Delineation of RAID1, the RACK1 interaction domain located within the unique N-terminal region of the cAMP-specific phosphodiesterase, PDE4D5

Background The cyclic AMP specific phosphodiesterase, PDE4D5 interacts with the β-propeller protein RACK1 to form a signaling scaffold complex in cells. Two-hybrid analysis of truncation and mutant constructs of the unique N-terminal region of the cAMP-specific phosphodiesterase, PDE4D5 were used to define a domain conferring interaction with the signaling scaffold protein, RACK1. Results Truncation and mutagenesis approaches showed that the RACK1-interacting domain on PDE4D5 comprised a cluster of residues provided by Asn-22/Pro-23/Trp-24/Asn-26 together with a series of hydrophobic amino acids, namely Leu-29, Val-30, Leu-33, Leu-37 and Leu-38 in a 'Leu-Xaa-Xaa-Xaa-Leu' repeat. This was done by 2-hybrid analyses and then confirmed in biochemical pull down analyses using GST-RACK1 and mutant PDE4D5 forms expressed in COS cells. Mutation of Arg-34, to alanine, in PDE4D5 attenuated its interaction with RACK1 both in 2-hybrid screens and in pull down analyses. A 38-mer peptide, whose sequence reflected residues 12 through 49 of PDE4D5, bound to RACK1 with similar affinity to native PDE4D5 itself (Ka circa 6 nM). Conclusions The RACK1 Interaction Domain on PDE4D5, that we here call RAID1, is proposed to form an amphipathic helical structure that we suggest may interact with the C-terminal β-propeller blades of RACK1 in a manner akin to the interaction of the helical G-γ signal transducing protein with the β-propeller protein, G-β

La comunidad de ácaros Mesostigmata (Acari, Mesostigmata) en el dosel arbóreo de bosques de pícea en Irlanda en comparación con la presente en hábitats muscícolas edáficos

The main aim of this study was to examine the communities of mesostigmatid mites occurring in Irish Sitka spruce (Picea sitchensis) canopies or inhabiting moss, either in the canopy or on the soil surface, and to discover whether a characteristic assemblage of species occurs in particular habitat patches (ground vs. aerial). Twenty two species of Mesostigmata were recorded, of which five occurred exclusively in arboreal microhabitats. All three species of Zerconidae collected were unique to the canopy and moss mats on the tree branches. Trachytes aegrota (C.L. Koch, 1841) was recorded for the first time in Ireland and some comments about its distribution are made. Multivariate analysis indicated that the arboreal mesostigmatid community is not just a subset of the assemblage occurring in moss on soil or trunks and that it appears to be more homogeneous than those occurring on the soil surface.El objetivo principal de este trabajo fue estudiar en Irlanda las comunidades de ácaros Mesostigmata del dosel arbóreo de bosques de Picea sitchensis y en el musgo desarrollado tanto en zonas aéreas como en la superficie edáfica, con el fin de determinar si la estructura y composición de éstas comunidades variaba entre los hábitats diferenciales (edáficos vs. aéreos). Se obtuvieron 22 especies de ácaros Mesostigmata, de las cuales 5 aparecieron solamente en micro-hábitats arbóreos. Las especies de la familia Zerconidae recogidas en este estudio se encontraron exclusivamente en ramas y musgos desarrollados en el dosel. Trachytes aegrota (C.L. Koch, 1841), es citado por primera vez para Irlanda. Se ofrecen asimismo comentarios sobre la distribución de esta especie. El análisis multivariante de los resultados indicó que las poblaciones arbóreas de ácaros Mesostigmata no son un mero subconjunto estructural sino que forman una comunidad diferencial respecto a las presentes en hábitats muscícolas del tronco o del medio edáfico, y son más homogéneas que las existentes en la superficie del suelo

Controlling the uncontrolled: Are there incidental experimenter effects on physiologic responding?

The degree to which experimenters shape participant behavior has long been of interest in experimental social science research. Here, we extend this question to the domain of peripheral psychophysiology, where experimenters often have direct, physical contact with participants, yet researchers do not consistently test for their influence. We describe analytic tools for examining experimenter effects in peripheral physiology. Using these tools, we investigate nine data sets totaling 1,341 participants and 160 experimenters across different roles (e.g., lead research assistants, evaluators, confederates) to demonstrate how researchers can test for experimenter effects in participant autonomic nervous system activity during baseline recordings and reactivity to study tasks. Our results showed (a) little to no significant variance in participants' physiological reactivity due to their experimenters, and (b) little to no evidence that three characteristics of experimenters that are well known to shape interpersonal interactions-status (using five studies with 682 total participants), gender (using two studies with 359 total participants), and race (in two studies with 554 total participants)-influenced participants' physiology. We highlight several reasons that experimenter effects in physiological data are still cause for concern, including the fact that experimenters in these studies were already restricted on a number of characteristics (e.g., age, education). We present recommendations for examining and reducing experimenter effects in physiological data and discuss implications for replication

Reading in two writing systems: Accommodation and assimilation of the brain's reading network

Bilingual reading can require more than knowing two languages. Learners must acquire also the writing conventions of their second language, which can differ in its deep mapping principles (writing system) and its visual configurations (script). We review ERP (event-related potential) and fMRI studies of both Chinese-English bilingualism and Chinese second language learning that bear on the system accommodation hypothesis: the neural networks acquired for one system must be modified to accommodate the demands of a new system. ERP bilingual studies demonstrate temporal indicators of the brain's experience with L1 and L2 and with the frequency of encounters of words in L2. ERP learning studies show that early visual processing differences between L1 and L2 diminish during a second term of study. fMRI studies of learning converge in finding that learners recruit bilateral occipital-temporal and also middle frontal areas when reading Chinese, similar to the pattern of native speakers and different from alphabetic reading. The evidence suggests an asymmetry: alphabetic readers have a neural network that accommodates the demands of Chinese by recruiting neural structures less needed for alphabetic reading. Chinese readers have a neural network that partly assimilates English into the Chinese system, especially in the visual stages of word identification. © Cambridge University Press 2007.published_or_final_versio

Nonliteral comprehension

There is a general concern about the reading and thinking abilities of today\u27s youth. Of special concern are students\u27 abilities to make inferences about what they read. Recent data show that students\u27 basic reading skills have generally improved or have remained stable during the 1970s, but the inferential comprehension of 13- and 17-year-olds has dropped. This, study focuses on nonliteral comprehension. Specifically, this study describes how researchers have defined nonliteral comprehension and ways the nonliteral comprehension of children might be improved

Nitrogen Mineralization from Root Residues of Subterranean Clover and Lucerne

To understand why crops grown in the first or second year after lucerne (Medicago sativa L.) yielded less than crops grown after subterranean clover (Trifolium subterraneum L.) despite greater nitrogen (N) fixation by the lucerne, we studied the N mineralization patterns of their root residues in soil incubation assays. Fine roots of both species produced more mineral N than the control soil with no root residues. In contrast, coarse roots mineralized less N than the control soil. These differences in N mineralization were not explained by the physical size and therefore surface area differences between fine and coarse roots. Rather, the differences in N mineralization were explained by differences in the carbon to nitrogen ratio (C:N) of fine and coarse roots. Fine roots of both species had a C:N of about 11, while the C:N of coarse roots ranged from 28 to 37. Empirical evidence suggests that a mineralization / immobilization threshold occurs at a C:N of 20 to 30, and these results are in accordance with this interpretation. However, subterranean clover had mainly fine roots giving a weighted average C:N of 19 for the whole root system, while lucerne had mainly coarse roots giving an average C:N of 26, suggesting that root residues of subterranean clover result in a net mineralization of N while lucerne roots cause a net immobilization of N

The Role and Sources of Individual Differences in Critical-Analytic Thinking: a Capsule Overview

Critical-analytic thinking is typically conceived as a meta-construct that arises at the junction of a problem state (i.e., a situation that requires analysis that challenges previous assumptions) and an individual (i.e., an entity with the capacity to exercise critical-analytic thinking). With regard to the latter, there is a substantial body of research focusing on developmental and educational prerequisites for critical-analytic thinking. A less studied aspect of critical-analytic thinking pertains to individual differences, particularly in the set of foundational or componential cognitive skills that embody this construct. The bottom line here is whether, all else being equal (i.e., the same situation and the same developmental/educational stage), there is variation in whether, when, and how people think critically/analytically. We argue that there is unequivocal evidence for both the existence and importance of individual differences in critical-analytic thinking. This review focuses on theoretical and empirical evidence, identifying the cognitive processes that serve as the sources of these individual differences and capturing these processes’ differential contributions to both the critical and analytic components of this construct.National Institutes of Health (U.S.) (Grant HD079143

Interaction with receptor for activated C-kinase 1 (RACK1) sensitizes the phosphodiesterase PDE4D5 towards hydrolysis of cAMP and activation by protein kinase C

We have previously identified the PKC (protein kinase C)-anchoring protein RACK1 (receptor for activated C-kinase 1), as a specific binding partner for the cAMP-specific phosphodiesterase PDE4D5, suggesting a potential site for cross-talk between the PKC and cAMP signalling pathways. In the present study we found that elevation of intracellular cAMP, with the β2-adrenoceptor agonist isoproterenol (isoprenaline), led to activation of PDE4 enzymes in the particulate and soluble fractions of HEK (human embryonic kidney)-293 cells. In contrast activation of PDE4D5, with isoproterenol and the PKC activator PMA, was restricted to the particulate fraction, where it interacts with RACK1; however, RACK1 is dispensable for anchoring PDE4D5 to the particulate fraction. Kinetic studies demonstrated that RACK1 alters the conformation of particulate-associated PDE4D5 so that it more readily interacts with its substrate cAMP and with rolipram, a PDE4 inhibitor that specifically targets the active site of the enzyme. Interaction with RACK1 was also essential for PKC-dependent and ERK (extracellular-signal-regulated kinase)-independent phosphorylation (on Ser126), and activation of PDE4D5 in response to PMA and isoproterenol, both of which trigger the recruitment of PKCα to RACK1. Together these results reveal novel signalling cross-talk, whereby RACK1 mediates PKC-dependent activation of PDE4D5 in the particulate fraction of HEK-293 cells in response to elevations in intracellular cAMP