71 research outputs found

    High-resolution computed tomography reconstructions of invertebrate burrow systems

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    The architecture of biogenic structures can be highly influential in determining species contributions to major soil and sediment processes, but detailed 3-D characterisations are rare and descriptors of form and complexity are lacking. Here we provide replicate high-resolution micro-focus computed tomography (μ-CT) data for the complete burrow systems of three co-occurring, but functionally contrasting, sediment-dwelling inter-tidal invertebrates assembled alone, and in combination, in representative model aquaria. These data (≤2,000 raw image slices aquarium−1, isotropic voxel resolution, 81 μm) provide reference models that can be used for the development of novel structural analysis routines that will be of value within the fields of ecology, pedology, geomorphology, palaeobiology, ichnology and mechanical engineering. We also envisage opportunity for those investigating transport networks, vascular systems, plant rooting systems, neuron connectivity patterns, or those developing image analysis or statistics related to pattern or shape recognition. The dataset will allow investigators to develop or test novel methodology and ideas without the need to generate a complete three-dimensional computation of exemplar architecture

    Micro-CT-scanning as a valuable source of data for musculoskeletal studies in biology

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    Over time, so-called classic biological studies (such as anatomical studies) have evolved into modern, highly integrated strategies tackling important questions in evolutionary biology. Where early morphologists limited themselves to descriptions based on dissections, non-invasive imaging techniques nowadays allow to uncover details of anatomy in a way that morphologists can go far beyond basic and descriptive anatomy, e.g. through modelling. In this presentation, an overview is presented on some on-going research projects that rely on X-ray tomography data, which focus on the adaptive evolution of musculoskeletal systems in different vertebrate lineages. Cases discussed are (1) a study on the cranial anatomical diversity and functional implications in the feeding apparatus in seahorses, (2) as well as multi-body modelling of the tail system in these fishes; and (3) structural diversity in Darwin’s finches in relation to high performance seed cracking. These cases clearly show the (still not fully explored) potential for testing specific hypotheses with respect to adaptive evolution, where X-ray tomography provides the tools to model experimental conditions that are impossible to achieve with live specimens (e.g. perfect control of specific parameters)

    X-ray microtomography provides first data about the feeding behaviour of an endangered lizard, the Montserrat galliwasp (Diploglossus montisserrati)

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    International audienceReporting the diet of recently extinct or very rare taxa, only known by a few museum specimens, is challenging. This study uses X-ray microtomography, a non-destructive investigation method, to obtain the first data about feeding behaviours in the Montserrat galliwasp (Diploglossus montisserrati) by scanning one of the two specimens known to date. The scans revealed the occurrence of shell fragments of a freshwater snail (Omalonyx matheroni) in the digestive tract of the specimen. This data combined with morphological evidence shows the occurrence of a durophagous feeding habit and a possible tendency of association with freshwater environments. This information could be crucial to save this critically endangered lizard endemic on Montserrat island

    Does diet drive the evolution of head shape and bite force in chameleons of the genus Bradypodion?

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    1. The head is a complex integrated system that is implicated in many vital functions. As such, its morphology is impacted by different and sometimes conflicting demands. Consequently, head shape varies greatly depending on the environment and dietary ecology of an organism. Moreover, given its role in territory defence and mating in lizards, it is also subjected to strong sexual selection in these animals. 2. We investigated the relationships between head shape, bite performance and diet in 14 of the 17 extant Bradypodion species to determine whether variation in diet can explain the observed diversity in bite force and head shape in this genus. We also evaluate differences between sexes in terms of the relationships between head shape, bite force and diet and predict tighter relationships in females given that the head in this sex is principally under natural selection. 3. Our results show that there is indeed a correlation between head shape, diet and bite force, but the direction and magnitude are sex-dependent. Whereas we observed a correlation between absolute bite force and head shape in both sexes, size-corrected bite force was correlated with mandible and quadrate shape in females only. Despite strong correlations between bite force and prey hardness, and between prey hardness and head shape, we did not find any relationship between head shape and prey evasiveness. 4. These data suggest that the cranial system in chameleons of the genus Bradypodion evolves under natural selection for the ability to eat large or hard prey. Moreover, significant differences in the ecomorphological relationships between the two sexes suggest that sexual selection plays a role in driving the evolution of bite force and head shape. These data suggest that ecomorphological relationships may be sex-dependent

    Mixed contrast transfer and transport of intensity approach for phase retrieval in the Fresnel region

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    Rhabdias (Nematoda: Rhabdiasidae) from Chamaeleonidae (Sauria): two new species from Trioceros ellioti in east Africa and one from Brookesia superciliaris in Madagascar

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    Rhabdias casiraghii n. sp. and R. kibiraensis n. sp. are described from Trioceros ellioti from Burundi and co-infection was observed in one of the host specimens. Distinctive characters between these species are, among others, the mouth and buccal capsule in front view, both of which are round in the former and laterally flattened in the latter species. Both species have a complete set of submedian head papillae (three in each submedian axis) as observed in the fourth stage larva of R. americanus from anurans. This primitive character opposes them to other species parasitic in Chamaeleonidae that have a single papilla per axis. The third species is the first described from the primitive chamaeleonid genus Brookesia; R. brygooi n. sp. from B. superciliaris from Madagascar can be distinguished from other Rhabdias in Chamaeleonidae by the small diameter of its mouth and buccal capsule. In this character, it resembles parasites from anurans. However, its infective larva has a rounded caudal extremity ornated with buds, as described in species of Rhabdias parasitic in Chamaeleonidae

    X-ray in-line phase microtomography for biomedical applications

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    International audienceIn this chapter, we describe X-ray phase tomography based on in-line phase contrast images. Phase tomography is a computational imaging technique, which is gaining increased attention due to the increase in sensitivity it offers over conventional, attenuation-based techniques. The increased sensitivity is of particular interest in biomedical imaging, especially for soft tissue visualization and analysis. The in-line technique offers a very simple imaging setup compared to other currently available X-ray phase contrast imaging techniques. The basic principles of the imaging technique are described, starting with an analysis of the image formation process, followed by a review of the most common reconstruction algorithms and practical results on parameter selection. Finally, three examples of biomedical imaging applications are presented: imaging of a human breast biopsy, small animal imaging and bone tissue engineering, with the aim to show imaging in different conditions and different reconstruction options
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