Isidella elongata (Cnidaria: Alcyonacea) facies in the western Mediterranean Sea: Visual surveys and descriptions of its ecological role

Isidella elongata is a candelabrum-shaped alcyonacean forming important facies on the bathyal muddy bottoms of the Mediterranean Sea, currently considered a sensitive habitat and heavily impacted by deep-sea fisheries. Until a few decades ago, this facies was a widespread habitat of the deep Mediterranean seabed and I. elongata was a common species in the trawling fishery's bycatch. Despite its current persistence in dense aggregations being very scarce, a dense facies of I. elongata was revealed during several ROV (Remotely Operated Vehicle) surveys carried out from 2010 to 2014 on the muddy bottoms between two seamounts east of Ibiza (Balearic Sea). The facies developed in an area between 480 and 615 m in depth where trawling is forbidden, with an extraordinary density of about 2300–2683 colonies/ha, representing one of the biggest facies of I. elongata currently known for the Mediterranean Sea considering the surface covered and the colonies' density. The associated community was surveyed, with 50 taxa identified. Moreover, a canyon southwest of Formentera characterised by the presence of I. elongata together with a high trawling impact was investigated. The density of the colonies was 53–62 colonies/ha and only 19 taxa of associated fauna were observed. The results of the two areas are compared and discussed in the framework of the protection of such an important habitat

Inhibition of Nuclear Factor of Activated T-Cells (NFAT) Suppresses Accelerated Atherosclerosis in Diabetic Mice

OBJECTIVE OF THE STUDY: Diabetic patients have a much more widespread and aggressive form of atherosclerosis and therefore, higher risk for myocardial infarction, peripheral vascular disease and stroke, but the molecular mechanisms leading to accelerated damage are still unclear. Recently, we showed that hyperglycemia activates the transcription factor NFAT in the arterial wall, inducing the expression of the pro-atherosclerotic protein osteopontin. Here we investigate whether NFAT activation may be a link between diabetes and atherogenesis. METHODOLOGY AND PRINCIPAL FINDINGS: Streptozotocin (STZ)-induced diabetes in apolipoprotein E(-/-) mice resulted in 2.2 fold increased aortic atherosclerosis and enhanced pro-inflammatory burden, as evidenced by elevated blood monocytes, endothelial activation- and inflammatory markers in aorta, and pro-inflammatory cytokines in plasma. In vivo treatment with the NFAT blocker A-285222 for 4 weeks completely inhibited the diabetes-induced aggravation of atherosclerosis, having no effect in non-diabetic mice. STZ-treated mice exhibited hyperglycemia and higher plasma cholesterol and triglycerides, but these were unaffected by A-285222. NFAT-dependent transcriptional activity was examined in aorta, spleen, thymus, brain, heart, liver and kidney, but only augmented in the aorta of diabetic mice. A-285222 completely blocked this diabetes-driven NFAT activation, but had no impact on the other organs or on splenocyte proliferation or cytokine secretion, ruling out systemic immunosuppression as the mechanism behind reduced atherosclerosis. Instead, NFAT inhibition effectively reduced IL-6, osteopontin, monocyte chemotactic protein 1, intercellular adhesion molecule 1, CD68 and tissue factor expression in the arterial wall and lowered plasma IL-6 in diabetic mice. CONCLUSIONS: Targeting NFAT signaling may be a novel and attractive approach for the treatment of diabetic macrovascular complications

Positron scattering from the group IIB metals zinc and cadmium: recommended cross sections and transport simulations

Results from the application of our optical potential and relativistic optical potential models to positron scattering from gas-phase zinc (Zn) and cadmium (Cd) are presented. In particular, integral cross sections (ICSs) for elastic scattering, positronium formation, summed discrete electronic-state excitation, and ionization scattering processes are reported for both species and over an extended incident positron energy range. From those ICSs, the total cross section is subsequently constructed by taking their sum. We note that there are currently no experimental data available for any of these scattering processes for either species, with earlier computational results being limited to the elastic channel and restricted to relatively narrow incident positron energy regimes. Nonetheless, we construct recommended positron cross section datasets for both zinc and cadmium over the incident positron energy range of 0-10 000 eV. The recommended positron cross section data are subsequently employed in a multi-term Boltzmann equation analysis to simulate the transport of positrons, under the influence of an applied (external) electric field, through the background Zn and Cd gases. Qualitatively similar behavior in the calculated transport coefficients was observed between both species. Finally, for the case of zinc, the present positron transport coefficients are compared against corresponding results from electron transport with some significant differences now being observed

The N-Tachyon Assisted Inflation

In continuation of the papers hep-th/0505012 and hep-th/0508101 we investigate the consequences when $N$ open-string tachyons roll down simultaneously. We demonstrate that the $N$-Tachyon system coupled to gravity does indeed give rise to the assisted slow-roll inflation.Comment: 12 pages; v2: minor correction in eq.15 and a note added; v3: mix-up of convention corrected in sec.3, small change in result

An intuitionistic approach to scoring DNA sequences against transcription factor binding site motifs

Background: Transcription factors (TFs) control transcription by binding to specific regions of DNA called transcription factor binding sites (TFBSs). The identification of TFBSs is a crucial problem in computational biology and includes the subtask of predicting the location of known TFBS motifs in a given DNA sequence. It has previously been shown that, when scoring matches to known TFBS motifs, interdependencies between positions within a motif should be taken into account. However, this remains a challenging task owing to the fact that sequences similar to those of known TFBSs can occur by chance with a relatively high frequency. Here we present a new method for matching sequences to TFBS motifs based on intuitionistic fuzzy sets (IFS) theory, an approach that has been shown to be particularly appropriate for tackling problems that embody a high degree of uncertainty. Results: We propose SCintuit, a new scoring method for measuring sequence-motif affinity based on IFS theory. Unlike existing methods that consider dependencies between positions, SCintuit is designed to prevent overestimation of less conserved positions of TFBSs. For a given pair of bases, SCintuit is computed not only as a function of their combined probability of occurrence, but also taking into account the individual importance of each single base at its corresponding position. We used SCintuit to identify known TFBSs in DNA sequences. Our method provides excellent results when dealing with both synthetic and real data, outperforming the sensitivity and the specificity of two existing methods in all the experiments we performed. Conclusions: The results show that SCintuit improves the prediction quality for TFs of the existing approaches without compromising sensitivity. In addition, we show how SCintuit can be successfully applied to real research problems. In this study the reliability of the IFS theory for motif discovery tasks is proven