furthermore, these data support the hypothesis that one or two Mild injuries resulting from pile driving exposure are unlikely to affect the survival of the exposed animals, at least in a laboratory environment

Mendelian randomization integrating GWAS and eQTL data reveals genetic determinants of complex and clinical traits

Genome-wide association studies (GWAS) have identified thousands of variants associated with complex traits, but their biological interpretation often remains unclear. Most of these variants overlap with expression QTLs, indicating their potential involvement in regulation of gene expression. Here, we propose a transcriptome-wide summary statistics-based Mendelian Randomization approach (TWMR) that uses multiple SNPs as instruments and multiple gene expression traits as exposures, simultaneously. Applied to 43 human phenotypes, it uncovers 3,913 putatively causal gene-trait associations, 36% of which have no genome-wide significant SNP nearby in previous GWAS. Using independent association summary statistics, we find that the majority of these loci were missed by GWAS due to power issues. Noteworthy among these links is educational attainment-associated BSCL2, known to carry mutations leading to a Mendelian form of encephalopathy. We also find pleiotropic causal effects suggestive of mechanistic connections. TWMR better accounts for pleiotropy and has the potential to identify biological mechanisms underlying complex traits

Refining Attention-Deficit/Hyperactivity Disorder and Autism Spectrum Disorder Genetic Loci by Integrating Summary Data From Genome-wide Association, Gene Expression, and DNA Methylation Studies

Background: Recent genome-wide association studies (GWASs) identified the first genetic loci associated with attention-deficit/hyperactivity disorder (ADHD) and autism spectrum disorder (ASD). The next step is to use these results to increase our understanding of the biological mechanisms involved. Most of the identified variants likely influence gene regulation. The aim of the current study is to shed light on the mechanisms underlying the genetic signals and prioritize genes by integrating GWAS results with gene expression and DNA methylation (DNAm) levels. Methods: We applied summary-data–based Mendelian randomization to integrate ADHD and ASD GWAS data with fetal brain expression and methylation quantitative trait loci, given the early onset of these disorders. We also analyzed expression and methylation quantitative trait loci datasets of adult brain and blood, as these provide increased statistical power. We subsequently used summary-data–based Mendelian randomization to investigate if the same variant influences both DNAm and gene expression levels. Results: We identified multiple gene expression and DNAm levels in fetal brain at chromosomes 1 and 17 that were associated with ADHD and ASD, respectively, through pleiotropy at shared genetic variants. The analyses in brain and blood showed additional associated gene expression and DNAm levels at the same and additional loci, likely because of increased statistical power. Several of the associated genes have not been identified in ADHD and ASD GWASs before. Conclusions: Our findings identified the genetic variants associated with ADHD and ASD that likely act through gene regulation. This facilitates prioritization of candidate genes for functional follow-up studies

The hearing abilities of elasmobranch fishes

The hearing abilities of elasmobranch fishes were examined in response to several types of stimuli using auditory evoked potentials (AEP). Audiograms were acquired for the nurse shark, Ginglymostoma cirratum, the yellow stingray, Urobatis jamaicensis, in a controlled environment using a monopole underwater speaker. A dipole stimulus was used to measure the hearing thresholds of the horn shark, Heterodontus francisi, and the white-spotted bamboo shark, Chiloscyllium plagiosum. The dipole experiments yielded much lower thresholds than any other experiment, suggesting that this type of sound specifically stimulated the macula neglecta by creating a strong velocity flow above the head of the shark. A shaker table was created to measure the directional hearing thresholds of the C. plagiosum and the brown-banded bamboo shark, C. punctatum. This experiment showed that these sharks could sense accelerations equally in all directions suggesting that they have omnidirectional ears. The results also yielded higher thresholds than with the dipole, suggesting that the macula neglecta was not stimulated as the sharks were being accelerated. An audiogram was also acquired for the Atlantic sharpnose shark, Rhizoprionodon terraenovae, using a monopole speaker in the field. This experiment revealed that the hearing thresholds did not appear to be masked by ambient noise levels, and resulting thresholds yielded the lowest levels detected by any elasmobranch using AEPs. Taken together, these experiments show that sharks are most sensitive to low frequency sounds in the near field and use both their otoconial endorgans as well as the macula neglecta to sense particle motion

On the Attraction of Larval Fishes to Reef Sounds

Several recent studies have shown that some larval fishes will approach underwater speakers that broadcast reef noise, leading to the hypothesis that larval fishes use acoustic cues to locate reefs for settlement. The purpose of the present study was to examine existing hearing data of fishes in relation to ambient sound levels around reefs to estimate the distance over which reef fish might detect reefs sounds, and to highlight how future data should be collected to answer this important question. The few available measurements of larval fish hearing indicate that they have poor acoustic sensitivity relative to sound levels found around reefs. The apparent poor sensitivity of larval fishes to sound pressure suggests that particle motion, the back and forth motion of water that is associated with acoustic pressure, is the principal stimulus for larval fish hearing. To estimate the maximum distance of orientation to reefs, the acoustic particle velocity of reef sound was calculated from measurements of the acoustic pressure on and away from shore, assuming conditions of a planar propagating wave. Based on these calculations, we propose that larval fishes in acoustically unbounded habitats most probably cannot detect the ambient noise of particle motion at distances \u3e1 km. To better understand the distances over which larval fishes can detect sounds from reefs, more studies on larval fish hearing and reef noise are needed. Larval fish hearing measurements need to independently distinguish sensitivities to particle motion and acoustic pressure. Likewise, independent measurements of particle motion around reefs are required

Recovery of barotrauma injuries resulting from exposure to pile driving sound in two sizes of hybrid striped bass.

The effects of loud sounds on fishes, such as those produced during impulsive pile driving, are an increasing concern in the management of aquatic ecosystems. However, very little is known about such effects. Accordingly, a High Intensity Controlled Impedance Fluid Filled wave Tube (HICI-FT) was used to investigate the effects of sounds produced by impulsive pile driving on two size groups of hybrid striped bass (white bass Moronechrysops x striped bass Moronesaxatilis). The larger striped bass (mean size 17.2 g) had more severe injuries, as well as more total injuries, than the smaller fish (mean size 1.3 g). However, fish in each size group recovered from most injuries within 10 days of exposure. A comparison with different species from previously published studies show that current results support the observation that fishes with physoclistous swim bladders are more susceptible to injury from impulsive pile driving than are fishes with physostomous swim bladders

Data from: Effects of exposure to pile driving sounds on the lake sturgeon, Nile tilapia, and hogchoker

Pile driving and other impulsive sound sources have the potential to injure or kill fishes. One mechanism that produces injuries is the rapid motion of the walls of the swim bladder as it repeatedly contacts nearby tissues. To further understand the involvement of the swim bladder in tissue damage a specially-designed wave tube was used to expose three species to pile driving sounds. Species included lake sturgeon (Acipenser fulvecens) with an open (physoclistous) swim bladder, Nile tilapia (Oreochromis niloticus) with a closed (physostomous) swim bladder, and the hogchoker (Trinectes maculates) a flatfish without a swim bladder. There were no visible injuries in any of the exposed hogchokers, while a variety of injuries were observed in the lake sturgeon and Nile tilapia. At the loudest cumulative and single strike sound exposure levels, the Nile tilapia had the highest total injuries and the most severe injuries per fish. As exposure levels decreased, the number and severity of injuries were more similar between the two species. These results suggest that the presence and type of swim bladder correlated with injury at higher sound levels, while the extent of injury at lower sound exposure levels was similar for both kinds of swim bladders