Darwin’s Diagram of Divergence of Taxa as a Causal Model for the Origin of Species

On the basis that Darwin\u27s theory of evolution encompasses two logically independent processes (common descent and natural selection), the only figure in On the Origin of Species (the Diagram of Divergence of Taxa) is often interpreted as illustrative of only one of these processes: the branching patterns representing common ancestry. Here, I argue that Darwin\u27s Diagram of Divergence of Taxa represents a broad conceptual model of Darwin\u27s theory, illustrating the causal efficacy of natural selection in producing well-defined varieties and ultimately species. The Tree Diagram encompasses the idea that natural selection explains common descent and the origin of organic diversity, thus representing a comprehensive model of Darwin\u27s theory on the origin of species. I describe Darwin\u27s Tree Diagram in relation to his argumentative strategy under the vera causa principle, and suggest that the testing of his theory based on the evidence from the geological record, the geographical distribution of organisms, and the mutual affinities of organic beings can be framed under the hypothetico-deductive method. Darwin\u27s Diagram of Divergence of Taxa therefore represents a broad conceptual model that helps understanding the causal construction of Darwin\u27s theory of evolution, the structure of his argumentative strategy, and the nature of his scientific methodology

Population Viability Analysis of the Blue-Throated Macaw (Ara Glaucogularis) Using Individual-Based and Cohort-Based PVA Programs

We developed a demographic model to perform a population viability analysis (PVA) of the Blue-throated Macaw (Ara glaucogularis), a critically endangered species endemic to Bolivia. PVA simulations were run using individual based (VORTEX 9.72) and cohort-based (RAMAS GIS 4.0) programs. A baseline simulation allowed for the assessment of the status of the species based on estimates of extinction risk and population declines under current conditions of abundance and habitat availability. The role of multiple demographic, environmental, and anthropogenic parameters was evaluated to assess changes affecting population declines and extinction risk. The baseline simulation showed that the Blue-throated Macaw has a relatively low probability of extinction during the next fifty years. However, continuing threats, including declines in abundance, small population size, and low population growth rates, make this species highly vulnerable to any change. Elasticity analysis of the baseline simulation and sensitivity analysis of changes in different demographic parameters demonstrated that increases in adult mortality had the greatest effect on population growth rate and extinction risk. Furthermore, simulations of anthropogenic impacts showed that small increases in habitat loss (2%) and population harvesting (3%) had drastic effects on population decline. Results from this study emphasize the need for conservation actions aimed at protecting breeding individuals (i.e., decreasing adult mortality), preventing poaching activities, and promoting the conservation of available habitat for nesting sites. © Strem and Bouzat; Licensee Bentham Open

Regional genetic structure in the Magellanic penguin (Spheniscus magellanicus) suggests metapopulation dynamics

Using microsatellite markers and mitochondrial DNA (mtDNA) sequences (cytochrome oxidase 1 gene), we estimated levels of genetic structuring among nine Magellanic Penguin (Spheniscus magellanicus) colonies distributed throughout three major reproductive regions of the South Atlantic Ocean. Overall, breeding colonies showed relatively high levels of genetic diversity at both nuclear and mtDNA markers (mean heteorzygosity: He = 0.598; mean allelic diversity: A = 7.11; mtDNA haplotype diversity: h = 0.812). A hierarchical analysis of molecular variance based on microsatellite data showed limited genetic structuring of breeding colonies, with 99% of the variation explained by differences among individuals and 0.7–1.0% attributed to differences among the three regions. The mtDNA analysis revealed higher levels of genetic structuring, with 3.43% of the variation explained by regions and 2.24% explained by colonies within the regions. Furthermore, a Mantel test revealed a significant association between geographic and genetic distances among colonies. The limited genetic structuring we detected is likely a result of (1) population intermixing through natal dispersal and (2) the large effective sizes of the reproductive colonies, both of which prevent genetic differentiation at neutral markers, balanced with (3) the regional association of breeding colonies to distinct feeding grounds and (4) a recent expansion of the population. Our results suggest that the demographic dynamics of breeding colonies of Magellanic Penguins may be framed under a metapopulation model, in which colonies with large numbers of breeding pairs could be considered source populations for maintaining the overall abundance of this species in the Atlantic Ocean

Cannabidiol as a modulator of α7 nicotinic receptors

Cannabidiol (CBD), an important terpenoid compound from marijuana with no psychoactive effects, has become of great pharmaceutical interest for several health conditions. As CBD is a multitarget drug, there is a need to establish the molecular mechanisms by which CBD may exert therapeutic as well as adverse effects. The α7 nicotinic acetylcholine receptor (α7 nAChR) is a cation-permeable ACh-gated channel present in the nervous system and in non-neuronal cells. It is involved in different pathological conditions, including neurological and neurodegenerative disorders, inflammation, and cancer. By high-resolution single-channel recordings and confocal microscopy, we here reveal how CBD modulates α7 nAChR ionotropic and metabotropic functions. CBD leads to a profound concentration-dependent decrease of α7 nAChR single-channel activity with an IC50 in the sub-micromolar range. The inhibition of α7 nAChR activity, which takes place through a membrane pathway, is neither mediated by receptor phosphorylation nor overcome by positive allosteric modulators and is compatible with CBD stabilization of resting or desensitized α7 nAChR conformational states. CBD modulation is complex as it also leads to the later appearance of atypical, low-frequency α7 nAChR channel openings. At the cellular level, CBD inhibits the increase in intracellular calcium triggered by α7 nAChR activation, thus decreasing cell calcium responses. The modulation of α7 nAChR is of pharmacological relevance and should be considered in the evaluation of CBD potential therapeutic uses. Thus, our study provides novel molecular information of CBD multiple actions and targets, which is required to set the basis for prospective applications in human health.Fil: Chrestia, Juan Facundo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Bahía Blanca. Instituto de Investigaciones Bioquímicas de Bahía Blanca. Universidad Nacional del Sur. Instituto de Investigaciones Bioquímicas de Bahía Blanca; Argentina. Universidad Nacional del Sur. Departamento de Biología, Bioquímica y Farmacia; ArgentinaFil: Esandi, María del Carmen. Universidad Nacional del Sur. Departamento de Biología, Bioquímica y Farmacia; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Bahía Blanca. Instituto de Investigaciones Bioquímicas de Bahía Blanca. Universidad Nacional del Sur. Instituto de Investigaciones Bioquímicas de Bahía Blanca; ArgentinaFil: Bouzat, Cecilia Beatriz. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Bahía Blanca. Instituto de Investigaciones Bioquímicas de Bahía Blanca. Universidad Nacional del Sur. Instituto de Investigaciones Bioquímicas de Bahía Blanca; Argentina. Universidad Nacional del Sur. Departamento de Biología, Bioquímica y Farmacia; Argentin

The Role of Demographic History and Selection in Shaping Genetic Diversity of the Galápagos Penguin (Spheniscus mendiculus)

Although many studies have documented the effects of demographic bottlenecks on the genetic diversity of natural populations, there is conflicting evidence of the roles that genetic drift and selection may play in driving changes in genetic variation at adaptive loci. We analyzed genetic variation at microsatellite and mitochondrial loci in conjunction with an adaptive MHC class II locus in the Galápagos penguin (Spheniscus mendiculus), a species that has undergone serial demographic bottlenecks associated with El Niño events through its evolutionary history. We compared levels of variation in the Galápagos penguin to those of its congener, the Magellanic penguin (Spheniscus magellanicus), which has consistently maintained a large population size and thus was used as a non-bottlenecked control. The comparison of neutral and adaptive markers in these two demographically distinct species allowed assessment of the potential role of balancing selection in maintaining levels of MHC variation during bottleneck events. Our analysis suggests that the lack of genetic diversity at both neutral and adaptive loci in the Galápagos penguin likely resulted from its restricted range, relatively low abundance, and history of demographic bottlenecks. The Galápagos penguin revealed two MHC alleles, one mitochondrial haplotype, and six alleles across five microsatellite loci, which represents only a small fraction of the diversity detected in Magellanic penguins. Despite the decreased genetic diversity in the Galápagos penguin, results revealed signals of balancing selection at the MHC, which suggest that selection can mitigate some of the effects of genetic drift during bottleneck events. Although Galápagos penguin populations have persisted for a long time, increased frequency of El Niño events due to global climate change, as well as the low diversity exhibited at immunological loci, may put this species at further risk of extinction

GENETICS AND DEMOGRAPHY OF KELP GULLS IN PATAGONIA

The Kelp Gull (Larus dominicanus), a common seabird in coastal Patagonia, has recently increased in overall abundance and distribution, creating some concerns for the protection and conservation of other native, threatened species. We combined genetic and demographic data of four large Kelp Gull colonies distributed along 1800 km of the northern Patagonian coast of Argentina to further understand patterns of population growth and migration of the species. DNA analysis of variable intron sequences of two separate genes (myelin proteolipid protein, β-fibrinogen) revealed similar intra-colony levels of DNA sequence diversity. Pairwise FST comparisons revealed significant differentiation of the northernmost colony, Islote La Pastosa, from the two southern colonies, Punta Tombo and Isla Vernaci Sudoeste (p < 0.05). Indirect estimates of gene flow suggest significant mixing among colonies (Nm > 6). Demographic estimates revealed that Islote La Pastosa showed an increase in the number of breeding individuals over time (λ = 1.075), representing an area of potential population expansion. This is consistent with previous studies that have suggested that the demographic connectivity among Kelp Gull colonies in Patagonia may follow a source-sink dynamics, where growth rates of growing colonies are fuelled by the immigration of individuals from nearby colonies. The observed pattern also reflects the overall expansion of the species in the Patagonian region. This study suggests that proper management strategies for the Kelp Gull should take into account the genetic and demographic dynamics of this species

Differential Contribution of Subunit Interfaces to α 9 α 10 Nicotinic Acetylcholine Receptor Function

Nicotinic acetylcholine receptors can be assembled from either homomeric or heteromeric pentameric subunit combinations. At the interface of the extracellular domains of adjacent subunits lies the acetylcholine binding site, composed of a principal component provided by one subunit and a complementary component of the adjacent subunit. Compared with neuronal nicotinic acetylcholine cholinergic receptors (nAChRs) assembled from α and β subunits, the α9α10 receptor is an atypical member of the family. It is a heteromeric receptor composed only of α subunits. Whereas mammalian α9 subunits can form functional homomeric α9 receptors, α10 subunits do not generate functional channels when expressed heterologously. Hence, it has been proposed that α10 might serve as a structural subunit, much like a β subunit of heteromeric nAChRs, providing only complementary components to the agonist binding site. Here, we have made use of site-directed mutagenesis to examine the contribution of subunit interface domains to α9α10 receptors by a combination of electrophysiological and radioligand binding studies. Characterization of receptors containing Y190T mutations revealed unexpectedly that both α9 and α10 subunits equally contribute to the principal components of the α9α10 nAChR. In addition, we have shown that the introduction of a W55T mutation impairs receptor binding and function in the rat α9 subunit but not in the α10 subunit, indicating that the contribution of α9 and α10 subunits to complementary components of the ligand-binding site is nonequivalent. We conclude that this asymmetry, which is supported by molecular docking studies, results from adaptive amino acid changes acquired only during the evolution of mammalian α10 subunits.Fil: Boffi, Juan Carlos. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Investigaciones en Ingeniería Genética y Biología Molecular "Dr. Héctor N. Torres"; ArgentinaFil: Marcovich, Irina. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Investigaciones en Ingeniería Genética y Biología Molecular "Dr. Héctor N. Torres"; ArgentinaFil: Gill Thind, JasKiran K.. University College London; Reino UnidoFil: Corradi, Jeremias. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Bahía Blanca. Instituto de Investigaciones Bioquímicas de Bahía Blanca. Universidad Nacional del Sur. Instituto de Investigaciones Bioquímicas de Bahía Blanca; ArgentinaFil: Collins, Toby. University College London; Reino UnidoFil: Lipovsek, Maria Marcela. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Investigaciones en Ingeniería Genética y Biología Molecular "Dr. Héctor N. Torres"; ArgentinaFil: Moglie, Marcelo Javier. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Investigaciones en Ingeniería Genética y Biología Molecular "Dr. Héctor N. Torres"; ArgentinaFil: Plazas, Paola Viviana. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Investigaciones en Ingeniería Genética y Biología Molecular "Dr. Héctor N. Torres"; ArgentinaFil: Craig, Patricio Oliver. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales; ArgentinaFil: Millar, Neil S.. University College London; Reino UnidoFil: Bouzat, Cecilia Beatriz. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Bahía Blanca. Instituto de Investigaciones Bioquímicas de Bahía Blanca. Universidad Nacional del Sur. Instituto de Investigaciones Bioquímicas de Bahía Blanca; ArgentinaFil: Elgoyhen, Ana Belen. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Investigaciones en Ingeniería Genética y Biología Molecular "Dr. Héctor N. Torres"; Argentin

using provenance data and DNA

Re-examination of the historical range of the greater prairie chicke

Re-examination of the historical range of the greater prairie chickenusing provenance data and DNA analysis of museum collections

The extent to which a species has declined within its historical range is commonly used as an important criterion in categorizing the conservation status of wild populations. The greater prairie chicken ( Tympanuchus cupido ) has been extirpated from much of the area it once inhabited. However, within a large part of this area the species is not considered to be native, warranting no recovery effort or special protection. Demographic analysis based on provenance data from 238 specimens from museum collections in addition to genetic analyses of 100 mtDNA sequences suggest this species was native to the northern prairies, extending from central Minnesota to Alberta, Canada. Provenance data from 1879 to 1935 indicate that T. cupido would have required colonization and establishment of populations on an average 11,905 km 2 every year, with an estimated per capita growth rate of 8.9% per year. These rates seem unrealistic given the limited dispersal and high mortality rates reported for this species. A survey of mtDNA sequences from “original” and “expanded” ranges revealed no differences in levels of sequence diversity within ranges (π=0.018; SE=0.004) but significant levels of genetic differentiation ( F ST =0.034; P =0.013), which suggest that these populations have been relatively isolated for significant evolutionary time periods. DNA mismatch distributions fit a sudden expansion model consistent with a post-Pleistocene expansion of the species, which coincides with the expansion of prairies into the Canadian plains about 9000 years before present. This study demonstrates the value of museum collections as stores of ecological and genetic information fundamental for the conservation of natural populations, and suggests that the current status of the greater prairie chicken should be re-evaluated within all areas where this species may occur, but is now considered non-native.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/41268/1/10592_2005_Article_9110.pd