456 research outputs found
Transiting exoplanets from the CoRoT space mission. XV. CoRoT-15b: a brown dwarf transiting companion
We report the discovery by the CoRoT space mission of a transiting brown
dwarf orbiting a F7V star with an orbital period of 3.06 days. CoRoT-15b has a
radius of 1.12 +0.30 -0.15 Rjup, a mass of 63.3 +- 4.1 Mjup, and is thus the
second transiting companion lying in the theoretical mass domain of brown
dwarfs. CoRoT-15b is either very young or inflated compared to standard
evolution models, a situation similar to that of M-dwarfs stars orbiting close
to solar-type stars. Spectroscopic constraints and an analysis of the
lightcurve favors a spin period between 2.9 and 3.1 days for the central star,
compatible with a double-synchronisation of the system.Comment: 7 pages, 6 figures, accepted in A&
A fast Monte Carlo algorithm for site or bond percolation
We describe in detail a new and highly efficient algorithm for studying site
or bond percolation on any lattice. The algorithm can measure an observable
quantity in a percolation system for all values of the site or bond occupation
probability from zero to one in an amount of time which scales linearly with
the size of the system. We demonstrate our algorithm by using it to investigate
a number of issues in percolation theory, including the position of the
percolation transition for site percolation on the square lattice, the
stretched exponential behavior of spanning probabilities away from the critical
point, and the size of the giant component for site percolation on random
graphs.Comment: 17 pages, 13 figures. Corrections and some additional material in
this version. Accompanying material can be found on the web at
http://www.santafe.edu/~mark/percolation
Crises and collective socio-economic phenomena: simple models and challenges
Financial and economic history is strewn with bubbles and crashes, booms and
busts, crises and upheavals of all sorts. Understanding the origin of these
events is arguably one of the most important problems in economic theory. In
this paper, we review recent efforts to include heterogeneities and
interactions in models of decision. We argue that the Random Field Ising model
(RFIM) indeed provides a unifying framework to account for many collective
socio-economic phenomena that lead to sudden ruptures and crises. We discuss
different models that can capture potentially destabilising self-referential
feedback loops, induced either by herding, i.e. reference to peers, or
trending, i.e. reference to the past, and account for some of the phenomenology
missing in the standard models. We discuss some empirically testable
predictions of these models, for example robust signatures of RFIM-like herding
effects, or the logarithmic decay of spatial correlations of voting patterns.
One of the most striking result, inspired by statistical physics methods, is
that Adam Smith's invisible hand can badly fail at solving simple coordination
problems. We also insist on the issue of time-scales, that can be extremely
long in some cases, and prevent socially optimal equilibria to be reached. As a
theoretical challenge, the study of so-called "detailed-balance" violating
decision rules is needed to decide whether conclusions based on current models
(that all assume detailed-balance) are indeed robust and generic.Comment: Review paper accepted for a special issue of J Stat Phys; several
minor improvements along reviewers' comment
Predicting Inactive Conformations of Protein Kinases Using Active Structures: Conformational Selection of Type-II Inhibitors
Protein kinases have been found to possess two characteristic conformations in their activation-loops: the active DFG-in conformation and the inactive DFG-out conformation. Recently, it has been very interesting to develop type-II inhibitors which target the DFG-out conformation and are more specific than the type-I inhibitors binding to the active DFG-in conformation. However, solving crystal structures of kinases with the DFG-out conformation remains a challenge, and this seriously hampers the application of the structure-based approaches in development of novel type-II inhibitors. To overcome this limitation, here we present a computational approach for predicting the DFG-out inactive conformation using the DFG-in active structures, and develop related conformational selection protocols for the uses of the predicted DFG-out models in the binding pose prediction and virtual screening of type-II ligands. With the DFG-out models, we predicted the binding poses for known type-II inhibitors, and the results were found in good agreement with the X-ray crystal structures. We also tested the abilities of the DFG-out models to recognize their specific type-II inhibitors by screening a database of small molecules. The AUC (area under curve) results indicated that the predicted DFG-out models were selective toward their specific type-II inhibitors. Therefore, the computational approach and protocols presented in this study are very promising for the structure-based design and screening of novel type-II kinase inhibitors
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