Monitoring Partially Synchronous Distributed Systems using SMT Solvers

In this paper, we discuss the feasibility of monitoring partially synchronous distributed systems to detect latent bugs, i.e., errors caused by concurrency and race conditions among concurrent processes. We present a monitoring framework where we model both system constraints and latent bugs as Satisfiability Modulo Theories (SMT) formulas, and we detect the presence of latent bugs using an SMT solver. We demonstrate the feasibility of our framework using both synthetic applications where latent bugs occur at any time with random probability and an application involving exclusive access to a shared resource with a subtle timing bug. We illustrate how the time required for verification is affected by parameters such as communication frequency, latency, and clock skew. Our results show that our framework can be used for real-life applications, and because our framework uses SMT solvers, the range of appropriate applications will increase as these solvers become more efficient over time.Comment: Technical Report corresponding to the paper accepted at Runtime Verification (RV) 201

Stability conditions and positivity of invariants of fibrations

We study three methods that prove the positivity of a natural numerical invariant associated to $1-$parameter families of polarized varieties. All these methods involve different stability conditions. In dimension 2 we prove that there is a natural connection between them, related to a yet another stability condition, the linear stability. Finally we make some speculations and prove new results in higher dimension.Comment: Final version, to appear in the Springer volume dedicated to Klaus Hulek on the occasion of his 60-th birthda

SU(2) WZW Theory at Higher Genera

We compute, by free field techniques, the scalar product of the SU(2) Chern-Simons states on genus > 1 surfaces. The result is a finite-dimensional integral over positions of ``screening charges'' and one complex modular parameter. It uses an effective description of the CS states closely related to the one worked out by Bertram. The scalar product formula allows to express the higher genus partition functions of the WZW conformal field theory by finite-dimensional integrals. It should provide the hermitian metric preserved by the Knizhnik-Zamolodchikov-Bernard connection describing the variations of the CS states under the change of the complex structure of the surface.Comment: 44 pages, IHES/P/94/10, Latex fil

FSPVDsse: A Forward Secure Publicly Verifiable Dynamic SSE scheme

A symmetric searchable encryption (SSE) scheme allows a client (data owner) to search on encrypted data outsourced to an untrusted cloud server. The search may either be a single keyword search or a complex query search like conjunctive or Boolean keyword search. Information leakage is quite high for dynamic SSE, where data might be updated. It has been proven that to avoid this information leakage an SSE scheme with dynamic data must be forward private. A dynamic SSE scheme is said to be forward private, if adding a keyword-document pair does not reveal any information about the previous search result with that keyword. In SSE setting, the data owner has very low computation and storage power. In this setting, though some schemes achieve forward privacy with honest-but-curious cloud, it becomes difficult to achieve forward privacy when the server is malicious, meaning that it can alter the data. Verifiable dynamic SSE requires the server to give a proof of the result of the search query. The data owner can verify this proof efficiently. In this paper, we have proposed a generic publicly verifiable dynamic SSE (DSSE) scheme that makes any forward private DSSE scheme verifiable without losing forward privacy. The proposed scheme does not require any extra storage at owner-side and requires minimal computational cost as well for the owner. Moreover, we have compared our scheme with the existing results and show that our scheme is practical.Comment: 17 pages, Published in ProvSec 201

Poly(ADP-ribose) polymerase family member 14 (PARP14) is a novel effector of the JNK2-dependent pro-survival signal in multiple myeloma

Copyright @ 2013 Macmillan Publishers Limited. This is the author's accepted manuscript. The final published article is available from the link below.Regulation of cell survival is a key part of the pathogenesis of multiple myeloma (MM). Jun N-terminal kinase (JNK) signaling has been implicated in MM pathogenesis, but its function is unclear. To elucidate the role of JNK in MM, we evaluated the specific functions of the two major JNK proteins, JNK1 and JNK2. We show here that JNK2 is constitutively activated in a panel of MM cell lines and primary tumors. Using loss-of-function studies, we demonstrate that JNK2 is required for the survival of myeloma cells and constitutively suppresses JNK1-mediated apoptosis by affecting expression of poly(ADP-ribose) polymerase (PARP)14, a key regulator of B-cell survival. Strikingly, we found that PARP14 is highly expressed in myeloma plasma cells and associated with disease progression and poor survival. Overexpression of PARP14 completely rescued myeloma cells from apoptosis induced by JNK2 knockdown, indicating that PARP14 is critically involved in JNK2-dependent survival. Mechanistically, PARP14 was found to promote the survival of myeloma cells by binding and inhibiting JNK1. Moreover, inhibition of PARP14 enhances the sensitization of MM cells to anti-myeloma agents. Our findings reveal a novel regulatory pathway in myeloma cells through which JNK2 signals cell survival via PARP14, and identify PARP14 as a potential therapeutic target in myeloma.Kay Kendall Leukemia Fund, NIH, Cancer Research UK, Italian Association for Cancer Research and the Foundation for Liver Research

Conformal field theory approach to gapless 1D fermion systems and application to the edge excitations of nu = 1/(2p+1) quantum Hall sequences

We present a comprehensive study of the effective Conformal Field Theory (CFT) describing the low energy excitations of a gas of spinless interacting fermions on a circle in the gapless regime (Luttinger liquid). Functional techniques and modular transformation properties are used to compute all correlation functions in a finite size and at finite temperature. Forward scattering disorder is treated exactly. Laughlin experiments on charge transport in a Quantum Hall Fluid on a cylinder are reviewed within this CFT framework. Edge excitations above a given bulk excitation are described by a twisted version of the Luttinger effective theory. Luttinger CFTs corresponding to the nu =1/(2p+1) filling fractions appear to be rational CFTs (RCFT). Generators of the extended symmetry algebra are identified as edge fermions creators and annihilators, thus giving a physical meaning to the RCFT point of view on edge excitations of these sequences.Comment: 69 pages, 1 figure, LaTeX2e + amstex and graphicx packages needed, fullpage.sty used (not compulsory

The Proteomic Code: a molecular recognition code for proteins

<p>Abstract</p> <p>Background</p> <p>The Proteomic Code is a set of rules by which information in genetic material is transferred into the physico-chemical properties of amino acids. It determines how individual amino acids interact with each other during folding and in specific protein-protein interactions. The Proteomic Code is part of the redundant Genetic Code.</p> <p>Review</p> <p>The 25-year-old history of this concept is reviewed from the first independent suggestions by Biro and Mekler, through the works of Blalock, Root-Bernstein, Siemion, Miller and others, followed by the discovery of a Common Periodic Table of Codons and Nucleic Acids in 2003 and culminating in the recent conceptualization of partial complementary coding of interacting amino acids as well as the theory of the nucleic acid-assisted protein folding.</p> <p>Methods and conclusions</p> <p>A novel cloning method for the design and production of specific, high-affinity-reacting proteins (SHARP) is presented. This method is based on the concept of proteomic codes and is suitable for large-scale, industrial production of specifically interacting peptides.</p

Mitochondrial Dysfunction and Adipogenic Reduction by Prohibitin Silencing in 3T3-L1 Cells

Increase in mitochondrial biogenesis has been shown to accompany brown and white adipose cell differentiation. Prohibitins (PHBs), comprised of two evolutionarily conserved proteins, prohibitin-1 (PHB1) and prohibitin-2 (PHB2), are present in a high molecular-weight complex in the inner membrane of mitochondria. However, little is known about the effect of mitochondrial PHBs in adipogenesis. In the present study, we demonstrate that the levels of both PHB1 and PHB2 are significantly increased during adipogenesis of 3T3-L1 preadipocytes, especially in mitochondria. Knockdown of PHB1 or PHB2 by oligonucleotide siRNA significantly reduced the expression of adipogenic markers, the accumulation of lipids and the phosphorylation of extracellular signal-regulated kinases. In addition, fragmentation of mitochondrial reticulum, loss of mitochondrial cristae, reduction of mitochondrial content, impairment of mitochondrial complex I activity and excessive production of ROS were observed upon PHB-silencing in 3T3-L1 cells. Our results suggest that PHBs are critical mediators in promoting 3T3-L1 adipocyte differentiation and may be the potential targets for obesity therapies