Low-energy excitations of a linearly Jahn-Teller coupled orbital quintet

The low-energy spectra of the single-mode h x (G+H) linear Jahn-Teller model is studied by means of exact diagonalization. Both eigenenergies and photoemission spectral intensities are computed. These spectra are useful to understand the vibronic dynamics of icosahedral clusters with partly filled orbital quintet molecular shells, for example C60 positive ions.Comment: 14 pages revte

Quantum limit in resonant vacuum tunneling transducers

We propose an electromechanical transducer based on a resonant-tunneling configuration that, with respect to the standard tunneling transducers, allows larger tunneling currents while using the same bias voltage. The increased current leads to an increase of the shot noise and an increase of the momentum noise which determine the quantum limit in the system under monitoring. Experiments with micromachined masses at 4.2 K could show dominance of the momentum noise over the Brownian noise, allowing observation of the quantum-mechanical noise at the mesoscopic scale

Towards cyber-physical systems as services: the ASIP protocol

The development of Cyber-Physical Systems needs to address the heterogeneity of several components that interact to build a single application. In this paper we present a model to enable easy integration and interaction of micro-controllers. Specifically, we describe the Arduino Service Interface Protocol (ASIP), we provide an implementation and client libraries for Java, Racket and Erlang, together with the description of a practical example

Algebraic-matrix calculation of vibrational levels of triatomic molecules

We introduce an accurate and efficient algebraic technique for the computation of the vibrational spectra of triatomic molecules, of both linear and bent equilibrium geometry. The full three-dimensional potential energy surface (PES), which can be based on entirely {\it ab initio} data, is parameterized as a product Morse-cosine expansion, expressed in bond-angle internal coordinates, and includes explicit interactions among the local modes. We describe the stretching degrees of freedom in the framework of a Morse-type expansion on a suitable algebraic basis, which provides exact analytical expressions for the elements of a sparse Hamiltonian matrix. Likewise, we use a cosine power expansion on a spherical harmonics basis for the bending degree of freedom. The resulting matrix representation in the product space is very sparse and vibrational levels and eigenfunctions can be obtained by efficient diagonalization techniques. We apply this method to carbonyl sulfide OCS, hydrogen cyanide HCN, water H$_2$O, and nitrogen dioxide NO$_2$. When we base our calculations on high-quality PESs tuned to the experimental data, the computed spectra are in very good agreement with the observed band origins.Comment: 11 pages, 2 figures, containg additional supporting information in epaps.ps (results in tables, which are useful but not too important for the paper

Genome sequencing of Prototheca zopfii genotypes 1 and 2 provides evidence of a severe reduction in organellar genomes

Abstract Prototheca zopfii (P. zopfii, class Trebouxiophyceae, order Chlorellales, family Chlorellaceae), a non-photosynthetic predominantly free-living unicellular alga, is one of the few pathogens belonging to the plant kingdom. This alga can affect many vertebrate hosts, sustaining systemic infections and diseases such as mastitis in cows. The aim of our work was to sequence and assemble the P. zopfii genotype 1 and genotype 2 mitochondrial and plastid genomes. Remarkably, the P. zopfii mitochondrial (38 Kb) and plastid (28 Kb) genomes are models of compaction and the smallest known in the Trebouxiophyceae. As expected, the P. zopfii genotype 1 and 2 plastid genomes lack all the genes involved in photosynthesis, but, surprisingly, they also lack those coding for RNA polymerases. Our results showed that plastid genes are actively transcribed in P. zopfii, which suggests that the missing RNA polymerases are substituted by nuclear-encoded paralogs. The simplified architecture and highly-reduced gene complement of the P. zopfii mitochondrial and plastid genomes are closer to those of P. stagnora and the achlorophyllous obligate parasite Helicosporidium than to those of P. wickerhamii or P. cutis. This similarity is also supported by maximum likelihood phylogenetic analyses inferences. Overall, the P. zopfii sequences reported here, which include nuclear genome drafts for both genotypes, will help provide both a deeper understanding of the evolution of Prototheca spp. and insights into the corresponding host/pathogen interactions

Weakening of the North American monsoon with global warming

Future changes in the North American monsoon, a circulation system that brings abundant summer rains to vast areas of the North American Southwest, could have significant consequences for regional water resources. How this monsoon will change with increasing greenhouse gases, however, remains unclear, not least because coarse horizontal resolution and systematic sea-surface temperature biases limit the reliability of its numerical model simulations. Here we investigate the monsoon response to increased atmospheric carbon dioxide (CO_2) concentrations using a 50-km-resolution global climate model which features a realistic representation of the monsoon climatology and its synoptic-scale variability. It is found that the monsoon response to CO_2 doubling is sensitive to sea-surface temperature biases. When minimizing these biases, the model projects a robust reduction in monsoonal precipitation over the southwestern United States, contrasting with previous multi-model assessments. Most of this precipitation decline can be attributed to increased atmospheric stability, and hence weakened convection, caused by uniform sea-surface warming. These results suggest improved adaptation measures, particularly water resource planning, will be required to cope with projected reductions in monsoon rainfall in the American Southwest

The influence of CO_2 forcing on North American monsoon moisture surges

Widespread multiday convective bursts in the southwestern United States during the North American monsoon are often triggered by Gulf of California moisture surges (GoC surges). However, how GoC surges, and the amount and intensity of associated precipitation, will change in response to CO_2-induced warming remains little known, not least because the most widely available climate models do not currently resolve the relevant mesoscale dynamics due to their coarse resolution (100 km or more). In this study, a 50-km resolution global coupled model (FLOR) is used to address this question. It is found that the mean number of GoC surge events remains unchanged under CO_2 doubling, but intermediate-to-high intensity surge-related precipitation tends to become less frequent, thus reducing the mean summertime rainfall. Lowlevel moisture fluxes associated with GoC surges as well as their convergence over land to the east of the GoC intensify, but the increases in low-level moisture are not matched by the larger increments in the near-surface saturation specific humidity due to amplified land warming. This results in a more unsaturated, low-level atmospheric environment which disfavors moist convection. These thermodynamic changes are accompanied by dynamics changes that are also less conducive to convective activity, with the mid-level monsoonal ridge projected to expand and move to the west of its present-day climatological maximum. Despite the overall reduction in precipitation, the frequency of very intense, localized daily surge-related precipitation in Arizona and surrounding areas is projected to increase, consistently with increased precipitable water

GLP-1 Mediates Regulation of Colonic ACE2 Expression by the Bile Acid Receptor GPBAR1 in Inflammation

Background & Aims: ACE2, a carboxypeptidase that generates Ang-(1-7) from Ang II, is highly expressed in the lung, small intestine and colon. GPBAR1, is a G protein bile acid receptor that promotes the release of the insulinotropic factor glucagon-like peptide (GLP)-1 and attenuates intestinal inflammation. Methods: We investigated the expression of ACE2, GLP-1 and GPBAR1 in two cohorts of Crohn’s disease (CD) patients and three mouse models of colitis and Gpbar1−/− mice. Activation of GPBAR1 in these models and in vitro was achieved by BAR501, a selective GPBAR1 agonist. Results: In IBD patients, ACE2 mRNA expression was regulated in a site-specific manner in response to inflammation. While expression of ileal ACE2 mRNA was reduced, the colon expression was induced. Colon expression of ACE2 mRNA in IBD correlated with expression of TNF-α and GPBAR1. A positive correlation occurred between GCG and GPBAR1 in human samples and animal models of colitis. In these models, ACE2 mRNA expression was further upregulated by GPABR1 agonism and reversed by exendin-3, a GLP-1 receptor antagonist. In in vitro studies, liraglutide, a GLP-1 analogue, increased the expression of ACE2 in colon epithelial cells/macrophages co-cultures. Conclusions: ACE2 mRNA expression in the colon of IBD patients and rodent models of colitis is regulated in a TNF-α-and GLP-1-dependent manner. We have identified a GPBAR1/GLP-1 mechanism as a positive modulator of ACE2

Discovery of a AHR pelargonidin agonist that counter-regulates Ace2 expression and attenuates ACE2-SARS-CoV-2 interaction

The severe acute respiratory syndrome (SARS)-CoV-2 is the pathogenetic agent of Corona Virus Induced Disease (COVID)19. The virus enters the human cells after binding to the angiotensin converting enzyme (ACE)2 receptor in target tissues. ACE2 expression is induced in response to inflammation. The colon expression of ACE2 is upregulated in patients with inflammatory bowel disease (IBD), highlighting a potential risk of intestinal inflammation in promoting viral entry in the human body. Because mechanisms that regulate ACE2 expression in the intestine are poorly understood and there is a need of anti-SARS-CoV-2 therapies, we have settled to investigate whether natural flavonoids might regulate the expression of Ace2 in intestinal models of inflammation. The results of these studies demonstrated that pelargonidin activates the Aryl hydrocarbon Receptor (AHR) in vitro and reverses intestinal inflammation caused by chronic exposure to high fat diet or to the intestinal braking-barrier agent TNBS in a AhR-dependent manner. In these two models, development of colon inflammation associated with upregulation of Ace2 mRNA expression. Colon levels of Ace2 mRNA were directly correlated with Tnf-α mRNA levels. Molecular docking studies suggested that pelargonidin binds a fatty acid binding pocket on the receptor binding domain of SARS-CoV-2 Spike protein. In vitro studies demonstrated that pelargonidin significantly reduces the binding of SARS-CoV-2 Spike protein to ACE2 and reduces the SARS-CoV-2 replication in a concentration-dependent manner. In summary, we have provided evidence that a natural flavonoid might hold potential in reducing intestinal inflammation and ACE2 induction in the inflamed colon in a AhR-dependent manner