An X-ray Selected Galaxy Cluster at z=1.11 in the Rosat Deep Cluster Survey

We report the discovery of an X-ray luminous galaxy cluster at z =1.11. RDCS J0910+5422 was selected as an X-ray cluster candidate in the ROSAT Deep Cluster Survey on the basis of its spatial extent in a Rosat PSPC image. Deep optical and near-IR imaging reveal a red galaxy overdensity around the peak of the X-ray emission, with a significant excess of objects with J-K and I-K colors typical of elliptical galaxies at z ~ 1.0. Spectroscopic observations at the Keck II telescope secured 9 galaxy redshifts in the range 1.095<z<1.120 yielding a mean cluster redshift of =1.106. Eight of these galaxies lie within a 30 arcsec radius around the peak X-ray emission. A deep Chandra ACIS exposure on this field shows extended X-ray morphology and allows the X-ray spectrum of the intracluster medium to be measured. The cluster has a bolometric luminosity L_x = 2.48^{+0.33}_{-0.26} x 10^44 ergs/s, a temperature of kT = 7.2^{+2.2}_{-1.4} keV, and a mass within r = 1 Mpc of 7.0 x 10^14 M_sun (H_0=65 km/s/Mpc, Omega_m = 0.3, and Lambda = 0.7). The spatial distribution of the cluster members is elongated, which is not due to an observational selection effect, and followed by the X-ray morphology. The X-ray surface brightness profile and the spectrophotometric properties of the cluster members suggest that this is an example of a massive cluster in an advanced stage of formation with a hot ICM and an old galaxy population already in place at z > 1.Comment: 19 pages, 7 figures: Figures 1,4,6 included as separate jpg files. Accepted for publication in The Astronomical Journa

From Algae to Angiosperms – Inferring the Phylogeny of Green Plants ( Viridiplantae ) from 360 Plastid Genomes

Background Next-generation sequencing has provided a wealth of plastid genome sequence data from an increasingly diverse set of green plants (Viridiplantae). Although these data have helped resolve the phylogeny of numerous clades (e.g., green algae, angiosperms, and gymnosperms), their utility for inferring relationships across all green plants is uncertain. Viridiplantae originated 700-1500 million years ago and may comprise as many as 500,000 species. This clade represents a major source of photosynthetic carbon and contains an immense diversity of life forms, including some of the smallest and largest eukaryotes. Here we explore the limits and challenges of inferring a comprehensive green plant phylogeny from available complete or nearly complete plastid genome sequence data. Results We assembled protein-coding sequence data for 78 genes from 360 diverse green plant taxa with complete or nearly complete plastid genome sequences available from GenBank. Phylogenetic analyses of the plastid data recovered well-supported backbone relationships and strong support for relationships that were not observed in previous analyses of major subclades within Viridiplantae. However, there also is evidence of systematic error in some analyses. In several instances we obtained strongly supported but conflicting topologies from analyses of nucleotides versus amino acid characters, and the considerable variation in GC content among lineages and within single genomes affected the phylogenetic placement of several taxa. Conclusions Analyses of the plastid sequence data recovered a strongly supported framework of relationships for green plants. This framework includes: i) the placement of Zygnematophyceace as sister to land plants (Embryophyta), ii) a clade of extant gymnosperms (Acrogymnospermae) with cycads + Ginkgo sister to remaining extant gymnosperms and with gnetophytes (Gnetophyta) sister to non-Pinaceae conifers (Gnecup trees), and iii) within the monilophyte clade (Monilophyta), Equisetales + Psilotales are sister to Marattiales + leptosporangiate ferns. Our analyses also highlight the challenges of using plastid genome sequences in deep-level phylogenomic analyses, and we provide suggestions for future analyses that will likely incorporate plastid genome sequence data for thousands of species. We particularly emphasize the importance of exploring the effects of different partitioning and character coding strategies. http://www.biomedcentral.com/1471-2148/14/2

The lifelong impact of fetal growth restriction on cardiac development

Background: Maternal nutrient restriction (MNR) is a widespread cause of fetal growth restriction (FGR), an independent predictor of heart disease and cardiovascular mortality. Our objective was to examine the developmental and long-term impact of MNR-induced FGR on cardiac structure in a model that closely mimics human development. Methods: A reduction in total caloric intake spanning pregestation through to lactation in guinea pig sows was used to induce FGR. Proliferation, differentiation, and apoptosis of cardiomyocytes were assessed in late-gestation fetal, neonatal, and adult guinea pig hearts. Proteomic analysis and pathway enrichment were performed on fetal hearts. Results: Cardiomyocyte proliferation and the number of mononucleated cells were enhanced in the MNR–FGR fetal and neonatal heart, suggesting a delay in cardiomyocyte differentiation. In fetal hearts of MNR–FGR animals, apoptosis was markedly elevated and the total number of cardiomyocytes reduced, the latter remaining so throughout neonatal and into adult life. A reduction in total cardiomyocyte number in adult MNR–FGR hearts was accompanied by exaggerated hypertrophy and a disorganized architecture. Pathway analysis identified genes related to cell proliferation, differentiation, and survival. Conclusions: FGR influences cardiomyocyte development during critical windows of development, leading to a permanent deficiency in cardiomyocyte number and compensatory hypertrophy in a rodent model that recapitulates human development

Simulating the effect of perennialized cropping systems on nitrate-N losses using the SWAT model

Several newly released crop varieties, including the perennial intermediate wheatgrass (grain marketed as Kernza®), and the winter hardy oilseed crop camelina, have been developed to provide both economic return for farmers and reduced nutrient losses from agricultural fields. Though studies have indicated that these crops could reduce nitrate-nitrogen (N) leaching, little research has been done to determine their effectiveness in reducing nitrate-N loading to surface waters at a watershed scale, or in comparing their performance to more traditional perennial crops, such as alfalfa. In this study, nitrate-N losses were predicted using the Soil and Water Assessment Tool (SWAT) model for the Rogers Creek watershed located in south-central Minnesota, USA. Predicted looses of nitrate-N under three perennialized cropping systems were compared to losses given current cropping practices in a corn (Zea mays L.)-soybean (Glycine max L. Merr.) rotation. The perennialized systems included three separate crop rotations: intermediate wheatgrass (IWG) in rotation with soybean, alfalfa in rotation with corn, and winter camelina in rotation with soybean and winter rye. Model simulation of these rotations required creation of new crop files for IWG and winter camelina within SWAT. These new crop files were validated using measured yield, biomass, and nitrate-N data. Model results show that the IWG and alfalfa rotations were particularly effective at reducing nutrient and sediment losses from agricultural areas in the watershed, but smaller reductions were also achieved with the winter camelina rotation. From model predictions, achieving regional water-quality goals of a 30% reduction in nitrate-N load from fields in the watershed required converting approximately 25, 34, or 57% of current corn-soybean area to the alfalfa, IWG, or camelina rotations, respectively. Results of this study indicate that adoption of these crops could achieve regional water quality goals

KELT-10b: The First Transiting Exoplanet from the KELT-South Survey -- A Hot Sub-Jupiter Transiting a V = 10.7 Early G-Star

We report the discovery of KELT-10b, the first transiting exoplanet discovered using the KELT-South telescope. KELT-10b is a highly inflated sub-Jupiter mass planet transiting a relatively bright $V = 10.7$ star (TYC 8378-64-1), with T$_{eff}$ = $5948\pm74$ K, $\log{g}$ = $4.319_{-0.030}^{+0.020}$ and [Fe/H] = $0.09_{-0.10}^{+0.11}$, an inferred mass M$_{*}$ = $1.112_{-0.061}^{+0.055}$ M$_{\odot}$ and radius R$_{*}$ = $1.209_{-0.035}^{+0.047}$ R$_{\odot}$. The planet has a radius R$_{P}$ = $1.399_{-0.049}^{+0.069}$ R$_{J}$ and mass M$_{P}$ = $0.679_{-0.038}^{+0.039}$ M$_{J}$. The planet has an eccentricity consistent with zero and a semi-major axis $a$ = $0.05250_{-0.00097}^{+0.00086}$ AU. The best fitting linear ephemeris is $T_{0}$ = 2457066.72045$\pm$0.00027 BJD$_{TDB}$ and P = 4.1662739$\pm$0.0000063 days. This planet joins a group of highly inflated transiting exoplanets with a radius much larger and a mass much less than those of Jupiter. The planet, which boasts deep transits of 1.4%, has a relatively high equilibrium temperature of T$_{eq}$ = $1377_{-23}^{+28}$ K, assuming zero albedo and perfect heat redistribution. KELT-10b receives an estimated insolation of $0.817_{-0.054}^{+0.068}$ $\times$ 10$^9$ erg s$^{-1}$ cm$^{-2}$, which places it far above the insolation threshold above which hot Jupiters exhibit increasing amounts of radius inflation. Evolutionary analysis of the host star suggests that KELT-10b is unlikely to survive beyond the current subgiant phase, due to a concomitant in-spiral of the planet over the next $\sim$1 Gyr. The planet transits a relatively bright star and exhibits the third largest transit depth of all transiting exoplanets with V $<$ 11 in the southern hemisphere, making it a promising candidate for future atmospheric characterization studies.Comment: 20 pages, 13 figures, 7 tables, accepted for publication in MNRA

HnRNPA2 is a Novel Histone Acetyltransferase That Mediates Mitochondrial Stress-Induced Nuclear Gene Expression

Reduced mitochondrial DNA copy number, mitochondrial DNA mutations or disruption of electron transfer chain complexes induce mitochondria-to-nucleus retrograde signaling, which induces global change in nuclear gene expression ultimately contributing to various human pathologies including cancer. Recent studies suggest that these mitochondrial changes cause transcriptional reprogramming of nuclear genes although the mechanism of this cross talk remains unclear. Here, we provide evidence that mitochondria-to-nucleus retrograde signaling regulates chromatin acetylation and alters nuclear gene expression through the heterogeneous ribonucleoprotein A2 (hnRNAP2). These processes are reversed when mitochondrial DNA content is restored to near normal cell levels. We show that the mitochondrial stress-induced transcription coactivator hnRNAP2 acetylates Lys 8 of H4 through an intrinsic histone lysine acetyltransferase (KAT) activity with Arg 48 and Arg 50 of hnRNAP2 being essential for acetyl-CoA binding and acetyltransferase activity. H4K8 acetylation at the mitochondrial stress-responsive promoters by hnRNAP2 is essential for transcriptional activation. We found that the previously described mitochondria-to-nucleus retrograde signaling-mediated transformation of C2C12 cells caused an increased expression of genes involved in various oncogenic processes, which is retarded in hnRNAP2 silenced or hnRNAP2 KAT mutant cells. Taken together, these data show that altered gene expression by mitochondria-to-nucleus retrograde signaling involves a novel hnRNAP2-dependent epigenetic mechanism that may have a role in cancer and other pathologies

The cancer genome atlas pan-cancer analysis project

The Cancer Genome Atlas (TCGA) Research Network has profiled and analyzed large numbers of human tumors to discover molecular aberrations at the DNA, RNA, protein and epigenetic levels. The resulting rich data provide a major opportunity to develop an integrated picture of commonalities, differences and emergent themes across tumor lineages. The Pan-Cancer initiative compares the first 12 tumor types profiled by TCGA. Analysis of the molecular aberrations and their functional roles across tumor types will teach us how to extend therapies effective in one cancer type to others with a similar genomic profile

A Trial of Wound Irrigation in the Initial Management of Open Fracture Wounds

Copyright © 2015 Massachusetts Medical Society. BACKGROUND The management of open fractures requires wound irrigation and dridement to remove contaminants, but the effectiveness of various pressures and solutions for irrigation remains controversial. We investigated the effects of castile soap versus normal saline irrigation delivered by means of high, low, or very low irrigation pressure. METHODS In this study with a 2-by-3 factorial design, conducted at 41 clinical centers, we randomly assigned patients who had an open fracture of an extremity to undergo irrigation with one of three irrigation pressures (high pressure [\u3e20 psi], low pressure [5 to 10 psi], or very low pressure [1 to 2 psi]) and one of two irrigation solutions (castile soap or normal saline). The primary end point was reoperation within 12 months after the index surgery for promotion of wound or bone healing or treatment of a wound infection. RESULTS A total of 2551 patients underwent randomization, of whom 2447 were deemed eligible and included in the final analyses. Reoperation occurred in 109 of 826 patients (13.2%) in the high-pressure group, 103 of 809 (12.7%) in the low-pressure group, and 111 of 812 (13.7%) in the very-low-pressure group. Hazard ratios for the three pairwise comparisons were as follows: for low versus high pressure, 0.92 (95% confidence interval [CI], 0.70 to 1.20; P = 0.53), for high versus very low pressure, 1.02 (95% CI, 0.78 to 1.33; P = 0.89), and for low versus very low pressure, 0.93 (95% CI, 0.71 to 1.23; P = 0.62). Reoperation occurred in 182 of 1229 patients (14.8%) in the soap group and in 141 of 1218 (11.6%) in the saline group (hazard ratio, 1.32, 95% CI, 1.06 to 1.66; P = 0.01). CONCLUSIONS The rates of reoperation were similar regardless of irrigation pressure, a finding that indicates that very low pressure is an acceptable, low-cost alternative for the irrigation of open fractures. The reoperation rate was higher in the soap group than in the saline group. (Funded by the Canadian Institutes of Health Research and others; FLOW ClinicalTrials.gov number, NCT00788398

Systematic reviews experience major limitations in reporting absolute effects

Objectives: Expressing treatment effects in relative terms yields larger numbers than expressions in absolute terms, affecting the judgment of the clinicians and patients regarding the treatment options. It is uncertain how authors of systematic reviews (SRs) absolute effect estimates are reported in. We therefore undertook a systematic survey to identify and describe the reporting and methods for calculating absolute effect estimates in SRs. Study Design and Setting: Two reviewers independently screened title, abstract, and full text and extracted data from a sample of Cochrane and non-Cochrane SRs. We used regression analyses to examine the association between study characteristics and the reporting of absolute estimates for the most patient-important outcome. Results: We included 202 SRs (98 Cochrane and 104 non-Cochrane), most of which (92.1%) included standard meta-analyses including relative estimates of effect. Of the 202 SRs, 73 (36.1%) reported absolute effect estimates for the most patient-important outcome. SRs with statistically significant effects were more likely to report absolute estimates (odds ratio, 2.26; 95% confidence interval: 1.08, 4.74). The most commonly reported absolute estimates were: for each intervention, risk of adverse outcomes expressed as a percentage (41.1%); number needed to treat (26.0%); and risk for each intervention expressed as natural units or natural frequencies (24.7%). In 12.3% of the SRs that reported absolute effect estimates for both benefit and harm outcomes, harm outcomes were reported exclusively as absolute estimates. Exclusively reporting of beneficial outcomes as absolute estimates occurred in 6.8% of the SRs. Conclusions: Most SRs do not report absolute effects. Those that do often report them inadequately, thus requiring users of SRs to generate their own estimates of absolute effects. For any apparently effective or harmful intervention, SR authors should report both absolute and relative estimates to optimize the interpretation of their findings. (C) 2016 Elsevier Inc. All rights reserved.Peer reviewe