The genetics of symbiotic nitrogen fixation: comparative genomics of 14 Rhizobia Strains by resolution of protein clusters.

The symbiotic relationship between legumes and nitrogen fixing bacteria is critical for agriculture, as it may have profound impacts on lowering costs for farmers, on land sustainability, on soil quality, and on mitigation of greenhouse gas emissions. However, despite the importance of the symbioses to the global nitrogen cycling balance, very few rhizobial genomes have been sequenced so far, although there are some ongoing efforts in sequencing elite strains. In this study, the genomes of fourteen selected strains of the order Rhizobiales, all previously fully sequenced and annotated, were compared to assess differences between the strains and to investigate the feasibility of defining a core ?symbiome??the essential genes required by all rhizobia for nodulation and nitrogen fixation. Comparison of these whole genomes has revealed valuable information, such as several events of lateral gene transfer, particularly in the symbiotic plasmids and genomic islands that have contributed to a better understanding of the evolution of contrasting symbioses. Unique genes were also identified, as well as omissions of symbiotic genes that were expected to be found. Protein comparisons have also allowed the identification of a variety of similarities and differences in several groups of genes, including those involved in nodulation, nitrogen fixation, production of exopolysaccharides, Type I to Type VI secretion systems, among others, and identifying some key genes that could be related to host specificity and/or a better saprophytic ability. However, while several significant differences in the type and number of proteins were observed, the evidence presented suggests no simple core symbiome exists. A more abstract systems biology concept of nitrogen fixing symbiosis may be required. The results have also highlighted that comparative genomics represents a valuable tool for capturing specificities and generalities of each genome.bitstream/item/74069/1/ID-34062.pd

Evaluation of wind tunnel performance testings of an advanced 45 deg swept 8-bladed propeller at Mach numbers from 0.45 to 0.85

The increased emphasis of fuel conservation in the world and the rapid increase in the cost of jet fuel has stimulated a series of studies of both conventional and unconventional propulsion systems for commercial aircraft. The results of these studies indicate that a fuel saving of 15 to 30 percent may be realized by the use of an advanced high-speed turboprop (Prop-Fan) compared to aircraft equipped with high bypass turbofan engines of equivalent technology. The Prop-Fan propulsion system is being investigated as part of the NASA Aircraft Energy Efficient Program. This effort includes the wind tunnel testing of a series of 8 and 10-blade Prop-Fan models incorporate swept blades. Test results indicate efficiency levels near the goal of 80 percent at Mach 0.8 cruise and an altitude of 10.67 km (35,000 ft). Each successive swept model has shown improved efficiency relative to the straight blade model. The fourth model, with 45 deg swept blades reported herein, shows a net efficiency of 78.2 at the design point with a power loading of 301 kW/sq meter and a tip speed of 243.8 m/sec (800 ft/sec.)

Exploring Io's atmospheric composition with APEX: first measurement of 34SO2 and tentative detection of KCl

The composition of Io's tenuous atmosphere is poorly constrained. Only the major species SO2 and a handful of minor species have been positively identified, but a variety of other molecular species should be present, based on thermochemical equilibrium models of volcanic gas chemistry and the composition of Io's environment. This paper focuses on the spectral search for expected yet undetected molecular species (KCl, SiO, S2O) and isotopes (34SO2). We analyze a disk-averaged spectrum of a potentially line-rich spectral window around 345 GHz, obtained in 2010 at the APEX-12m antenna (Atacama Pathfinder EXperiment). Using different models assuming either extended atmospheric distributions or a purely volcanically-sustained atmosphere, we tentatively measure the KCl relative abundance with respect to SO2 and derive a range of 4x10^{-4}-8x10^{-3}. We do not detect SiO or S2O and present new upper limits on their abundances. We also present the first measurement of the 34S/32S isotopic ratio in gas phase on Io, which appears to be twice as high as the Earth and ISM reference values. Strong lines of SO2 and SO are also analyzed to check for longitudinal variations of column density and relative abundance. Our models show that, based on their predicted relative abundance with respect to SO2 in volcanic plumes, both the tentative KCl detection and SiO upper limit are compatible with a purely volcanic origin for these species.Comment: Accepted for publication in ApJ. 11 pages, 4 figure

Influence of temperature dependent inelastic scattering on the superconducting proximity effect

We have measured the differential resistance of mesoscopic gold wires of different lengths connected to an aluminum superconductor as a function of temperature and voltage. Our experimental results differ substantially from theoretical predictions which assume an infinite temperature independent gap in the superconductor. In addition to taking into account the temperature dependence of the gap, we must also introduce a temperature dependent inelastic scattering length in order to fit our data

Decoherence in qubits due to low-frequency noise

The efficiency of the future devices for quantum information processing is limited mostly by the finite decoherence rates of the qubits. Recently a substantial progress was achieved in enhancing the time, which a solid-state qubit demonstrates a coherent dynamics. This progress is based mostly on a successful isolation of the qubits from external decoherence sources. Under these conditions the material-inherent sources of noise start to play a crucial role. In most cases the noise that quantum device demonstrate has 1/f spectrum. This suggests that the environment that destroys the phase coherence of the qubit can be thought of as a system of two-state fluctuators, which experience random hops between their states. In this short review we discuss the current state of the theory of the decoherence due to the qubit interaction with the fluctuators. We describe the effect of such an environment on different protocols of the qubit manipulations - free induction and echo signal. It turns out that in many important cases the noise produced by the fluctuators is non-Gaussian. Consequently the results of the interaction of the qubit with the fluctuators are not determined by the pair correlation function only. We describe the effect of the fluctuators using so-called spin-fluctuator model. Being quite realistic this model allows one to evaluate the qubit dynamics in the presence of one fluctuator exactly. This solution is found, and its features, including non-Gaussian effects are analyzed in details. We extend this consideration for the systems of large number of fluctuators, which interact with the qubit and lead to the 1/f noise. We discuss existing experiments on the Josephson qubit manipulation and try to identify non-Gaussian behavior.Comment: 25 pages, 7 figure

High-temperature optically activated GaAs power switching for aircraft digital electronic control

Gallium arsenide high-temperature devices were fabricated and assembled into an optically activated pulse-width-modulated power control for a torque motor typical of the kinds used in jet engine actuators. A bipolar heterojunction phototransistor with gallium aluminum arsenide emitter/window, a gallium arsenide junction field-effect power transistor and a gallium arsenide transient protection diode were designed and fabricated. A high-temperature fiber optic/phototransistor coupling scheme was implemented. The devices assembled into the demonstrator were successfully tested at 250 C, proving the feasibility of actuator-located switching of control power using optical signals transmitted by fibers. Assessments of the efficiency and technical merits were made for extension of this high-temperature technology to local conversion of optical power to electrical power and its control at levels useful for driving actuators. Optical power sources included in the comparisons were an infrared light-emitting diode, an injection laser diode, tungsten-halogen lamps and arc lamps. Optical-to-electrical power conversion was limited to photovoltaics located at the actuator. Impedance matching of the photovoltaic array to the load was considered over the full temperature range, -55 C to 260 C. Loss of photovoltaic efficiency at higher temperatures was taken into account. Serious losses in efficiency are: (1) in the optical source and the cooling which they may require in the assumed 125 C ambient, (2) in the decreased conversion efficiency of the gallium arsenide photovoltaic at 260 C, and (3) in impedance matching. Practical systems require improvements in these areas

First detection of [N II] 205 micrometer absorption in interstellar gas

We present high resolution [NII] 205 micrometer ^3P_1-^3P_0 spectra obtained with Herschel-HIFI towards a small sample of far-infrared bright star forming regions in the Galactic plane: W31C (G10.6-0.4), W49N (G43.2-0.1), W51 (G49.5-0.4), and G34.3+0.1. All sources display an emission line profile associated directly with the HII regions themselves. For the first time we also detect absorption of the [NII] 205 micrometer line by extended low-density foreground material towards W31C and W49N over a wide range of velocities. We attribute this absorption to the warm ionised medium (WIM) and find N(N^+)\approx 1.5x10^17 cm^-2 towards both sources. This is in agreement with recent Herschel-HIFI observations of [CII] 158 micrometer, also observed in absorption in the same sight-lines, if \approx7-10 % of all C^+ ions exist in the WIM on average. Using an abundance ratio of [N]/[H] = 6.76x10^-5 in the gas phase we find that the mean electron and proton volume densities are ~0.1-0.3 cm^-3 assuming a WIM volume filling fraction of 0.1-0.4 with a corresponding line-of-sight filling fraction of 0.46-0.74. A low density and a high WIM filling fraction are also supported by RADEX modelling of the [NII] 205 micrometer absorption and emission together with visible emission lines attributed mainly to the WIM. The detection of the 205 micrometer line in absorption emphasises the importance of a high spectral resolution, and also offers a new tool for investigation of the WIM.Comment: 7 pages, 4 figures, accepted for publication in Astronomy & Astrophysics, 11 June 201

Resolving the shocked gas in HH54 with Herschel: CO line mapping at high spatial and spectral resolution

The HH54 shock is a Herbig-Haro object, located in the nearby Chamaeleon II cloud. Observed CO line profiles are due to a complex distribution in density, temperature, velocity, and geometry. Resolving the HH54 shock wave in the far-infrared cooling lines of CO constrain the kinematics, morphology, and physical conditions of the shocked region. We used the PACS and SPIRE instruments on board the Herschel space observatory to map the full FIR spectrum in a region covering the HH54 shock wave. Complementary Herschel-HIFI, APEX, and Spitzer data are used in the analysis as well. The observed features in the line profiles are reproduced using a 3D radiative transfer model of a bow-shock, constructed with the Line Modeling Engine code (LIME). The FIR emission is confined to the HH54 region and a coherent displacement of the location of the emission maximum of CO with increasing J is observed. The peak positions of the high-J CO lines are shifted upstream from the lower J CO lines and coincide with the position of the spectral feature identified previously in CO(10-9) profiles with HIFI. This indicates a hotter molecular component in the upstream gas with distinct dynamics. The coherent displacement with increasing J for CO is consistent with a scenario where IRAS12500-7658 is the exciting source of the flow, and the 180 K bow-shock is accompanied by a hot (800 K) molecular component located upstream from the apex of the shock and blueshifted by -7 km s$^{-1}$. The spatial proximity of this knot to the peaks of the atomic fine-structure emission lines observed with Spitzer and PACS ([OI]63, 145 $\mu$m) suggests that it may be associated with the dissociative shock as the jet impacts slower moving gas in the HH54 bow-shock.Comment: 6 pages, 5 figure

Characterizations of quasitrivial symmetric nondecreasing associative operations

We provide a description of the class of n-ary operations on an arbitrary chain that are quasitrivial, symmetric, nondecreasing, and associative. We also prove that associativity can be replaced with bisymmetry in the definition of this class. Finally we investigate the special situation where the chain is finite