Biotic interactions in soil and dung shape parasite transmission in temperate ruminant systems : An integrative framework

ACKNOWLEDGMENTS We are thankful to QUADRAT doctoral training partnership for providing the opportunity to complete this work. This work was supported by a QUADRAT doctoral training program PhD studentship from UK Research and Innovation, via the Natural Environment Research Council. Natural Environment Research Council (NERC). Grant Number: NE/S007377/1 UKRIPeer reviewe

Consensus Recommendations for the Use of Automated Insulin Delivery (AID) Technologies in Clinical Practice

International audienceThe significant and growing global prevalence of diabetes continues to challenge people with diabetes (PwD), healthcare providers and payers. While maintaining near-normal glucose levels has been shown to prevent or delay the progression of the long-term complications of diabetes, a significant proportion of PwD are not attaining their glycemic goals. During the past six years, we have seen tremendous advances in automated insulin delivery (AID) technologies. Numerous randomized controlled trials and real-world studies have shown that the use of AID systems is safe and effective in helping PwD achieve their long-term glycemic goals while reducing hypoglycemia risk. Thus, AID systems have recently become an integral part of diabetes management. However, recommendations for using AID systems in clinical settings have been lacking. Such guided recommendations are critical for AID success and acceptance. All clinicians working with PwD need to become familiar with the available systems in order to eliminate disparities in diabetes quality of care. This report provides much-needed guidance for clinicians who are interested in utilizing AIDs and presents a comprehensive listing of the evidence payers should consider when determining eligibility criteria for AID insurance coverage

SARS-CoV-2 susceptibility and COVID-19 disease severity are associated with genetic variants affecting gene expression in a variety of tissues

Variability in SARS-CoV-2 susceptibility and COVID-19 disease severity between individuals is partly due to genetic factors. Here, we identify 4 genomic loci with suggestive associations for SARS-CoV-2 susceptibility and 19 for COVID-19 disease severity. Four of these 23 loci likely have an ethnicity-specific component. Genome-wide association study (GWAS) signals in 11 loci colocalize with expression quantitative trait loci (eQTLs) associated with the expression of 20 genes in 62 tissues/cell types (range: 1:43 tissues/gene), including lung, brain, heart, muscle, and skin as well as the digestive system and immune system. We perform genetic fine mapping to compute 99% credible SNP sets, which identify 10 GWAS loci that have eight or fewer SNPs in the credible set, including three loci with one single likely causal SNP. Our study suggests that the diverse symptoms and disease severity of COVID-19 observed between individuals is associated with variants across the genome, affecting gene expression levels in a wide variety of tissue types

TRY plant trait database – enhanced coverage and open access

Plant traits - the morphological, anatomical, physiological, biochemical and phenological characteristics of plants - determine how plants respond to environmental factors, affect other trophic levels, and influence ecosystem properties and their benefits and detriments to people. Plant trait data thus represent the basis for a vast area of research spanning from evolutionary biology, community and functional ecology, to biodiversity conservation, ecosystem and landscape management, restoration, biogeography and earth system modelling. Since its foundation in 2007, the TRY database of plant traits has grown continuously. It now provides unprecedented data coverage under an open access data policy and is the main plant trait database used by the research community worldwide. Increasingly, the TRY database also supports new frontiers of trait‐based plant research, including the identification of data gaps and the subsequent mobilization or measurement of new data. To support this development, in this article we evaluate the extent of the trait data compiled in TRY and analyse emerging patterns of data coverage and representativeness. Best species coverage is achieved for categorical traits - almost complete coverage for ‘plant growth form’. However, most traits relevant for ecology and vegetation modelling are characterized by continuous intraspecific variation and trait–environmental relationships. These traits have to be measured on individual plants in their respective environment. Despite unprecedented data coverage, we observe a humbling lack of completeness and representativeness of these continuous traits in many aspects. We, therefore, conclude that reducing data gaps and biases in the TRY database remains a key challenge and requires a coordinated approach to data mobilization and trait measurements. This can only be achieved in collaboration with other initiatives

Widening global variability in grassland biomass since the 1980s

Global change is associated with variable shifts in the annual production of aboveground plant biomass, suggesting localized sensitivities with unclear causal origins. Combining remotely sensed normalized difference vegetation index data since the 1980s with contemporary field data from 84 grasslands on 6 continents, we show a widening divergence in site-level biomass ranging from +51% to −34% globally. Biomass generally increased in warmer, wetter and species-rich sites with longer growing seasons and declined in species-poor arid areas. Phenological changes were widespread, revealing substantive transitions in grassland seasonal cycling. Grazing, nitrogen deposition and plant invasion were prevalent in some regions but did not predict overall trends. Grasslands are undergoing sizable changes in production, with implications for food security, biodiversity and carbon storage especially in arid regions where declines are accelerating

A first update on mapping the human genetic architecture of COVID-19

peer reviewe

Convalescent plasma in patients admitted to hospital with COVID-19 (RECOVERY): a randomised controlled, open-label, platform trial

SummaryBackground Azithromycin has been proposed as a treatment for COVID-19 on the basis of its immunomodulatoryactions. We aimed to evaluate the safety and efficacy of azithromycin in patients admitted to hospital with COVID-19.Methods In this randomised, controlled, open-label, adaptive platform trial (Randomised Evaluation of COVID-19Therapy [RECOVERY]), several possible treatments were compared with usual care in patients admitted to hospitalwith COVID-19 in the UK. The trial is underway at 176 hospitals in the UK. Eligible and consenting patients wererandomly allocated to either usual standard of care alone or usual standard of care plus azithromycin 500 mg once perday by mouth or intravenously for 10 days or until discharge (or allocation to one of the other RECOVERY treatmentgroups). Patients were assigned via web-based simple (unstratified) randomisation with allocation concealment andwere twice as likely to be randomly assigned to usual care than to any of the active treatment groups. Participants andlocal study staff were not masked to the allocated treatment, but all others involved in the trial were masked to theoutcome data during the trial. The primary outcome was 28-day all-cause mortality, assessed in the intention-to-treatpopulation. The trial is registered with ISRCTN, 50189673, and ClinicalTrials.gov, NCT04381936.Findings Between April 7 and Nov 27, 2020, of 16 442 patients enrolled in the RECOVERY trial, 9433 (57%) wereeligible and 7763 were included in the assessment of azithromycin. The mean age of these study participants was65·3 years (SD 15·7) and approximately a third were women (2944 [38%] of 7763). 2582 patients were randomlyallocated to receive azithromycin and 5181 patients were randomly allocated to usual care alone. Overall,561 (22%) patients allocated to azithromycin and 1162 (22%) patients allocated to usual care died within 28 days(rate ratio 0·97, 95% CI 0·87–1·07; p=0·50). No significant difference was seen in duration of hospital stay (median10 days [IQR 5 to >28] vs 11 days [5 to >28]) or the proportion of patients discharged from hospital alive within 28 days(rate ratio 1·04, 95% CI 0·98–1·10; p=0·19). Among those not on invasive mechanical ventilation at baseline, nosignificant difference was seen in the proportion meeting the composite endpoint of invasive mechanical ventilationor death (risk ratio 0·95, 95% CI 0·87–1·03; p=0·24).Interpretation In patients admitted to hospital with COVID-19, azithromycin did not improve survival or otherprespecified clinical outcomes. Azithromycin use in patients admitted to hospital with COVID-19 should be restrictedto patients in whom there is a clear antimicrobial indication

Effects of nutrient fertilization and soil tillage on soil CO2 emissions in a long-term grassland experiment

A better understanding of how land management might affect soil respiration can greatly help enhancing the long-term sustainability of agricultural soils. This study investigated the effects of two key management practices, nutrient fertilization and soil tillage, on soil respiration in an intensive grassland system. Data were collected from a long-term grassland experiment established in 1970 in Northern Ireland, UK. The experiment commenced with eight nutrient treatments: an unfertilised control, inorganic fertiliser (NPK), two types of slurry: cattle and pig slurry at three application rates. In September 2019 half of the experimental plots were tilled and reseeded with a multi-species sward mixture. Static automated chambers were used to measure the fluxes of CO2 between 2018 and 2021. Surprisingly, we did not find any significant nutrient treatment effects on mean hourly or cumulative CO2 emissions. Likewise, there were no significant differences in CO2 emissions between the type of slurry, slurry application rate or the interaction of these treatment factors. However, seasonal changes in CO2 emissions were highly significant while ploughing had a significant decreasing effect on the cumulative daily CO2 emissions but only during the establishment period (first nine weeks). Significant relationships with CO2 flux were found for soil temperature and soil water content. We also found no relationship between short-term soil CO2 emissions and long-term soil organic carbon storage data, which highlights the complexity of soil C source-sink dynamics and C balance. Our study brings evidence that regarding CO2 emissions the impact of soil tillage is short-lived, and the direct effect of nutrient additions is small

Pulse Disturbance Impacts from a Rare Freeze Event in Tampa, Florida on the Exotic Invasive Cuban Treefrog, \u3cem\u3eOsteopilus Septentrionalis\u3c/em\u3e, and Native Treefrogs

This study documented exotic invasive Osteopilus septentrionalis and native treefrog use of artificial refugia in Tampa, Florida, USA, spanning approximately 3 years, with sampling from 1 year before and after (August 2008–November 2011) a record low temperature of −4 °C on January 11, 2010. Six pipes were inserted into the ground along the upland ecotone of 15 cypress domes located along a gradient of urban land use. Over 1000 treefrogs observations were made, with O. septentrionalis representing \u3e 70 % of total counts. Treefrog captures peaked in January–February 2009 and were temporally auto-correlated per site. O. septentrionalis counts declined following each freeze, and a fitted smoothing function for month indicated declines were cumulative, with a significant minimum in counts during the last freeze in February 2011. A concurrent seasonal peak in native treefrog counts led to a temporary loss of O. septentrionalis dominance from January to March 2011. Temperatures of −4 °C were sufficient to cause mortality of O. septentrionalis in PVC refugia; however, after autocorrelation was addressed no significant trend in native treefrogs was observed during the study. Multiseason occupancy models indicated probability of extinction for O. septentrionalis between freeze events did not differ significantly from native treefrogs, whereas a high probability of colonization between freeze events indicated O. septentrionalis may be resilient even to rare freezes. Trends in O. septentrionalis presence were not significant, and it was captured at 14/15 sites following the third freeze event, suggesting extirpation from freezing temperature may be unlikely for O. septentrionalis