2015 Research & Innovation Day Program

A one day showcase of applied research, social innovation, scholarship projects and activities.https://first.fanshawec.ca/cri_cripublications/1002/thumbnail.jp

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Critical Fluctuations in Liquid-Liquid Extraction Organic Phases Controlled by Extractant and Diluent Molecular Structure

Extractant aggregation in liquid-liquid extraction organic phases impacts extraction energetics and is related to the deleterious efficiency-limiting liquid-liquid phase transition known as third phase formation. Using small angle x-ray scattering, we find that structural heterogeneities across a wide range of compositions in binary mixtures of malonamide extractants and alkane diluents are well described by Ornstein-Zernike scattering. This suggests that structure in these simplified organic phases originates from the critical point associated with the liquid-liquid phase transition. To confirm this, we measure the temperature dependence of the organic phase structure, finding critical exponents consistent with the 3D Ising model. Molecular dynamics simulations were also consistent with this mechanism for extractant aggregation. Due to the absence of water or any other polar solutes required to form reverse-micellar-like nanostructures, these fluctuations are inherent to the binary extractant/diluent mixture. Our previous work found pseudobinary critical fluctuations near the critical point for more complex organic phases with extracted polar solutes, including water, acid and metal ions. Taken together, these results suggest this mechanism for explaining organic phase aggregation may dominate over a wide range of conditions encountered in practical liquid-liquid extraction organic phases. We also show how the molecular structure of the extractant and diluent modulate these critical concentration fluctuations by shifting the critical temperature: critical fluctuations are suppressed by increasing extractant alkyl tail lengths or decreasing diluent alkyl chain lengths. This is consistent with how extractant and diluent molecular structure are known to impact metal and acid loading capacity in many-component LLE organic phases, suggesting phase behavior of practical systems may be effectively studied in simplified organic phases. Overall, the explicit connection between molecular structure, aggregation and phase behavior demonstrated here will enable the design of more efficient separations processes

Molecular Dynamics Simulations as a Tool for Accurate Determination of Surfactant Micelle Properties

Molecular dynamics (MD) simulations were used to characterize the equilibrium size, shape, hydration, and self-assembly of dodecylphosphocholine (DPC) and dodecyl-β-D-maltoside (DDM) micelles. We show that DPC molecules self-assemble to form micelles with sizes within the range reported in the experimental literature. The equilibrium shape of DPC and DDM micelles as well as associated micellar radii are in agreement with small-angle X-ray scattering (SAXS) experiments and theoretical packing parameters. In addition, we show that hydration of the micelle interior is limited; however, flexibility of the acyl chains leads to dynamic encounters with the solvated outer shell of the micelle, providing an explanation for long-standing differences in models of micelle hydration. Altogether, our results provide fundamental understanding of physical characteristics of micelles that can be utilized to study other types of detergents and proteomicelle complexes

Unveiling the mechanism of the photocatalytic reduction of CO 2 to formate promoted by porphyrinic Zr-based metal–organic frameworks

International audienceA complete picture of the reaction mechanism driving the photocatalytic reduction of CO 2 into formate promoted by the Zr-based porphyrinic MOF-545 in CH 3 CN/TEOA solutions is provided for the first time by combining experimental and computational approaches

Role of Surface-Grafted Polymers on Mechanical Reinforcement of Metal–Organic Framework–Polymer Composites

Utilizing metal–organic frameworks (MOFs) as reinforcing fillers for polymer composites is a promising strategy because of the low density, high specific modulus, and tunable aspect ratio (AR). However, it has not been demonstrated for the MOF-reinforced polymer composite using MOFs with high AR and polymer-grafted surface, both of which are extremely important factors for efficient load transfer and favorable particle–matrix interaction. To this end, we designed an MOF–polymer composite system using high AR MOF PCN-222 as the mechanical reinforcer. Moreover, we developed a synthetic route to graft poly(methyl methacrylate) (PMMA) from the surface of PCN-222 through surface-initiated atomic transfer radical polymerization (SI-ATRP). The successful growth of PMMA on the surface of PCN-222 was confirmed via proton nuclear magnetic resonance and infrared spectroscopy. Through thermogravimetric analysis, the grafting density was found to be 0.18 chains/nm2. The grafted polymer molecular weight was controlled ranging from 50.3 to 158 kDa as suggested by size exclusion chromatography. Finally, we fabricated MOF–polymer composite films by the doctor-blading technique and measured the mechanical properties through the tension mode of dynamic mechanical analysis. We found that the mechanical properties of the composites were improved with increasing grafted PMMA molecular weight. The maximum reinforcement, a 114% increase in Young’s modulus at 0.5 wt % MOF loading in comparison to pristine PMMA films, was achieved when the grafted molecular weight was higher than the matrix molecular weight, which was in good agreement with previous literature. Moreover, our composite presents the highest reinforcement measured via Young’s modulus at low weight loading among MOF-reinforced polymer composites due to the high MOF AR and enhanced interface. Our approach offers great potential for lightweight mechanical reinforcement with high AR MOFs and a generalizable grafting-from strategy for porphyrin-based MOFs