50 research outputs found

    Combining Variational Autoencoders and Physical Bias for Improved Microscopy Data Analysis

    Full text link
    Electron and scanning probe microscopy produce vast amounts of data in the form of images or hyperspectral data, such as EELS or 4D STEM, that contain information on a wide range of structural, physical, and chemical properties of materials. To extract valuable insights from these data, it is crucial to identify physically separate regions in the data, such as phases, ferroic variants, and boundaries between them. In order to derive an easily interpretable feature analysis, combining with well-defined boundaries in a principled and unsupervised manner, here we present a physics augmented machine learning method which combines the capability of Variational Autoencoders to disentangle factors of variability within the data and the physics driven loss function that seeks to minimize the total length of the discontinuities in images corresponding to latent representations. Our method is applied to various materials, including NiO-LSMO, BiFeO3, and graphene. The results demonstrate the effectiveness of our approach in extracting meaningful information from large volumes of imaging data. The fully notebook containing implementation of the code and analysis workflow is available at https://github.com/arpanbiswas52/PaperNotebooksComment: 20 pages, 7 figures in main text, 4 figures in Supp Ma

    Cerebrospinal fluid adenosine deaminase level as a diagnostic marker in adult tuberculous meningitis: a study conducted in a tertiary care hospital of Eastern India

    Get PDF
    Background: Tubercular meningitis is one of the highly prevalent form of meningitis in the world and is a significant cause of morbidity and mortality in developing countries like India. Lack of early and timely diagnosis and subsequent initiation of treatment makes the fatality rate even higher. Cerebrospinal fluid (CSF) analysis is most important aspect of lab diagnosis in tuberculous meningitis (TBM) worldwide. The objective of this study was to study the cerebrospinal fluid CSF adenosine deaminase (ADA) levels in TBM and non-TBM meningitis cases and to determine its diagnostic significance as a biochemical marker of TBM infection.Methods: The study population comprised three different patient groups. TBM (n=36), pyogenic meningitis (n=17) and aseptic meningitis group (n=12). Total 75 subjects were enrolled consecutively in the study and CSF specimens were collected from them. ADA and other cytological and biochemical estimation were carried out using standard protocol.Results: ADA level in TBM in compare to non-TBM was more and mean ADA level of TBM, AM and PM are 26.423±3.8, 2.602±0.5 and 6.29±0.3 respectively. There are highly significant differences between the TBM and non-TBM groups and also in compare with individual groups.Conclusions: CSF ADA levels are elevated in the TBM cases as compared to the non-TBM - meningitis cases.  Results are statistically significant. It is a simple and inexpensive diagnostic adjunctive test in the rapid and early diagnosis of TBM

    Autonomous convergence of STM control parameters using Bayesian Optimization

    Full text link
    Scanning Tunneling microscopy (STM) is a widely used tool for atomic imaging of novel materials and its surface energetics. However, the optimization of the imaging conditions is a tedious process due to the extremely sensitive tip-surface interaction, and thus limits the throughput efficiency. Here we deploy a machine learning (ML) based framework to achieve optimal-atomically resolved imaging conditions in real time. The experimental workflow leverages Bayesian optimization (BO) method to rapidly improve the image quality, defined by the peak intensity in the Fourier space. The outcome of the BO prediction is incorporated into the microscope controls, i.e., the current setpoint and the tip bias, to dynamically improve the STM scan conditions. We present strategies to either selectively explore or exploit across the parameter space. As a result, suitable policies are developed for autonomous convergence of the control-parameters. The ML-based framework serves as a general workflow methodology across a wide range of materials.Comment: 31 pages, 5 figures and Supplementary Informatio

    Boost invariant spin hydrodynamics within the first order in derivative expansion

    Full text link
    Boost-invariant equations of spin hydrodynamics confined to the first-order terms in gradients are numerically solved. The spin equation of state, relating the spin density tensor to the spin chemical potential, is consistently included in the first order. Depending on its form and the structure of the spin transport coefficients, we find solutions which are both stable and unstable within the considered evolution times of 10 fm/c. These findings are complementary to the recent identification of stable and unstable modes for perturbed uniform spin systems described by similar hydrodynamic frameworks.Comment: 11 pages, 3 figures. Comments are welcom

    WIMPs in Dilatonic Einstein Gauss-Bonnet Cosmology

    Full text link
    We use the Weakly Interacting Massive Particle (WIMP) thermal decoupling scenario to probe Cosmologies in dilatonic Einstein Gauss-Bonnet (dEGB) gravity, where the Gauss-Bonnet term is non-minimally coupled to a scalar field with vanishing potential. We put constraints on the model parameters when the ensuing modified cosmological scenario drives the WIMP annihilation cross section beyond the present bounds from DM indirect detection searches. In our analysis we assumed WIMPs that annihilate to Standard Model particles through an s-wave process. For the class of solutions that comply with WIMP indirect detection bounds, we find that dEGB typically plays a mitigating role on the scalar field dynamics at high temperature, slowing down the speed of its evolution and reducing the enhancement of the Hubble constant compared to its standard value. For such solutions, we observe that the corresponding boundary conditions at high temperature correspond asymptotically to a vanishing deceleration parameter q, so that the effect of dEGB is to add an accelerating term that exactly cancels the deceleration predicted by General Relativity. The bounds from WIMP indirect detection are nicely complementary to late-time constraints from compact binary mergers. This suggest that it could be interesting to use other Early Cosmology processes to probe the dEGB scenario.Comment: 30 pages, 8 figures, 1 tabl
    corecore