Assessing seasonal demographic covariation to understand environmental‐change impacts on a hibernating mammal

Natural populations are exposed to seasonal variation in environmental factors that simultaneously affect several demographic rates (survival, development and reproduction). The resulting covariation in these rates determines population dynamics, but accounting for its numerous biotic and abiotic drivers is a significant challenge. Here, we use a factor‐analytic approach to capture partially unobserved drivers of seasonal population dynamics. We use 40 years of individual‐based demography from yellow‐bellied marmots (Marmota flaviventer ) to fit and project population models that account for seasonal demographic covariation using a latent variable. We show that this latent variable, by producing positive covariation among winter demographic rates, depicts a measure of environmental quality. Simultaneously, negative responses of winter survival and reproductive‐status change to declining environmental quality result in a higher risk of population quasi‐extinction, regardless of summer demography where recruitment takes place. We demonstrate how complex environmental processes can be summarized to understand population persistence in seasonal environments

Evaluating potential effects of solar power facilities on wildlife from an animal behavior perspective

Solar power is a renewable energy source with great potential to help meetincreasing global energy demands and reduce our reliance on fossil fuels.However, research is scarce on how solar facilities affect wildlife. With inputfrom professionals in ecology, conservation, and energy, we conducted aresearch-prioritization process and identified key questions needed to betterunderstand impacts of solar facilities on wildlife. We focused on animalbehavior, which can be used to identify population responses before mortal-ity or other fitness consequences are documented. Behavioral studies canalso offer approaches to understand the mechanisms leading to negativeinteractions (e.g., collision, singeing, avoidance) and provide insight into mit-igating effects. Here, we review how behavioral responses to solar facilities, including perception, movement, habitat use, and interspecific interactionsare priority research areas. Addressing these themes will lead to a morecomprehensive understanding of the effects of solar power on wildlife andguide future mitigatio

Universal DNA methylation age across mammalian tissues

DATA AVAILABILITY STATEMENT : The individual-level data from the Mammalian Methylation Consortium can be accessed from several online locations. All data from the Mammalian Methylation Consortium are posted on Gene Expression Omnibus (complete dataset, GSE223748). Subsets of the datasets can also be downloaded from accession numbers GSE174758, GSE184211, GSE184213, GSE184215, GSE184216, GSE184218, GSE184220, GSE184221, GSE184224, GSE190660, GSE190661, GSE190662, GSE190663, GSE190664, GSE174544, GSE190665, GSE174767, GSE184222, GSE184223, GSE174777, GSE174778, GSE173330, GSE164127, GSE147002, GSE147003, GSE147004, GSE223943 and GSE223944. Additional details can be found in Supplementary Note 2. The mammalian data can also be downloaded from the Clock Foundation webpage: https://clockfoundation.org/MammalianMethylationConsortium. The mammalian methylation array is available through the non-profit Epigenetic Clock Development Foundation (https://clockfoundation.org/). The manifest file of the mammalian array and genome annotations of CpG sites can be found on Zenodo (10.5281/zenodo.7574747). All other data supporting the findings of this study are available from the corresponding author upon reasonable request. The chip manifest files, genome annotations of CpG sites and the software code for universal pan-mammalian clocks can be found on GitHub95 at https://github.com/shorvath/MammalianMethylationConsortium/tree/v2.0.0. The individual R code for the universal pan-mammalian clocks, EWAS analysis and functional enrichment studies can be also found in the Supplementary Code.SUPPLEMENTARY MATERIAL 1 : Supplementary Tables 1–3 and Notes 1–6.SUPPLEMENTARY MATERIAL 2 : Reporting SummarySUPPLEMENTARY MATERIAL 3 : Supplementary Data 1–14.SUPPLEMENTARY MATERIAL 4 : Supplementary Code.Aging, often considered a result of random cellular damage, can be accurately estimated using DNA methylation profiles, the foundation of pan-tissue epigenetic clocks. Here, we demonstrate the development of universal pan-mammalian clocks, using 11,754 methylation arrays from our Mammalian Methylation Consortium, which encompass 59 tissue types across 185 mammalian species. These predictive models estimate mammalian tissue age with high accuracy (r > 0.96). Age deviations correlate with human mortality risk, mouse somatotropic axis mutations and caloric restriction. We identified specific cytosines with methylation levels that change with age across numerous species. These sites, highly enriched in polycomb repressive complex 2-binding locations, are near genes implicated in mammalian development, cancer, obesity and longevity. Our findings offer new evidence suggesting that aging is evolutionarily conserved and intertwined with developmental processes across all mammals.https://www.nature.com/nataginghj2024Zoology and EntomologySDG-15:Life on lan

Feeling vulnerable? Indirect risk cues differently influence how two marsupials respond to novel dingo urine

In Tasmania, introduced predators are becoming more common. How Tasmanian prey respond to novel predator cues is of particular interest for their survival and management. Prey response to predator scents may depend on whether predator and prey share an evolutionary history and may be influenced by indirect risk cues such as perceived shelter or safety in the environment. To simultaneously explore the effects of indirect and direct risk cues (predator scent) on free-living Tasmanian pademelons (Thylogale billardierii) and brush tail possums (Trichosurus vulpecula), we placed dingo (Canis lupus dingo) urine scents inside and outside a 25 -m2 selective feeding enclosure to mimic a heterogeneous risk landscape. Despite the lack of a historical relationship between dingoes and Tasmanian fauna, pademelons and possums demonstrated flight and vigilance when confronted with the novel scent outside the enclosure. According to our index of deterrence, number of successful entries/approaches, both species were deterred. However, responses inside the safe enclosure differed according to species. For instance, pademelons made more approaches/entries into the enclosure and fled more following approaches to scent marks both inside and outside the enclosure. In comparison, possums only exhibited similar responses outside the enclosure, and there was no effect of stimulus inside the safe compound. Our findings suggest that small animals may be pre-adapted to avoid some predators they have not previously been in contact with, and that brush tail possums are more likely to respond to predation cues when exposed and vulnerable. Ultimately, the cumulative effects of direct and indirect risk cues may either increase or reduce a repellent response

Is sociality associated with high longevity in North American birds?

Sociality, as a life-history trait, should be associated with high longevity because complex sociality is characterized by reproductive suppression, delayed breeding, increased care and survival, and some of these traits select for high longevity. We studied the relationship between cooperative parental care (a proxy of complex sociality) and relative maximum lifespan in 257 North American bird species. After controlling for variation in maximum lifespan explained by body mass, sampling effort, latitude, mortality rate, migration distance and age at first reproduction, we found no significant effect of cooperative care on longevity in analyses of species-specific data or phylogenetically independent standardized linear contrasts. Thus, sociality itself is not associated with high longevity. Rather, longevity is correlated with increased body size, survival rate and age of first reproduction

Is the propensity to emit alarm calls associated with health status?

The production and structure of animal signals may depend on an individual’s health status and may provide more than one type of information to receivers. While alarm calls are not typically viewed as health condition dependent, recent studies have suggested that their structure, and possibly their propensity to be emitted, depends on an individual’s health condition and state. We asked whether the propensity of yellow-bellied marmots (Marmota flaviventer) to emit calls is influenced by their immunological or parasite status, by quantifying both trap-elicited and natural calling rates as a function of their neutrophil-to-lymphocyte (NL) ratio, the presence of a blood borne trypanosome, and the presence of several intestinal parasites (Eimeria sp., Entamoeba sp., and Ascaris sp.). We fitted mixed effects models to determine if the health measures we collected were associated with the probability of calling in a trap and with annual rates of natural alarm calling. Marmots infected with a blood-borne trypanosome were marginally more likely to call naturally and when trapped, while those infected with the intestinal parasite Ascaris were less likely to call when trapped. NL ratio was not directly associated with in-trap calling probability, but males were more likely to call when they had higher NL ratios. Thus, health conditions, such as parasite infection and immune system activation, can modulate the production of alarm signals and potentially provide information to both predators and prey about the caller’s condition. Playback experiments are required to confirm if receivers use such information

An in situ vertebrate bioassay helps identify potential matrices for a predator-based synthetic management tool

To assist management and conservation needs, researchers have called for active kairomones to be elucidated and synthesized directly from animal exudates. However, the existing literature does not provide guidance on how to initiate this complex process. To our knowledge, composite synthetic predator scents that incorporate multiple compounds to accurately mimic the natural signal have not been produced. One approach to improve the accuracy of synthetics is to identify and recombine all major infochemicals within a benign solvent. Therefore, we tested 2 natural, pre-existing matrices for their potential as vehicles for delivery of a predator scent, dingo (Canis lupus dingo) urine, which causes a startle reaction among western gray kangaroos (Macropus fuliginosus), and avoidance by European foxes (Vulpes vulpes). We compared 2 putative backbone matrices -aged (3-yr old) dingo urine from a previously active lot, and 10% methanol -to a distilled water control. We used a novel fence-crossing assay to observe kangaroo interactions with both solvents and a negative control. Our assay allowed us to control for high feeding motivation by testing compounds away from the food source. We determined that neither free-ranging kangaroos nor European red foxes were adversely affected by either treatment matrix. Foxes were, however, attracted to the aged dingo urine, and were often observed scent-rolling in the inactive substance. Our results suggest that dilute methanol could be a possible matrix for predator-scent applications for kangaroos, while aged scents may act as an attractant for nontarget species, particularly canids

Harnessing natural selection to tackle the problem of prey naivete

Many populations are threatened or endangered because of excessive predation resulting from individuals’ inability to recognize, avoid, or escape alien predators. Such prey na€ıvete is often attributed to the absence of prior experience and co-evolution between native prey and introduced predators. Many reintroduction programs focus on reducing predation rate by excluding introduced predators, a focus which ignores, and indeed exacerbates, the problem of prey na€ıvete. We argue for a new paradigm in reintroduction biology that expands the focus from predator control to kick-starting learning and evolutionary processes between alien predators and reintroduced prey. By exposing reintroduced prey to carefully controlled levels of alien predators, in situ predation could enhance reintroduction success by facilitating acquisition of learned antipredator responses and through natural selection for appropriate antipredator traits. This in situ predator exposure should be viewed as a long-term process but is likely to be the most efficient and expedient way to improve prey responses and assist in broadscale recovery of threatened species.Katherine E. Moseby, Daniel T. Blumstein, Mike Letni